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Emerging Technologies in Proteomics: Insights from the HUPO ETC Webinar Series
Chazarin, Blandine , Chatterjee, Sayantani , Collins, Ben C. , Fert‐Bober, Justyna , Huang, Shixia, Kundu, Deepti J , Lin, Qingsong , Liu, Yansheng , Saba, Julian, Low, Teck Yew , Sabidó, Eduard , Searle, Brian C. , Palmisano, Giuseppe

Journal of Proteome Research | January 2, 2026 | Volume: 25 | Issue: 1 | Pages: 1-3

10.1021/acs.jproteome.5c01013 | PMID 41479349 Get It

Artificial intelligence for aortic valve calcium score quantification by echocardiography
López-Gutiérrez, Pere , Morales-Galán, Alberto, Galián-Gay, Laura , Dux-Santoy, Lydia, Craig, Neil, Ye, Z, Bermejo, Javier , Calvo, Francisco , Ferrer, Elena, Carmona, J. Medina , Saura, Daniel, Foley, Thomas A. , Ferreira-González, Ignacio, Dweck, Marc R, Evangelista, Arturo , Teixido-Tura, Gisela , Rodriguez-Palomares, José Fernando, Guala, Andrea, Bermejo, Javier , Craig, Neil , Craig, Neil J , Garrido, J. Aparicio , Dux‐Santoy, Lydia , Alegret, Josep Maria , Ferrer‐Sistach, Elena , Méndez, Irene , Carmona, Juan M. Robledo , Sanchez, Violeta M. , Sevilla, Teresa , Cuéllar, Hug , Ferreira‐González, Ignacio , Michelena, Héctor I. , Dweck, Marc Richard , Guala, Andrea

No container title available | January 1, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.64898/2025.12.26.25343075 Get It

Abstract Background Aortic valve calcification (AVC), as measured by gold-standard computed tomography (CT) Agatston score, provides an anatomic assessment of aortic stenosis (AS) severity and is a key predictor of AS progression and need for valve replacement. AVC detection and quantification from transthoracic echocardiography (TTE) could expand AS early diagnosis and risk stratification, currently limited by CT availability and radiation exposure. Methods A multi-view video-based deep learning framework was developed using 1166 TTE aortic valve videos from 187 TTE studies acquired in 110 patients with available AVC score by CT. EchoAVC architecture includes a feature extraction model followed by a quality-aware model that aggregates video-level information to obtain patient-level predictions for AVC detection and quantification (score). The framework was validated internally with 173 TTE studies from 86 patients across seven centres, and externally using 430 TTE studies from 280 patients across four different centres. The associations between EchoAVC estimations and AS severity, progression, and need for aortic valve replacement were examined. Results EchoAVC demonstrated excellent performance in AVC detection (AUROC 0.98, accuracy 94.4%), and quantification (R = 0.64) in the external multi-centre testing set. EchoAVC score was correlated with echocardiographic AS severity descriptors, including aortic valve mean pressure gradient (ρ = 0.749) and peak velocity (ρ = 0.757), and predicted future increase in mean pressure gradient (ρ = 0.382), peak velocity (ρ = 0.433) and calcium score by CT (ρ = 0.650). In 361 patients followed for a median of 3.8 years, 139 underwent aortic valve replacement. Baseline presence and extent of AVC as predicted by EchoAVC showed strong risk-stratification power for aortic valve replacement, remarkably in line with those obtained by CT, and incremental over TTE AS descriptors. EchoAVC was further tested in routine clinical practice images, confirming strong associations with AS severity and progression, including stratification for incident AS in previously unaffected individuals (p<0.001). Conclusions EchoAVC enables accurate and non-invasive detection and quantification of AVC, offering substantial diagnostic and prognostic value for aortic stenosis progression and need for valve replacement. This technique holds promise as a scalable tool for early detection and clinical management of aortic valve stenosis. Clinical Perspective What Is New? * Aortic valve calcification can be detected and quantified on standard, two-dimensional transthoracic echocardiography * EchoAVC score is associated with echocardiographic metrics of aortic stenosis severity * EchoAVC predicts progressive increase in aortic stenosis severity and need for aortic valve replacement What Are the Clinical Implications? * This openly available deep learning framework can be used to estimate aortic valve calcium in patients at risk of or presenting aortic stenosis to predict aortic stenosis progression * EchoAVC may help identify patients likely to have high aortic valve calcium and prioritize them for confirmatory CT assessment, thereby supporting earlier identification of calcific aortic valve disease in clinical pathways.
Feasibility of ferumoxytol-enhanced MRI for detection of gastrointestinal bleeding when conventional evaluation is negative
Wells, Michael , Fidler, Jeff L. , Wells, Michael L , Fidler, Jeff L.

Radiology Advances | January 1, 2026 | Volume: 3 | Issue: 1 | Pages: No page available

10.1093/radadv/umaf043 | PMID 41768121 Get It

Abstract Background The evaluation of gastrointestinal (GI) bleeding is frequently negative despite a prolonged workup involving several different radiologic and endoscopic tests. Ferumoxytol, a superparamagnetic iron oxide agent used for treatment of iron deficiency anemia, can be used off-label as a blood pool contrast agent at MRI. Purpose To perform a proof-of-concept study to determine if ferumoxytol-enhanced MRI (FeMRI) can be performed to assist in detecting the presence and location of GI bleeding in patients who have undergone a negative standard evaluation. Methods A retrospective convenience cohort of patients examined with FeMRI at a single center over a 2-year period was evaluated. Inclusion criteria included clinical suspicion for slow or intermittent, active GI bleeding not localized following conventional testing. Exclusion criteria included any allergy to ferumoxytol or iron-containing agents, additional MRI scans scheduled within the following 72 hours, current pregnancy or breastfeeding, history of medication-related hypotensive episodes not related to an acute illness, syncopal events, arrhythmia, or low resting blood pressure. The patient’s clinical characteristics, examination results, and outcome during their hospital stay were examined. Results Five males and 1 female with average age of 66 years (range, 37-79 years) were imaged with FeMRI. All had undergone full diagnostic evaluation of the GI tract including upper and lower endoscopy and small bowel evaluation with imaging and/or endoscopic testing; in all patients, repeated rounds of testing were performed. Diagnostic images were obtained in all patients who underwent FeMRI. In 4/6 (67%) patients, FeMRI demonstrated active bleeding in the small bowel (n = 3) and colon (n = 1). Conclusion FeMRI was able to demonstrate the presence and location of active GI bleeding in hospitalized patients with previous extensive negative evaluation. FeMRI should be further evaluated to determine its performance characteristics as an examination in evaluating patients with GI bleeding.
Purified Exosome Product Enhances Tendon-Bone Healing in a Rat Rotator Cuff Repair Model
Zhao, Gongyin, Tsukamoto, Ichiro, Yousefi, Farbod , Moran, Steven L., Sanchez-Sotelo, Joaquin L., Zhao, Chunfeng, Zhao, Gongyin , Tsukamoto, Ichiro , Sanchez-Sotelo, Joaquin, Moran, Steven L. , Behfar, Atta , Sánchez‐Sotelo, Joaquín , Zhao, Chunfeng

The American Journal of Sports Medicine | January 1, 2026 | Volume: 54 | Issue: 1 | Pages: 162-173

10.1177/03635465251395275 | PMID 41476411 Get It

Background: Tendon-bone healing after rotator cuff injury is, or remains, a clinical challenge. Purpose: To examine the role of intraoperative use of purified exosome products (PEPs) in the treatment of rotator cuff injuries and to assess the effect of PEP on supraspinatus tendon-bone healing after rotator cuff repair in a rat model. Study Design: Controlled laboratory study. Methods: This study used 120 Sprague-Dawley rats that underwent an acute supraspinatus tendon transection from the insertion, followed by repair using a single transosseous suture. They were divided into 3 groups: a control group that received only sutures, a TISSEEL group that used a commercially available fibrin sealant patch (TISSEEL) of approximately 0.5 cm 2 , and a PEP-TISSEEL group that used a similarly sized TISSEEL patch combined with PEP. Autopsies were performed at 1, 3, 6, and 8 weeks after surgery. Analyses were performed using molecular biological, biomechanical, and histological techniques. Results: At 6 weeks, the PEP-TISSEEL group achieved greater failure load (mean, 27.5 ± 5.3 N) than the control (mean, 16.4 ± 4.2 N; P = .012) and TISSEEL (mean, 23.4 ± 5.0 N; P = .041) groups, with superiority persisting at 12 weeks (27.2 ± 6.5 N vs 13.1 ± 2.6 N [ P = .002] for the control group and 21.1 ± 5.8 N [ P = .037] for the TISSEEL group). DigiGait showed earlier recovery of stride length and paw angle. Histology revealed organized collagen and reduced scarring, while molecular assays demonstrated early inflammatory modulation with subsequent upregulation of collagen type 1 or 3 and TGF-β, supporting accelerated tendon-bone healing. Conclusion: Intraoperative application of PEP-TISSEEL enhanced tendon-bone healing in a rat model by improving biomechanical strength, promoting enthesis-specific histological regeneration, and accelerating functional recovery as evidenced by gait analysis. Clinical Relevance: The intraoperative application of PEP combined with TISSEEL significantly enhances rotator cuff tendon healing by modulating early inflammation, promoting collagen synthesis, and improving biomechanical properties in a rat model. These findings suggest that PEP-based therapies could offer a promising adjunct in surgical repair, potentially reducing retear rates and improving functional outcomes in patients with rotator cuff injuries. Further clinical studies are warranted to translate these benefits into human applications.
Outreach Models for Substance Use Disorder in Homeless Populations: A Systematic Review and Network Meta-Analysis
Ghafouri, Mohammad , Meyerhoefer, Terence, Ali, Dina N., Gregory, Jessica, Taylor-Desir, Monica, Rummans, Teresa A. , Costa, Sabrina Corrêa da , Ali, Dina N. , Correa da Costa, Sabrina, Meyerhoefer, Terence, Gregory, Jessica, Taylor-Desir, Monica

Psychiatric Services | January 1, 2026 | Volume: 77 | Issue: 1 | Pages: 58-65

10.1176/appi.ps.20250118 | PMID 41476321 Get It

Total elbow arthroplasty for the management of post-traumatic sequelae of distal humeral fractures
Fossum, Bradley W., O'Driscoll, Shawn W., Sanchez-Sotelo, Joaquin L., Rudisill, Samuel S. , You, Daniel Z, Sanchez-Sotelo, Joaquin, You, Daniel , Fossum, Bradley W. , O’Driscoll, Shawn W. , Tangtiphaiboontana, Jennifer , Sánchez‐Sotelo, Joaquín , Morrey, Mark E.

The Bone & Joint Journal | January 1, 2026 | Volume: 108-B | Issue: 1 | Pages: 21-29

10.1302/0301-620x.108b1.bjj-2025-0475.r1 | PMID 41475369 Get It

Aims Total elbow arthroplasty (TEA) has shown favourable outcomes in the management of severely comminuted distal humeral fractures in low-demand elderly patients, leading to its increased use in recent years. Less is known about the outcomes of TEA when used for the failure of either internal fixation or conservative management, particularly whether not performing TEA acutely influences the options for further management if fixation fails. This systematic review aimed to assess the clinical and functional outcomes following TEA when used for the post-traumatic sequelae of a distal humeral fracture, and to compare these outcomes with those in patients with a distal humeral fracture who undergo TEA acutely. Methods MEDLINE, Embase, Cochrane Central Register of Controlled Trials, and Scopus databases were searched from January 2000 to September 2024 for studies reporting complications, reoperations, the range of motion of the elbow, or functional outcomes following the use of TEA in the management of the post-traumatic sequelae of distal humeral fractures, including those due to failed fixation, nonunion, and post-traumatic arthritis. Demographic and clinical data were collected, descriptive statistics were summarized, and meta-analyses were undertaken to compare the outcomes between salvage and acute TEA. Results A total of 16 studies were included, with a total of 380 patients who underwent salvage TEA and 251 who underwent TEA as the initial management. Salvage TEA was associated with a significantly higher overall risk of complications (odds ratio (OR) 2.5 (95% CI 1.0 to 5.9)), though the rate of reoperations did not differ from those who underwent TEA acutely (OR 1.4 (95% CI 0.8 to 2.4)). Pooled analyses revealed a similar postoperative range of flexion (mean difference (MD) -2.4° (95% CI -9.1 to 4.3)) and extension of the elbow (MD 1.1° (95% CI -2.3 to 4.5)) and pronation (MD 0.0° (95% CI -1.1 to 1.1)) and supination (MD -0.0° (95% CI -1.0 to 0.9)) of the forearm. However, salvage TEA showed significantly inferior functional outcomes, as assessed by the Mayo Elbow Performance Score (MD 9.7 (95% CI -18.8 to -0.6)). Conclusion These findings indicate that salvage TEA represents a viable option for the management of post-traumatic sequelae following the teatment of a distal humeral fracture, although patients who underwent salvage TEA had a significantly increased rate of complications and significantly inferior functional outcomes compared with those who underwent TEA acutely. Cite this article: Bone Joint J 2026;108-B(1):21–29.
Age- and Sex-Adjusted Myocardial Flow Reserve Percentiles for Personalized Cardiovascular Risk Assessment
Joseph, Lee , Trinquart, Ludovic , Lopez, Diana M. , Brandao, Simone , Brown, Jenifer M. , Divakaran, Sanjay , Huck, Daniel , Weber, Brittany N, Goldstein, Leanne Barrett , Hainer, J., Carre, Sylvain , Lemley, M A R K, Orozco, Giselle Ramirez, Blankstein, R., Dorbala, Sharmila, Alexanderson, Erick, Carvajal-Juarez, Isabel, Mason, Steve, Wopperer, Samuel, Rosamond, Thomas, Buechel, Ronny R. , Al-Mallah, Mouaz H, Travin, Mark I. , Berman, Daniel, Dey, D A M I N I, Slomka, PJ, Carli, M. Di, Dey, Damini , Divakaran, Sanjay , Hainer, Jon , Carvajal-Juarez, Isabel , Joseph, Lee , Hainer, Jon , Blankstein, Ron , Dorbala, Sharmila , Alexanderson, Erick , Carvajal-Juarez, Isabel , Acampa, Wanda , Packard, Rene R S , Rosamond, Thomas L , Buechel, Ronny R , Einstein, Andrew Jeffrey , Al-Mallah, Mouaz H , Slipczuk, Leandro , Slomka, Piotr J , Dey, Damini , Lopez, Diana M., Soares Brandão, Simone Cristina , Brown, Jenifer Michelle , Lemley, Mark , Liang, Jiaming , Packard, René R. Sevag , Le, Viet T. , Mason, Steve, Knight, Stacey , Chareonthaitawee, Panithaya , Wopperer, Samuel, Al‐Mallah, Mouaz H. , Slipczuk, Leandro , Berman, Daniel S.

No container title available | December 31, 2025 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.64898/2025.12.30.25343223 | PMID 41503477 Get It

ABSTRACT Introduction Positron emission tomography (PET) myocardial flow reserve (MFR) is a robust indicator of coronary vascular health and a strong predictor of cardiovascular risk. Clinical guidelines typically use fixed MFR thresholds (e.g., <2.0) to stratify risk, yet this approach overlooks individual variation, particularly by age and sex. We aimed to establish age- and sex-adjusted MFR percentiles and to evaluate their prognostic and predictive performance for cardiovascular risk assessment, in comparison with conventional fixed-threshold MFR approach. Methods Using data from the REFINE PET registry (24,820 patients from 12 sites), we measured PET MFR and derived age- and sex-adjusted MFR reference percentiles using quantile regression in patients without known coronary artery disease. All patients were categorized into percentile-based quartile groups. The primary outcome for prognostic and prediction analyses was major adverse cardiovascular events (MACE), defined as all-cause mortality, myocardial infarction, or heart-failure hospitalization. Time-to-event associations were evaluated using covariate-adjusted survival models, with cumulative incidence and hazard ratios (HR) estimated at 1 and 5 years in the derivation dataset, an independent but similar validation dataset A, and a high-risk validation dataset B. Predictive performance for MACE was assessed using discrimination, calibration, and reclassification metrics, comparing percentile-based models with models using a fixed MFR threshold (<2.0). Results Among participants (mean age 66.5 years; median follow-up 3.6 years), age- and sex-adjusted MFR quartile groups were strong independent predictors of MACE, with adjusted HR increasing stepwise across quartile groups at both early and later follow-up. At 1 year, HR (95% CI) comparing the lowest to the highest quartile group were 4.06 (3.41–4.82) in the derivation cohort, 3.31 (2.32–4.71) in validation cohort A, and 2.35 (2.05–2.70) in validation cohort B. At 5 years, the corresponding HR were 2.18 (1.86–2.56), 1.77 (1.31–2.40), and 1.59 (1.36–1.86). Percentile-based models demonstrated consistently higher discrimination, better calibration, and greater net reclassification for MACE at both time points compared with fixed-threshold MFR models. Although 67.2% of patients had preserved MFR (>2.0), cardiovascular risk increased steadily across MFR percentiles even within this range. Conclusion Age- and sex-adjusted MFR percentiles provide a reliable, clinically actionable measure of vascular health, improving cardiovascular risk stratification by better capturing age- and sex-related heterogeneity in vascular risk. Compared with traditional fixed-threshold approaches, MFR percentiles demonstrate improved predictive performance for cardiovascular risk assessment across diverse patient populations. CLINICAL PERSPECTIVE What is new? In a large, multinational real-world registry of more than 24,000 patients undergoing PET MPI, we derived age- and sex-adjusted myocardial flow reserve (MFR) percentiles, establishing a lifespan-based reference framework with age-specific reference values. Age- and sex-adjusted MFR percentiles showed a strong, graded association with 1- and 5-year cardiovascular risk and demonstrated improved prognostic and predictive performance compared with fixed MFR thresholds and models without MFR across independent derivation and validation datasets, including a higher-risk cohort. Lower adjusted MFR percentiles were consistently associated with higher risk of major adverse cardiovascular events, including all-cause mortality, myocardial infarction, and heart-failure hospitalization. What are the clinical implications? Age- and sex-adjusted MFR percentiles provide a personalized, dynamic measure of coronary vascular health that improves cardiovascular risk stratification by accounting for age- and sex-related heterogeneity. A percentile-based approach may help clinicians better identify patients at elevated cardiovascular risk who may warrant closer monitoring or intensified preventive strategies, while avoiding unnecessary intervention in lower-risk individuals. By integrating macrovascular and microvascular dysfunction, age- and sex-adjusted MFR percentiles offer a clinically interpretable marker of vascular aging that may inform future research on aging biomarkers, novel therapeutics and cardiovascular risk assessment across the spectrum of atherosclerotic and microvascular disease.
Validation of 13,102 ICD-10-CM Codes Using a Large Language Model-Based System
Wang, Yichen, Song, Yilin , Siu, Rex K. , Nimma, Induja R., Yan, Yan, Savage, Thomas , Wang, Yiming, Li, Zhichen, Ramai, Daryl , Wang, Jiale , Badurdeen, Dilhana, Tao, Cui, Kumbhari, Vivek , Huang, Yuting, Huang, Yuting , Huang, Yuting , Wang, Jiale

No container title available | December 31, 2025 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.64898/2025.12.30.25343244 Get It

ABSTRACT Objective To comprehensively evaluate the validity of ICD-10-CM codes for both prevalent diagnoses and less common diseases, and to assess the performance of a large language model (LLM)-based system in validating these codes. Materials and Methods This retrospective study analyzed hospital admissions from the Medical Information Mart for Intensive Care (MIMIC-IV) database. We developed a validated LLM-based system using GPT-4o, refined through iterative prompt engineering, to assess ICD-10-CM code validity. We measured the PPV of ICD-10-CM codes, PPV of principal and secondary diagnoses, and the performance of an LLM-based system in code validation. Results Among 865,079 assigned codes, the PPV was 84.6% (95% CI, 84.5%-84.6%). Principal diagnoses had a PPV of 93.9% (95% CI, 93.7%-94.1%), while secondary diagnoses had a PPV of 83.8% (95% CI, 83.7%-83.9%). The LLM system demonstrated high performance in validating ICD codes, achieving 93.6% accuracy, 95.4% sensitivity and 85.2% specificity. Among correctly assigned secondary diagnoses, the majority (67.9%) represented historical or baseline conditions, while 32.1% reflected active conditions that deviated from baseline status; 22.3% of these emerged after hospital admission. PPV decreases with later diagnosis positions, with the largest decline occurring between principal and secondary diagnoses. Discussion and Conclusion In this large-scale evaluation, ICD-10-CM codes exhibited generally high accuracy, though variability existed by position and condition type. A validated LLM system performed comparably to physician review and offers a scalable means to improve coding accuracy. These findings support the potential for integrating LLM-based auditing into routine workflows to strengthen the quality of administrative and research data.