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McCollough, Cynthia H.

https://orcid.org/0000-0002-5346-332X

Mayo Clinic

Mayo Clinic

Citations 202

Prospective comparison of ultra-high-resolution photon-counting detector CT coronary angiography versus conventional CT
McCollough, Cynthia H. , Davis, Ann A., Weber, Nikkole M. , Kasten, Holly J., Melka, Elnata F., Rajendran, Kishore , Leng, Shuai , Davis, Aeden K, Leng, Shuai , McCollough, Cynthia H , Rajendran, Kishore , Carter, Rickey E.

British Journal of Radiology | September 5, 2025 | Volume: 99 | Issue: 1177 | Pages: 73-82

10.1093/bjr/tqaf220 Get It

Abstract Objectives Determine differences in quantitative stenosis severity measurements for ultra-high-resolution (UHR) photon-counting detector (PCD) coronary CT angiography (cCTA) relative to energy-integrating detector (EID) cCTA in a large patient cohort. Methods Adult participants seen between November 2022 and March 2023 underwent a clinical dual-source EID-CT cCTA and a research dual-source PCD-CT cCTA on the same day. Percent diameter stenosis (PDS) was measured, and stenosis severity was assigned based on the PDS of the most severe lesion per patient to determine a coronary artery disease reporting and data system (CAD-RADS) score. Agreement between EID-CT and PCD-CT for PDS and CAD-RADS was determined. Results A total of 112 participants were enrolled, yielding 82 subjects with at least 1 stenosis at PCD-CT (mean age, 68.0 ± 10.8 years; 69.5% [57/82] males). A total of 177 paired stenoses were quantified. The percent decrease in mean PDS from PCD-CT (24.3%) to EID-CT (29.4%) was 17.3% (median difference in PDS: −5.0%, 95% CI: −5.7% to −4.0%). The assigned CAD-RADS score changed in 31/82 subjects. In 11/31 subjects, the most severe stenosis was missed at EID-CT due to partial volume averaging of a small calcification, yet PCD clearly identified stenosis at those locations. In 20/31 subjects, the CAD-RADS score decreased at PCD-CT due to the decreased calcium blooming resulting from the improved spatial resolution. Conclusions UHR PCD cCTA decreases quantitative measures of stenosis severity when a stenosis is identified at EID, leading to decreases in CAD-RADS assignments. Advances in knowledge With its improved spatial resolution, PCD-CT identifies stenoses missed on EID-CT.
Advances in CT technology and clinical applications—introductory editorial
McCollough, Cynthia H. , Jinzaki, Masahiro , Alkadhi, Hatem , McCollough, Cynthia H

British Journal of Radiology | August 26, 2025 | Volume: 98 | Issue: 1175 | Pages: 1721-1723

10.1093/bjr/tqaf216 Get It

Preserving noise texture through training data curation for deep learning denoising of high‐resolution cardiac EID‐CT
Treb, Kevin , Chang, Shaojie , Koons, Emily K. , Marsh, Jeffrey F., Foley, Thomas A. , Williamson, Eric E. , Koons, Emily, Marsh, Jeffrey, Foley, Thomas , McCollough, Cynthia, Treb, Kevin , McCollough, Cynthia H. , Leng, Shuai

Medical Physics | July 15, 2025 | Volume: 52 | Issue: 7 | Pages: No page available

10.1002/mp.17938 Get It

Abstract Background To utilize high spatial resolution reconstructions for cardiac imaging at energy‐integrating detector CT (EID)‐CT with comparable noise to similar reconstructions at photon‐counting detector (PCD)‐CT, methods to control EID‐CT image noise are needed. Supervised convolutional neural networks (CNN) have shown promise for denoising, but a challenge remains to efficiently create high‐quality and unbiased estimates of noise without access to dedicated software or proprietary information, such that natural noise texture is retained in CNN‐denoised CT images. Purpose This study aims to develop and test image‐based noise estimation methods that can be used to train a CNN model, and to evaluate denoising performance and noise texture preservation for EID‐CT coronary CT angiography (cCTA) images reconstructed with high‐resolution kernels. Methods U‐net CNN models were trained for denoising. To supervise training, noise‐only images were estimated directly from high‐resolution kernel (Bv59) reconstructed EID‐CT (HR EID‐CT) patient images using two different methods: subtraction of low‐ and high‐strength iterative reconstruction (IR); subtraction of adjacent image slices with the same IR strength. The noise estimates from these methods contain differing noise texture and anatomical information. Networks were trained and validated separately for three data sets: the training data from each of the two noise‐estimation methods, and a 50%–50% partition of training data between the two methods. The trained models were applied to two sets of testing data: CT images of a uniform water phantom to measure noise power spectra (NPS), and an independent cohort of seven patient cCTA HR EID‐CT exams. The denoised patient images were compared to standard resolution EID‐CT reconstructions (Bv40). As a low‐noise reference, patient images acquired on the same day with a PCD‐CT and reconstructed using a similar kernel as HR EID‐CT were used for comparison. Results Models trained with each noise‐image estimation method denoised the HR EID‐CT images by 74%–79% to achieve a comparable noise magnitude to the HR PCD‐CT images. The peak, average, and 10% peak frequencies of the NPS of the input images (6.08, 6.24, and 12.0 cm −1 ) were better approximated by the model trained on adjacent slice subtraction (6.56, 5.87, and 11.5 cm −1 ) than by the model trained on subtraction of low‐ and high‐IR images (4.64, 5.44, and 11.3 cm −1 ). In cCTA images, the IR subtraction model images retained anatomic structures from input images but resulted in undesirable salt‐and‐pepper noise texture and CT number bias. The model trained on adjacent slice subtraction images had more natural texture and no significant bias, but the model sometimes removed small anatomic structures. The model trained on the mixed training dataset preserved both noise texture and anatomy from the model inputs and enabled visualization of small structures seen in PCD‐CT images that were previously unresolved by EID‐CT. Conclusions The noise texture and anatomical accuracy in CT images denoised with an image‐based supervised CNN are greatly influenced by the characteristics and partitioning of training data. With higher‐resolution reconstructions and noise texture‐preserving deep learning denoising, the quality of cCTA images from EID‐CT can be enhanced to enable resolvability of subtle anatomy similar to PCD‐CT.
Quantitative CT imaging: where are we, and what is missing?
Treb, Kevin , Sadaney, Ahmed O El , Ferrero, Andrea , Leng, Shuai , Yu, Lifeng , McCollough, Cynthia H. , Rajendran, Kishore , Treb, Kevin J, El Sadaney, Ahmed O , Leng, Shuai , Yu, Lifeng , Rajiah, Prabhakar Shantha, McCollough, Cynthia H , Rajendran, Kishore , Treb, Kevin , Baffour, Francis , Rajiah, Prabhakar , Fletcher, Joel G.

British Journal of Radiology | April 7, 2025 | Volume: 98 | Issue: 1175 | Pages: 1834-1842

10.1093/bjr/tqaf075 Get It

Abstract Quantitative computed tomography (CT) enables the measurement of biophysical processes characterized by morphology, composition, flow, and/or motion to aid in clinical diagnosis and intervention. Since its initial application for determining bone mineral density for skeletal fragility assessment, quantitative CT has continued to evolve alongside CT’s technological advancements. A key challenge facing quantitative CT is the lack of standardization pertinent to image acquisition, reconstruction, and image analysis. With the introduction of spectral CT involving dual-energy approaches and photon-counting detectors (PCD), we are now able to obtain detailed information regarding mass densities of endogenous and exogeneous materials. Furthermore, energy-resolved CT yields spectral image types (eg, virtual monoenergetic image) that are, in principle, independent of tube potential and patient size. This paves the way for workflow standardization and helps improve the consistency and reproducibility of CT-derived measurements. In this article, we review clinical applications of quantitative CT, discuss key challenges associated with quantitative CT and its adoption into routine practice, and outline the unique benefits ushered by new CT technologies such as PCD-CT towards improving quantitative imaging.
Simultaneous ultra-high resolution multi-energy cardiac imaging in a dual-source photon counting detector CT system
Shanblatt, Elisabeth R. , Swicklik, Joseph R., Allmendinger, Thomas , Schmidt, Bernhard , Flohr, Thomas , McCollough, Cynthia H. , Leng, Shuai , McCollough, Cynthia H , Leng, Shuai , Rajendran, Kishore

British Journal of Radiology | March 30, 2025 | Volume: 98 | Issue: 1175 | Pages: 1873-1879

10.1093/bjr/tqaf069 Get It

Abstract Objectives To assess quantitative and qualitative image characteristics in phantoms and patients using a simultaneous ultra-high resolution (UHR) and multi-energy (ME) dual-source cardiac scan mode in a photon counting detector (PCD) CT scanner. Methods UHR-ME cardiac scans were performed to determine the spatial resolution and multi-energy performance. UHR reconstructions were completed to measure transverse and axial spatial resolution in terms of modulation transfer function (MTF) and slice sensitivity profile (SSP). Virtual monoenergetic images (VMIs), virtual non-contrast (VNC) images, and iodine concentration images were created using moderately sharp reconstruction kernels to assess ME performance. With IRB approval, coronary CT angiograms were acquired in 19 patients using the UHR-ME mode, from which iodine contrast-to-noise ratio (CNR) was measured. Various ME post-processing tasks were performed to show the utility of the spectral capabilities. Results VMIs showed a mean CT number error of 6.0%, while iodine accuracy was 0.71 mg/cc (root-mean-square-error). Spatial resolution matched well with a standard UHR mode. Patient images showed a trend of higher CNR at lower keV, while higher keV images showed decreased calcium blooming. ME techniques to separate iodine and calcium were used successfully. Conclusions The combination of UHR-ME cardiac mode retains UHR image quality while providing flexibility for ME post-processing. Advances in knowledge Cardiac UHR-ME PCD-CT scanning offers simultaneous UHR and ME imaging without loss of spatial or temporal resolution or quantitative accuracy.
The Use of Computed Tomography Densitometry for the Assessment of Emphysema in Clinical Trials: A Position Paper from the Fleischner Society
Estépar, Raúl San Jośe , Barr, R. Graham, Fain, Sean B. , Hoffman, Eric A. , Humphries, Stephen M. , Obuchowski, Nancy A. , Ryerson, Christopher J. , Bankier, Alexander A. , Crapo, James D. , Han, Meilan, Kellermeyer, Liz , Newell, John D. , Miller, Bruce E. , Nordenmark, Lars H. , Rémy‐Jardin, Martine , Silverman, Edwin K. , Washko, George R. , Lynch, David A. , San Jose Estepar, Raul , Hoffman, Eric A , Humphries, Stephen M , Tal-Singer, Ruth , Ash, Samuel Y , Barr, R. Graham, Greniér, Philippe , Kirby, Miranda , Seo, Joon Beom , Tal‐Singer, Ruth , Han, MeiLan King , Goldin, Jonathan , McCollough, Cynthia H. , Prokop, Mathias , Ohno, Yoshiharu , Strange, Charlie

American Journal of Respiratory and Critical Care Medicine | March 24, 2025 | Volume: 211 | Issue: 5 | Pages: 709-728

10.1164/rccm.202410-2012so Get It

Abstract Emphysema’s significant morbidity and mortality underscore the need for reliable outcome metrics in clinical trials. However, commonly accepted chronic obstructive pulmonary disease outcome measures do not adequately capture emphysema severity or progression. Computed tomography (CT) metrics have been validated as accurate indicators of pathological emphysema and predictors of chronic obstructive pulmonary disease progression, exacerbations, and mortality. This position paper reviews the evidence supporting CT densitometry as a biomarker for emphysema, establishes implementation standards, and highlights areas for future research. A systematic literature review addressed three key questions: whether CT densitometry can be used as a diagnostic biomarker of emphysema, whether CT densitometry can be used as a prognostic biomarker, and whether longitudinal change in densitometry can be used as a disease progression monitoring biomarker. Emphysema metrics, such as the percentage of low attenuation areas below −950 Hounsfield units, are validated, highly reproducible diagnostic and prognostic biomarkers. Volume-adjusted lung density is recommended for disease monitoring. Both metrics demonstrate a scan–rescan intraclass correlation coefficient of 0.99 with proper technique. The paper also discusses relevant CT physics, techniques, and sources of variation, including technical factors, physiological changes, and software analysis. Key recommendations for clinical trials include using standardized CT techniques, proper subject selection, and longitudinal evaluation with volume-adjusted lung density.
Physics‐informed model‐based generative neural network for synthesizing scanner‐ and algorithm‐specific low‐dose CT exams
Yu, Lifeng , Hsieh, Scott S. , Gong, Hao , Yu, Lifeng , Leng, Shuai , Fletcher, Joel G. , McCollough, Cynthia H.

Medical Physics | February 13, 2025 | Volume: 52 | Issue: 6 | Pages: 3940-3958

10.1002/mp.17680 Get It

Abstract Background Accurate low‐dose CT simulation is required to efficiently assess reconstruction and dose reduction techniques. Projection domain noise insertion requires proprietary information from manufacturers. Analytic image domain noise insertion methods are successful for linear reconstruction algorithms, however extending them to non‐linear algorithms remains challenging. Emerging, deep‐learning‐based image domain noise insertion methods have potential, but few approaches have explicitly incorporated physics information and a texture‐synthesis model to guide the generation of locally and globally correlated noise texture. Purpose We proposed a p hysics‐informed model‐based gener a tive neura l network for simulating scann e r‐ and algori t hm‐specific low‐dose C T e xams (PALETTE). It is expected to provide an alternative to projection domain noise insertion methods in the absence of manufacturers’ proprietary information and tools. Methods PALETTE integrated a physics‐based noise prior generation process, a Noise2Noisier sub‐network, and a noise texture synthesis sub‐network. The Noise2Noisier sub‐network provided a bias prior, which, combined with the noise prior, served as the inputs to noise texture synthesis sub‐network. Explicit regularizations in spatial and frequency domains were developed to account for noise spatial correlation and frequency characteristics. For proof‐of‐concept, PALETTE was trained and validated for a commercial iterative reconstruction algorithm (SAFIRE, Siemens Healthineers), using the paired routine and 25% dose images from CT phantoms (lateral size 30–40 cm; three training and four testing phantoms) and open‐access patient cases (10 training and 20 testing cases). In phantom validation, noise power spectra (NPS) were compared in water background and tissue‐mimicking inserts, using peak frequency and mean‐absolute‐error (MAE). In patient case evaluation, visual inspection and quantitative assessment were conducted on axial, coronal, and sagittal planes. Local and global noise texture were visually inspected in low‐dose CT images and the difference images between routine and low dose. Noise levels in liver and fat were measured. Local and global 2D Fourier magnitude spectra of the difference images and the corresponding radial mean profiles were used to assess similarity in noise frequency components within tissues and entire field‐of‐view, using spectral correlation mapper (SCM) and spectral angle mapper (SAM). Several baseline neural network models (e.g., GAN) were included in the evaluation. Statistical significance was tested using a t ‐test for related samples. Results PALETTE‐derived NPS showed accurate noise peak frequency (PALETTE/reference: water 1.40/1.40 lp/cm; inserts 1.7/1.7lp/cm) and small MAE (≤0.65 HU 2 cm 2 ). PALETTE created anatomy‐dependent noise texture, showing realistic local and global granularity and streaks. No statistically significant difference was observed in noise levels ( p > 0.05). Noise range was comparable across 3D image volume (PALETTE / reference):liver – [18.0, 53.4] / [19.3, 50.0] HU; fat – [11.7, 42.4] / [12.1, 41.3] HU. Percent absolute difference of local noise was small (mean ± standard deviation): liver 4.1%±3.1%, fat 4.6%±3.1%. Noise frequency distribution was close to the reference (mean per case): SCM ≥ 0.92, SAM ≤ 0.22. Additionally, PALETTE outperformed all baseline models in visual inspection and quantitative comparison. Conclusion PALETTE can provide high‐quality image domain noise insertion for simulating accurate low‐dose CT images created with a commercial non‐linear reconstruction algorithm.
Spectral performance for iodine quantification of a dual‐source, dual‐kV photon counting detector CT
Winfree, Tim N., Treb, Kevin , Leng, Shuai, Winfree, Tim, McCollough, Cynthia, Treb, Kevin , McCollough, Cynthia H. , Leng, Shuai

Medical Physics | February 10, 2025 | Volume: 52 | Issue: 5 | Pages: 2824-2831

10.1002/mp.17679 Get It

Abstract Background Multi‐energy CT (MECT) enables quantification of material concentrations by measuring linear attenuation coefficient line integrals with multiple x‐ray spectra. Photon counting detector (PCD)‐CT utilizes a detector‐based approach for MECT that can suffer from substantial spectral overlap, resulting in amplified material quantification noise. Dual‐source dual‐kV approaches for MECT are currently utilized in some energy‐integrating detector (EID)‐CT systems and can potentially be utilized with PCD‐CT for improved spectral separation. Purpose To evaluate the iodine quantification performance of a novel dual‐source (DS)‐PCD‐CT scan mode and compare to single‐source (SS)‐PCD‐CT and DS‐EID‐CT. Materials and Methods A 30 cm × 40 cm solid water phantom with four iodine inserts (2, 5, 10, and 15 mg/mL) was scanned with the three spectral modalities: SS‐PCD‐CT with two energy thresholds, DS‐PCD‐CT (90/Sn150 kV), and DS‐EID‐CT (90/Sn150 kV). For each modality, full‐dose (12 mGy) and half‐dose scans were acquired, and images were reconstructed with filtered back‐projection using a quantitative (Qr40) kernel. When scanning in a DS configuration, the total radiation dose budget is split between two detectors, increasing the strength of a signal‐dependent filter compared to a SS acquisition. To account for this effect, the modulation transfer function (MTF) for each modality was measured from a 0.05 mm tungsten wire. A linear spatial filter was applied to the SS images to match their MTF to that of the DS images. The resulting high‐ and low‐energy images were input into an image‐domain least squares material decomposition algorithm with iodine and water as the two basis materials. Iodine quantification accuracy and noise measured from the iodine basis images were used as figures of merit, and t‐tests used to compare between modalities. Results The 10% MTF cutoffs were 0.56, 0.57, 0.60, and 0.57 lp/mm for DS‐EID‐CT, DS‐PCD‐CT, SS‐PCD‐CT, and SS‐PCD‐CT after MTF‐matching, respectively, with the SS‐PCD‐CT MTF cutoff dropping to 0.58 lp/mm at half‐dose. Without accounting for the signal‐dependent filter by matching the MTFs, the noise in iodine material basis images from SS‐PCD‐CT was 10% higher than that of DS‐EID‐CT. After matching the MTFs, the noise in the SS‐PCD‐CT iodine image was 9%–22% lower than that of the DS‐EID‐CT. The lowest iodine image noise was from the DS‐PCD‐CT, which was 39%–41% lower than the DS‐EID‐CT. The DS‐PCD‐CT noise magnitude was significantly different from the other modalities. Mean iodine quantification accuracy across all measured concentrations was within 5% for all modalities at full dose, but was only below 5% for the DS‐PCD‐CT at half‐dose. Conclusions SS‐PCD‐CT with two energy thresholds outperformed DS‐EID‐CT in terms of image noise in iodine basis images when spatial resolution was matched. DS‐PCD‐CT gave the lowest noise due to the combination of PCD technology and improved spectral separation from the different x‐ray spectra.
Opportunistic Bone Mineral Density Measurement Using Photon-Counting Detector CT Spectral Localizer Images: A Prospective Study
Sadaney, Ahmed O El , Ferrero, Andrea , Jasper, Sören , Mazza, Gina L. , Shanblatt, Elisabeth R. , Nowak, Tristan , El Sadaney, Ahmed O , Mazza, Gina L , Rajendran, Kishore , Broski, Stephen M. , Fletcher, Joel G. , McCollough, Cynthia H. , Baffour, Francis

American Journal of Roentgenology | October 30, 2024 | Volume: 224 | Issue: 1 | Pages: No page available

10.2214/ajr.24.31909 Get It

Feasibility of thin-slice, low noise images created using multi-kernel synthesis to replace multiple image series in head CT
Diehn, Felix E. , Nagelschneider, Alex A. , Passe, Theodore J. , Nelson, Brandon , Cardona, Daniel Gomez , Huber, Nathan R. , Missert, Andrew D, Yu, Lifeng , Johnson, Matthew P. , Holmes, David R. , Lee, Yong S. , Thorne, Jamison E. , Diehn, Felix E , DeLone, David R. , Nelson, Brandon J, Gomez Cardona, Daniel G , Thorne, Jamison E , Fletcher, Joel G , Inoue, Akitoshi , Missert, Andrew D, Yu, Lifeng , McCollough, Cynthia H. , Fletcher, Joel G.

Acta Radiologica | October 17, 2024 | Volume: 65 | Issue: 11 | Pages: 1411-1421

10.1177/02841851241280365 Get It

Background SynthesiZed Improved Resolution and Concurrent nOise reductioN (ZIRCON) is a multi-kernel synthesis method that creates a single series of thin-slice computed tomography (CT) images displaying low noise and high spatial resolution, increasing reader efficiency and minimizing partial volume averaging. Purpose To compare the diagnostic performance of a single set of ZIRCON images to two routine clinical image series using conventional CT head and bone reconstruction kernels for diagnosing intracranial findings and fractures in patients with trauma or suspected acute neurologic deficit. Material and Methods In total, 50 patients underwent clinically indicated head CT in the ER (15 normal, 35 abnormal cases). A non-reader neuroradiologist established the reference standard. Three neuroradiologists reviewed two routine clinical series (head and bone kernels) and a single ZIRCON series, detecting intracranial findings or fractures and rating confidence (0–100). Sensitivity, specificity, and jackknife free-response receiver operating characteristic (JAFROC) figure of merit (FOM) were compared (limit of non-inferiority: −0.10). Results ZIRCON and conventional images demonstrated comparable performance for fractures (sensitivity: 51.5% vs. 54.5%; specificity: 40.2% vs. 34.2%) and intracranial findings (sensitivity: 88.2% vs. 91.4%; specificity: 77.2% vs. 73.7%).The estimated difference of JAFROC FOM demonstrated ZIRCON non-inferiority for acute pathologies overall (0.003 [95% CI=−0.051–0.057]) and fractures (0.048 [95% CI=−0.050–0.145]) but not for intracranial findings alone (−0.024 [95% CI=−0.100–0.052]). Conclusion Thin-slice, low noise, and high spatial resolution images can be created to display intracranial findings and fractures replacing multiple images series in head CT with similar performance. Future studies in more patients and further algorithmic development are warranted.