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192 citation(s) found for "Fu, Shuai".

Optimizing Web-Based Viewer of 4D CT Scans for Clinical Assessment of Injured Wrists
Holmes, David R., Thoreson, Andrew R., Breighner, Ryan E., Kakar, Sanjeev, Moran, Steven L., Leng, Shuai, Zhao, Kristin D., Zhao, Kristin D. , Trentadue, Taylor P , Holmes, David R., Thoreson, Andrew R., Breighner, Ryan E., Kakar, Sanjeev, Moran, Steven L., Leng, Shuai, Zhao, Kristin D.

2021 43rd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) | December 9, 2021 | Volume: No volume available | Issue: No issue available | Pages: 2405-2408

10.1109/embc46164.2021.9629999 | PMID 34891766 Get It

Improving ultrasonic evaluation of osteochondritis dissecans using a cadaveric model
Holmes, Philip M. , Chen, Kun-Hui , Lee, Hyungkyi, Leng, Shuai , Fitzsimmons, James S. , O’Driscoll, Shawn W. , Urban, Matthew W.

The Journal of the Acoustical Society of America | November 18, 2021 | Volume: 150 | Issue: 4_Supplement | Pages: A88-A88

10.1121/10.0007720 Get It

Osteochondritis dissecans (OCD) is a joint disease that is prevalent among youth athletes. Medical ultrasound is currently limited in its ability to detect and monitor OCD due to limitations of current Delay-and-Sum (DAS) reconstruction algorithms. In this work, we used a Delay-Multiply-and-Sum (DMAS) reconstruction algorithm to improve medical ultrasound’s ability to diagnose OCD. We artificially generated OCD lesions in unfixed cadaveric elbows and imaged them with a research ultrasound machine. We also imaged these cadaveric limbs with x-ray computed tomography (CT) with a high-resolution acquisition. These CT images were used as a gold standard for OCD geometry. We reconstructed the ultrasound images using both DAS and DMAS algorithms and compared them quantitatively by taking several profiles across the images of the artificial OCD lesions. The image metrics that we measured within these profiles were OCD lesion contrast, bone interface clarity, and lesion crack thickness accuracy. We found that the DMAS algorithm improved OCD lesion contrast by up to 26% when compared to DAS. We also found that the DMAS algorithm reduced the variability of bone interface clarity overall. Future work will involve an in vivo study, as well as optimization, of the DMAS algorithm for OCD lesion imaging.
Deep‐learning model observer for a low‐contrast hepatic metastases localization task in computed tomography
Gong, Hao , Heiken, Jay P. , Wells, Michael , Yu, Lifeng , Wells, Michael L, Fletcher, Joel G. , Leng, Shuai , McCollough, Cynthia H. , Yu, Lifeng

Medical Physics | November 18, 2021 | Volume: 49 | Issue: 1 | Pages: 70-83

10.1002/mp.15362 | PMID 34792800 Get It

AbstractPurposeConventional model observers (MO) in CT are often limited to a uniform background or varying background that is random and can be modeled in an analytical form. It is unclear if these conventional MOs can be readily generalized to predict human observer performance in clinical CT tasks that involve realistic anatomical background. Deep‐learning‐based model observers (DL‐MO) have recently been developed, but have not been validated for challenging low contrast diagnostic tasks in abdominal CT. We consequently sought to validate a DL‐MO for a low‐contrast hepatic metastases localization task.MethodsWe adapted our recently developed DL‐MO framework for the liver metastases localization task. Our previously‐validated projection‐domain lesion‐/noise‐insertion techniques were used to synthesize realistic positive and low‐dose abdominal CT exams, using the archived patient projection data. Ten experimental conditions were generated, which involved different lesion sizes/contrasts, radiation dose levels, and image reconstruction types. Each condition included 100 trials generated from a patient cohort of 7 cases. Each trial was presented as liver image patches (160×160×5 voxels). The DL‐MO performance was calculated for each condition and was compared with human observer performance, which was obtained by three sub‐specialized radiologists in an observer study. The performance of DL‐MO and radiologists was gauged by the area under localization receiver‐operating‐characteristic curves. The generalization performance of the DL‐MO was estimated with the repeated twofold cross‐validation method over the same set of trials used in the human observer study. A multi‐slice Channelized Hoteling Observers (CHO) was compared with the DL‐MO across the same experimental conditions.ResultsThe performance of DL‐MO was highly correlated to that of radiologists (Pearson's correlation coefficient: 0.987; 95% CI: [0.942, 0.997]). The performance level of DL‐MO was comparable to that of the grouped radiologists, that is, the mean performance difference was ‐3.3%. The CHO performance was poorer than the grouped radiologist performance, before internal noise could be added. The correlation between CHO and radiologists was weaker (Pearson's correlation coefficient: 0.812, and 95% CI: [0.378, 0.955]), and the corresponding performance bias (‐29.5%) was statistically significant.ConclusionThe presented study demonstrated the potential of using the DL‐MO for image quality assessment in patient abdominal CT tasks.
A Pilot Study to Estimate the Impact of High Matrix Image Reconstruction on Chest Computed Tomography
Johnson, Tucker F. , Voß, Benjamin, Lee, Yong S. , Koo, Chi Wan , McCollough, Brian, Weaver, Jayse , Gong, Hao , Carter, Rickey E. , Inoue, Akitoshi , Voss, Benjamin A, McCollough, Brian D, Weaver, Jayse M, Carter, Rickey E , Leng, Shuai , McCollough, Cynthia H. , Fletcher, Joel G.

Journal of Clinical Imaging Science | September 30, 2021 | Volume: 11 | Issue: No issue available | Pages: 52

10.25259/jcis_143_2021 | PMID 34621597 Get It

Objectives: The objectives of the study were to estimate the impact of high matrix image reconstruction on chest computed tomography (CT) compared to standard image reconstruction. Material and Methods: This retrospective study included patients with interstitial or parenchymal lung disease, airway disease, and pulmonary nodules who underwent chest CT. Chest CT images were reconstructed using high matrix (1024 × 1024) or standard matrix (512 × 512), with all other parameters matched. Two radiologists, blinded to reconstruction technique, independently examined each lung, viewing image sets side by side and rating the conspicuity of imaging findings using a 5-point relative conspicuity scale. The presence of pulmonary nodules and confidence in classification of internal attenuation was also graded. Overall image quality and subjective noise/artifacts were assessed. Results: Thirty-four patients with 68 lungs were evaluated. Relative conspicuity scores were significantly higher using high matrix image reconstruction for all imaging findings indicative of idiopathic lung fibrosis (peripheral airway visualization, interlobular septal thickening, intralobular reticular opacity, and end-stage fibrotic change; P ≤ 0.001) along with emphysema, mosaic attenuation, and fourth order bronchi for both readers (P ≤ 0.001). High matrix reconstruction did not improve confidence in the presence or classification of internal nodule attenuation for either reader. Overall image quality was increased but not subjective noise/artifacts with high matrix image reconstruction for both readers (P < 0.001). Conclusion: High matrix image reconstruction significantly improves the conspicuity of imaging findings reflecting interstitial lung disease and may be useful for diagnosis or treatment response assessment.
An interactive eye‐tracking system for measuring radiologists' visual fixations in volumetric CT images: Implementation and initial eye‐tracking accuracy validation
Gong, Hao , Hsieh, Scott S. , Holmes, David R. , Cook, David A. , Bartlett, David J. , Baffour, Francis , Takahashi, Hiroaki , Yu, Lifeng , Inoue, Akitoshi , Baffour, Francis I , Leng, Shuai , Yu, Lifeng , McCollough, Cynthia H. , Fletcher, Joel G. , Takahashi, Hiroaki

Medical Physics | September 17, 2021 | Volume: 48 | Issue: 11 | Pages: 6710-6723

10.1002/mp.15219 | PMID 34534365 Get It

AbstractPurposeEye‐tracking approaches have been used to understand the visual search process in radiology. However, previous eye‐tracking work in computer tomography (CT) has been limited largely to single cross‐sectional images or video playback of the reconstructed volume, which do not accurately reflect radiologists' visual search activities and their interactivity with three‐dimensional image data at a computer workstation (e.g., scroll, pan, and zoom) for visual evaluation of diagnostic imaging targets. We have developed a platform that integrates eye‐tracking hardware with in‐house‐developed reader workstation software to allow monitoring of the visual search process and reader‐image interactions in clinically relevant reader tasks. The purpose of this work is to validate the spatial accuracy of eye‐tracking data using this platform for different eye‐tracking data acquisition modes.MethodsAn eye‐tracker was integrated with a previously developed workstation designed for reader performance studies. The integrated system captured real‐time eye movement and workstation events at 1000 Hz sampling frequency. The eye‐tracker was operated either in head‐stabilized mode or in free‐movement mode. In head‐stabilized mode, the reader positioned their head on a manufacturer‐provided chinrest. In free‐movement mode, a biofeedback tool emitted an audio cue when the head position was outside the data collection range (general biofeedback) or outside a narrower range of positions near the calibration position (strict biofeedback). Four radiologists and one resident were invited to participate in three studies to determine eye‐tracking spatial accuracy under three constraint conditions: head‐stabilized mode (i.e., with use of a chin rest), free movement with general biofeedback, and free movement with strict biofeedback. Study 1 evaluated the impact of head stabilization versus general or strict biofeedback using a cross‐hair target prior to the integration of the eye‐tracker with the image viewing workstation. In Study 2, after integration of the eye‐tracker and reader workstation, readers were asked to fixate on targets that were randomly distributed within a volumetric digital phantom. In Study 3, readers used the integrated system to scroll through volumetric patient CT angiographic images while fixating on the centerline of designated blood vessels (from the left coronary artery to dorsalis pedis artery). Spatial accuracy was quantified as the offset between the center of the intended target and the detected fixation using units of image pixels and the degree of visual angle.ResultsThe three head position constraint conditions yielded comparable accuracy in the studies using digital phantoms. For Study 1 involving the digital crosshairs, the median ± the standard deviation of offset values among readers were 15.2 ± 7.0 image pixels with the chinrest, 14.2 ± 3.6 image pixels with strict biofeedback, and 19.1 ± 6.5 image pixels with general biofeedback. For Study 2 using the random dot phantom, the median ± standard deviation offset values were 16.7 ± 28.8 pixels with use of a chinrest, 16.5 ± 24.6 pixels using strict biofeedback, and 18.0 ± 22.4 pixels using general biofeedback, which translated to a visual angle of about 0.8° for all three conditions. We found no obvious association between eye‐tracking accuracy and target size or view time. In Study 3 viewing patient images, use of the chinrest and strict biofeedback demonstrated comparable accuracy, while the use of general biofeedback demonstrated a slightly worse accuracy. The median ± standard deviation of offset values were 14.8 ± 11.4 pixels with use of a chinrest, 21.0 ± 16.2 pixels using strict biofeedback, and 29.7 ± 20.9 image pixels using general biofeedback. These corresponded to visual angles ranging from 0.7° to 1.3°.ConclusionsAn integrated eye‐tracker system to assess reader eye movement and interactive viewing in relation to imaging targets demonstrated reasonable spatial accuracy for assessment of visual fixation. The head‐free movement condition with audio biofeedback performed similarly to head‐stabilized mode.
CT Noise-Reduction Methods for Lower-Dose Scanning: Strengths and Weaknesses of Iterative Reconstruction Algorithms and New Techniques
Mohammadinejad, Payam , Mileto, Achille , Yu, Lifeng , Leng, Shuai , Guimarães, Luís , Missert, A. , Jensen, Corey T. , Gong, Hao , McCollough, Cynthia H. , Fletcher, Joel G. , Guimaraes, Luis S , Missert, Andrew D , Fletcher, Joel G , McCollough, Cynthia H , Leng, Shuai , Mohammadinejad, Payam , Yu, Lifeng

RadioGraphics | September 1, 2021 | Volume: 41 | Issue: 5 | Pages: 1493-1508

10.1148/rg.2021200196 | PMID 34469209 Get It

A systems‐level analysis highlights microglial activation as a modifying factor in common epilepsies
Altmann, André , Ryten, Mina , Nunzio, Martina Di , Ravizza, Teresa , Reynolds, Regina H. , Somani, Alyma, Bacigaluppi, Marco , Iori, Valentina , Sapia, Rossella Di , Cerovic, Milica , Palma, Eleonora , Ruffolo, Gabriele , Botía, Juan A. , Absil, Julie , Alhusaini, Saud , Alvim, Marina K. M. , Auvinen, Pia, Bartolini, Emanuele , Bender, Benjamin , Bergo, Felipe P. G. , Bernardes, Tauana, Bernasconi, Andrea , Bernasconi, Neda , Bernhardt, Boris C. , Blackmon, Karen , Braga, Bárbara , Caligiuri, Maria Eugenia , Calvo, Anna, Carr, Sarah J. A. , Cavalleri, Gianpiero L. , Chen, Jian , Chen, Shuai , Cherubini, Andrea , Concha, Luis , David, Philippe, Delanty, Norman, Depondt, Chantal, Doherty, Colin P. , Domín, Martin , Foley, Sonya , França, Wendy, Gambardella, Antonio , Guerrini, Renzo , Hamandi, Khalid , Hibar, Derrek P., Isaev, Dmitry , Jahanshad, Neda , Kälviäinen, Reetta , Keller, Simon S. , Kotikalapudi, Raviteja , Kwan, Patrick , Langner, Sönke , Lenge, Matteo , Martin, Pascal , Meletti, Stefano , Morita‐Sherman, Marcia , Pariente, José C. , Richardson, Mark P. , Rummel, Christian , Saavalainen, Taavi, Semmelroch, Mira , Striano, Pasquale, Thesen, Thomas , Thomas, Rhys H. , Tondelli, Manuela , Vaudano, Anna Elisabetta , Vivash, Lucy , Podewils, Felix von , Wagner, Jan , Weber, Bernd , Wiest, Roland , Yasuda, Clarissa Lin , Zhang, Junsong , Group, ENIGMA‐Epilepsy Working, Leu, Costin , Avberšek, Andreja , Whelan, Christopher D. , Thompson, Paul M. , McDonald, Carrie R. , Di Sapia, Rossella , Bender, Benjamin , Severino, Mariasavina , Thom, Maria , Yasuda, Clarissa L , Doherty, Colin P , Cavalleri, Gianpiero L , Weber, Bernd , Thompson, Paul M , Richardson, Mark P , Guerrini, Renzo , Thomas, Rhys H , Leu, Costin , Tolomeo, Daniele , Micotti, Edoardo , Bargalló, Núria , Carlson, Chad , Cendes, Fernando , Devinsky, Orrin , Focke, Niels K. , Jackson, Graeme D. , Kochunov, Peter V , Kowalczyk, Magdalena A. , Kuzniecky, Ruben , Labate, Angelo , Liu, Min , Mascalchi, Mario , Morita, Márcia Elisabete , O’Brien, Terence J. , Rodríguez‐Cruces, Raúl , Tortora, Domenico , Zhang, Guohao , Group, ENIGMA‐Epilepsy Working, Vezzani, Annamaria , Sisodiya, Sanjay

Neuropathology and Applied Neurobiology | August 13, 2021 | Volume: 48 | Issue: 1 | Pages: No page available

10.1111/nan.12758 | PMID 34388852 Get It

Abstract Aims The causes of distinct patterns of reduced cortical thickness in the common human epilepsies, detectable on neuroimaging and with important clinical consequences, are unknown. We investigated the underlying mechanisms of cortical thinning using a systems‐level analysis. Methods Imaging‐based cortical structural maps from a large‐scale epilepsy neuroimaging study were overlaid with highly spatially resolved human brain gene expression data from the Allen Human Brain Atlas. Cell‐type deconvolution, differential expression analysis and cell‐type enrichment analyses were used to identify differences in cell‐type distribution. These differences were followed up in post‐mortem brain tissue from humans with epilepsy using Iba1 immunolabelling. Furthermore, to investigate a causal effect in cortical thinning, cell‐type‐specific depletion was used in a murine model of acquired epilepsy. Results We identified elevated fractions of microglia and endothelial cells in regions of reduced cortical thickness. Differentially expressed genes showed enrichment for microglial markers and, in particular, activated microglial states. Analysis of post‐mortem brain tissue from humans with epilepsy confirmed excess activated microglia. In the murine model, transient depletion of activated microglia during the early phase of the disease development prevented cortical thinning and neuronal cell loss in the temporal cortex. Although the development of chronic seizures was unaffected, the epileptic mice with early depletion of activated microglia did not develop deficits in a non‐spatial memory test seen in epileptic mice not depleted of microglia. Conclusions These convergent data strongly implicate activated microglia in cortical thinning, representing a new dimension for concern and disease modification in the epilepsies, potentially distinct from seizure control.
Full field-of-view, high-resolution, photon-counting detector CT: technical assessment and initial patient experience
Rajendran, Kishore , Petersilka, Martin, Henning, André , Shanblatt, Elisabeth R. , Marsh, Jeffrey F., Thorne, Jamison E. , Schmidt, Bernhard , Flohr, Thomas , Marsh, Jeffrey, Thorne, Jamison, Fletcher, Joel, McCollough, Cynthia, Rajendran, Kishore , Fletcher, Joel G. , McCollough, Cynthia H. , Leng, Shuai

Physics in Medicine & Biology | July 16, 2021 | Volume: 66 | Issue: 20 | Pages: 205019

10.1088/1361-6560/ac155e | PMID 34271558 Get It

Abstract We report a comprehensive evaluation of a full field-of-view (FOV) photon-counting detector (PCD) computed tomography (CT) system using phantoms, and qualitatively assess image quality in patient examples. A whole-body PCD-CT system with 50 cm FOV, 5.76 cm z-detector coverage and two acquisition modes (standard: 144 × 0.4 mm collimation and ultra-high resolution (UHR): 120 × 0.2 mm collimation) was used in this study. Phantoms were scanned to assess image uniformity, CT number accuracy, noise power spectrum, spatial resolution, material decomposition and virtual monoenergetic imaging (VMI) performance. Four patients were scanned on the PCD-CT system with matched or lower radiation dose than their prior clinical CT scans performed using energy-integrating detector (EID) CT, and the potential clinical impact of PCD-CT was qualitatively evaluated. Phantom results showed water CT numbers within ±5 HU, and image uniformity measured between peripheral and central regions-of-interests to be within ±5 HU. For the UHR mode using a dedicated sharp kernel, the cut-off spatial frequency was 40 line-pairs cm −1 , which corresponds to a 125 μ m limiting in-plane spatial resolution. The full-width-at-half-maximum for the section sensitivity profile was 0.33 mm for the smallest slice thickness (0.2 mm) using the UHR mode. Material decomposition in a multi-energy CT phantom showed accurate material classification, with a root-mean-squared-error of 0.3 mg cc −1 for iodine concentrations (2–15 mg cc −1 ) and 14.2 mg cc −1 for hydroxyapatite concentrations (200 and 400 mg cc −1 ). The average percent error for CT numbers corresponding to the iodine concentrations in VMI (40–70 keV) was 2.75%. Patient PCD-CT images demonstrated better delineation of anatomy for chest and temporal bone exams performed with the UHR mode, which allowed the use of very sharp kernels not possible with EID-CT. VMI and virtual non-contrast images generated from a patient head CT angiography exam using the standard acquisition mode demonstrated the multi-energy capability of the PCD-CT system.
Noninvasive high-frequency oscillations riding spikes delineates epileptogenic sources
Cai, Zhengxiang , Sohrabpour, Abbas , Jiang, Haiteng , Joseph, Boney , Brinkmann, Benjamin H. , He, Bin , Joseph, Boney , He, Bin , Brinkmann, Benjamin H , Ye, Shuai , Worrell, Gregory A.

Proceedings of the National Academy of Sciences | April 19, 2021 | Volume: 118 | Issue: 17 | Pages: No page available

10.1073/pnas.2011130118 | PMID 33875582 Get It

Significance Millions of people affected by epilepsy may undergo surgical resection of the epileptic tissues to stop seizures if such epileptic foci can be accurately delineated. High-frequency oscillations (HFOs), existing in electroencephalography, are highly correlated with epileptic brain, which is promising for guiding successful neurosurgery. However, it is unclear whether and how pathological HFOs can be differentiated to localize the epileptogenic tissues given the presence of various nonepileptic high-frequency activities. Here, we show morphological and source imaging evidence that pathological HFOs can be identified by the concurrence of epileptiform spikes. We describe a framework to delineate the underlying epileptogenicity using this biomarker. Our work may offer translational tools to improve treatments by noninvasively demarking pathological activities and hence epileptic foci.