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141 citation(s) found for "Oh, Seung Mi".

Comprehensive Characterization of Alternative Polyadenylation in Human Cancer
Xiang, Yu , Ye, Youqiong , Lou, Yanyan , Zhang, Zhao , Chen, Ning-Yuan, Kim, Yoon-Jin , Ozguc, Fatma Muge, Diao, Lixia , Xia, Yang, Kellems, Rodney E. , Shyu, Ann‐Bin, Mills, Gordon B. , Han, Leng , Ye, Youqiong , Han, Leng , Mills, Gordon B , Yang, Yang , Cai, Chunyan C. , Mills, Tingting , Chen, Ning‐Yuan, Karmouty‐Quintana, Harry , Xia, Yang, Chen, Zheng , Blackburn, Michael R. , Yoo, Seung Hee

JNCI: Journal of the National Cancer Institute | September 25, 2017 | Volume: 110 | Issue: 4 | Pages: 379-389

10.1093/jnci/djx223 | PMID 29106591 Get It

Combined circulating tumor DNA and protein biomarker-based liquid biopsy for the earlier detection of pancreatic cancers
Javed, Ammar A. , Thoburn, Christopher J. , Wong, Fay , Tie, Jeanne , Allen, Peter J., Schattner, Mark , Petersen, Gloria M. , Hong, Seung‐Mo , Falconi, Massimo , Weiss, Matthew J. , Ahuja, Nita , He, Jin , Makary, Martin A. , Molin, Marco Dal , Li, Lu , Ptak, Janine , Dobbyn, Lisa , Silliman, Natalie , Hruban, Ralph H. , Wolfgang, Christopher L. , Papadopoulos, Nickolas , Kinzler, Kenneth W. , Vogelstein, Bert , Lennon, Anne Marie , Thoburn, Christopher , Javed, Ammar A , Tie, Jeanne , Lennon, Anne Marie , Cohen, Joshua D. , Gibbs, Peter , Schmidt, Christian Max , YIP-SCHNEIDER, Michele T. , Brand, Randall E. , Singhi, Aatur Dilip , Kim, Song Cheol , Doglioni, Claudio , Maitra, Anirban , Hanash, Samir , Wang, Yuxuan , Schaefer, Joy , Popoli, Maria , Goggins, Michael , Klein, Alison P. , Tomasetti, Cristian , Massimo, Falconi

Proceedings of the National Academy of Sciences | September 5, 2017 | Volume: 114 | Issue: 38 | Pages: 10202-10207

10.1073/pnas.1704961114 | PMID 28874546 Get It

Significance Few patients with pancreatic cancer survive longer than 5 y, in part because most patients are identified only after their disease has progressed to an advanced stage. In this study, we show how combining mutations in circulating tumor DNA (ctDNA) with protein markers can result in a screening test with improved sensitivity while retaining specificity. The combination of the ctDNA and protein markers was superior to any single marker. Moreover, the combination detected nearly two-thirds of pancreatic cancers that had no evidence of distant metastasis at the time of surgical resection. The strategy may represent an approach to detect cancers of many types at an earlier stage.
BRAF V600E Mutations Occur in a Subset of Glomus Tumors, and Are Associated With Malignant Histologic Characteristics
Dashti, Nooshin K. , Bahrami, Armita , Lee, Seung Joon , Jenkins, Sarah M. , Folpe, Andrew L. , Boland, Jennifer M. , Karamzadeh Dashti, Nooshin, Rodríguez, Fausto J.

American Journal of Surgical Pathology | August 22, 2017 | Volume: 41 | Issue: 11 | Pages: 1532-1541

10.1097/pas.0000000000000913 | PMID 28834810 Get It

Glomus tumors are rare mesenchymal neoplasms with a phenotype akin to the modified smooth muscle cells of the glomus body. Most are benign, but rare examples show malignant histologic characteristics and aggressive behavior. We recently encountered a malignant glomus tumor with BRAF V600E mutation. We sought to study a large cohort for this mutation, with particular attention to associated malignant histologic characteristics. Tumors were classified based on WHO criteria as benign, uncertain malignant potential (glomus tumors of uncertain malignant potential—GT-UMP), or malignant. Tumors were screened for BRAF V600E by immunohistochemistry, and positive staining was evaluated further by Sanger sequencing. A total of 102 glomus tumors were included and classified as benign (57, 56%), GT-UMP (15, 15%) and malignant (30, 29%). Tumors occurred in patients aged 8 to 89.9 years (median: 50.2), without sex predilection (55% men). Most occurred in the superficial soft tissue (84%) and upper extremities (55%). Six of 95 tested cases had BRAF V600E mutation (6%), including 0 of 57 benign tumors, 3 of 14 GT-UMP (21%), and 3 of 24 malignant tumors (12%). Follow-up was obtained for 59 cases (median: 75.7 mo, range: 7.8 to 268.5). Three of 11 malignant tumors (27%) had progressive disease: 1 with metastasis to brain and heart, 1 with enlarging residual disease, and 1 with recurrence. Two of 4 GT-UMP (50%) had progressive disease: 1 with metastasis to lung, and 1 with local recurrence (50%). Three of 44 benign tumors (7%) had local recurrence. Two of 5 patients with BRAF V600E had progression, including 1 GT-UMP with local recurrence and 1 malignant tumor with enlarging residual disease. In summary, BRAF V600E mutation was detected in 6% of glomus tumors, all of which were malignant or GT-UMP. This mutation may be associated with a malignant phenotype, although study of additional cases is needed. In patients with progressive disease, BRAF could be a promising therapeutic target.
Prognosis of Patients with Behavioral Variant Frontotemporal Dementia Who have Focal Versus Diffuse Frontal Atrophy
Lee, Jin San , Jang, Young Kyoung, Kim, Hee Jin, Seo, Sang Won , Lee, Juyoun , Kim, Yeo Jin , Park, Kyung-Won, Yoon, Soo Jin , Kim, Seung Hyun , Park, Key‐Chung , Knopman, David S. , Na, Duk L. , Jung, Na‐Yeon , Kim, Hee Jin, Lee, Jae‐Hong , Kim, Byeong Chae , Yoon, Soo Jin , Kim, SangYun , Kim, Eun‐Joo , Knopman, David S.

Journal of Clinical Neurology | July 26, 2017 | Volume: 13 | Issue: 3 | Pages: 234

10.3988/jcn.2017.13.3.234 | PMID 28748674 Get It

B0 concomitant field compensation for MRI systems employing asymmetric transverse gradient coils
Weavers, Paul T., Tao, Shengzhen , Trzasko, Joshua D. , Frigo, Louis M., Shu, Yunhong , Frick, Matthew A., Foo, Thomas , Bernstein, Matt A. , Bernstein, Matt A , Lee, Seung‐Kyun , Foo, Thomas K F

Magnetic Resonance in Medicine | June 22, 2017 | Volume: 79 | Issue: 3 | Pages: 1538-1544

10.1002/mrm.26790 | PMID 28639370 Get It

PurposeImaging gradients result in the generation of concomitant fields, or Maxwell fields, which are of increasing importance at higher gradient amplitudes. These time‐varying fields cause additional phase accumulation, which must be compensated for to avoid image artifacts. In the case of gradient systems employing symmetric design, the concomitant fields are well described with second‐order spatial variation. Gradient systems employing asymmetric design additionally generate concomitant fields with global (zeroth‐order or B0) and linear (first‐order) spatial dependence.MethodsThis work demonstrates a general solution to eliminate the zeroth‐order concomitant field by applying the correct B0 frequency shift in real time to counteract the concomitant fields. Results are demonstrated for phase contrast, spiral, echo‐planar imaging (EPI), and fast spin‐echo imaging.ResultsA global phase offset is reduced in the phase‐contrast exam, and blurring is virtually eliminated in spiral images. The bulk image shift in the phase‐encode direction is compensated for in EPI, whereas signal loss, ghosting, and blurring are corrected in the fast‐spin echo images.ConclusionA user‐transparent method to compensate the zeroth‐order concomitant field term by center frequency shifting is proposed and implemented. This solution allows all the existing pulse sequences—both product and research—to be retained without any modifications. Magn Reson Med 79:1538–1544, 2018. © 2017 International Society for Magnetic Resonance in Medicine.
A Phase II Clinical Trial of an Aromatase Inhibitor for Postmenopausal Women with Lymphangioleiomyomatosis
Lu, Calvin, Pappas, George P., Dilling, Daniel F. , Shifren, Adrian , Veeraraghavan, Srihari , Chapman, Jeffrey T., Parambil, Joseph G. , Ruoss, Stephen J. , Young, Lisa R. , Kopras, Elizabeth J. , Roads, Tammy, Krischer, Jeffrey P. , McCormack, Francis X. , McCormack, Francis X , Lu, Calvin, Lee, Hye Seung , Burger, Charles D. , Hammes, Stephen R.

Annals of the American Thoracic Society | June 1, 2017 | Volume: 14 | Issue: 6 | Pages: 919-928

10.1513/annalsats.201610-824oc | PMID 28570161 Get It

Abstract Rationale Lymphangioleiomyomatosis (LAM) is a progressive cystic lung disease that predominantly affects women and can worsen with pregnancy, estrogen treatment, and the menstrual cycle, suggesting an important role for estrogen in disease pathogenesis. Objectives To assess the efficacy and safety of the aromatase inhibitor letrozole in the treatment of LAM. Methods Seventeen postmenopausal women with LAM were enrolled in this phase II trial and randomized to receive letrozole 2.5 mg daily (n = 9) or placebo (n = 8) for a period of 12 months. Five patients in each group were also taking sirolimus at baseline and remained on the drug throughout the treatment period. Lung function, exercise capacity, quality of life, and serum vascular endothelial growth factor D (VEGF-D) were measured at baseline and at 3-month intervals. Results Fifteen patients completed the study. Two patients withdrew. There were no differences in adverse events in the letrozole and placebo groups. The target enrollment of 25 patients per arm was not met, so the efficacy of letrozole could not be assessed as planned. After adjusting for sirolimus use, we found that the rate of change in FEV1 for all subjects was −3 ± 3 ml/mo (P = 0.4), and for serum VEGF-D, the rate of change was −0.024 ± 0.009 pg/ml/mo (P = 0.015), showing a steeper decline in the letrozole group (−0.029 ± 0.013; P = 0.025). All patients who were taking sirolimus had a reduction in VEGF-D levels from baseline to the last visit, compared with only half of the patients who were not taking sirolimus. In a post hoc analysis, eight matched letrozole-treated–placebo-treated pairs were constructed, six of which demonstrated better FEV1 improvement for the letrozole-treated patients. Conclusions Letrozole treatment appears to be safe and well tolerated in postmenopausal patients with LAM, including those taking sirolimus. Enrollment in this trial was compromised by the publication of an effective treatment (sirolimus) in the same month as the study opened, resulting in limited power to detect treatment effects. Post hoc matched pairs exploration studies provide tentative support for additional studies of letrozole in LAM. Considering the reduced rate of lung function decline in postmenopausal patients, future studies will likely require enhanced study designs, such as selective enrollment of those with prognostic biomarkers predictive of decline. Clinical trial registered with www.clinicaltrials.gov (NCT01353209).
Echocardiographic diagnosis of total or left congenital pericardial absence with positional change
Kim, Hyung‐Kwan , Jung, Ji-Hyun, Yoon, Yeonyee E. , Park, Jun-Bin, Lee, Seung‐Pyo , Kim, Yong‐Jin , Cho, Goo-Young, Oh, Jae K. , Park, Jun‐Bean , Kim, Min-Jeong , Yoon, Yeonyee Elizabeth , Kim, Hack‐Lyoung , Cho, Goo-Young, Sohn, Daewon , Kim, Hyung-Kwan

Heart | March 9, 2017 | Volume: 103 | Issue: 15 | Pages: 1203-1209

10.1136/heartjnl-2016-310870 | PMID 28280147 Get It

Objectives Congenital absence of the pericardium (CAP) is often confused with other conditions presenting with right ventricular dilatation and usually warrants CT or cardiac MR (CMR) to confirm. It would be desirable to have more specific echocardiographic criteria to provide a conclusive diagnosis. Methods 11 patients who were diagnosed with CAP (four patients with total CAP) based on CT/CMR were consecutively enrolled. Thirteen patients with atrial septal defect (ASD) and 16 normal subjects served as controls. To investigate spatial changes of heart in the thoracic cavity in CAP, following echocardiographic measurements were made in the left and right decubitus positions: the angle between the ultrasound beam and the left ventricular posterior wall (Angle-PW) in end-diastole at the parasternal long axis, and the distance between the chest wall and the most distal part of the left ventricular posterior wall (Distance-PW) at the parasternal mid-ventricular short axis. Results Angle-PW in patients with CAP were significantly greater than in those with ASD (100.1±12.5° vs 74.5±8.6°, p<0.017) or in normal subjects (100.1±12.5° vs 69.9±7.6°, p<0.017) at the left decubitus, and the difference in Angle-PW according to posture (left vs right) was significantly greater in CAP compared with the other groups (CAP 20.7±12.7°, ASD 0.31±1.80°, normal 0.31±1.40°, all p<0.017). The differences in Distance-PW according to patient position (CAP 2.43±0.77°, ASD 0.42±0.45°, normal 0.26±0.55°) or cardiac cycle in each position (left: CAP 1.60±0.76°, ASD 0.41±0.27°, normal 0.17±0.12°; right: CAP 0.70±0.32°, ASD 0.22±0.19°, normal 0.22±0.13°) were significantly higher in the CAP group than in the other groups (all p<0.017). Conclusions Patients with CAP have dynamic alteration in cardiac position depending on posture, which is not observed in ASD or in normal controls. Hence, total or left-sided CAP can be reliably diagnosed with positional changes during routine echocardiography.
Gradient nonlinearity calibration and correction for a compact, asymmetric magnetic resonance imaging gradient system
Tao, Shengzhen , Trzasko, Joshua D. , Gunter, Jeffrey L. , Weavers, Paul T., Shu, Yunhong , Lee, Seung‐Kyun , Tan, Ek T. , Huston, John , Bernstein, Matt A. , Tan, Ek T

Physics in Medicine & Biology | December 29, 2016 | Volume: 62 | Issue: 2 | Pages: N18-N31

10.1088/1361-6560/aa524f | PMID 28033119 Get It

Abstract Due to engineering limitations, the spatial encoding gradient fields in conventional magnetic resonance imaging cannot be perfectly linear and always contain higher-order, nonlinear components. If ignored during image reconstruction, gradient nonlinearity (GNL) manifests as image geometric distortion. Given an estimate of the GNL field, this distortion can be corrected to a degree proportional to the accuracy of the field estimate. The GNL of a gradient system is typically characterized using a spherical harmonic polynomial model with model coefficients obtained from electromagnetic simulation. Conventional whole-body gradient systems are symmetric in design; typically, only odd-order terms up to the 5th-order are required for GNL modeling. Recently, a high-performance, asymmetric gradient system was developed, which exhibits more complex GNL that requires higher-order terms including both odd- and even-orders for accurate modeling. This work characterizes the GNL of this system using an iterative calibration method and a fiducial phantom used in ADNI (Alzheimer’s Disease Neuroimaging Initiative). The phantom was scanned at different locations inside the 26 cm diameter-spherical-volume of this gradient, and the positions of fiducials in the phantom were estimated. An iterative calibration procedure was utilized to identify the model coefficients that minimize the mean-squared-error between the true fiducial positions and the positions estimated from images corrected using these coefficients. To examine the effect of higher-order and even-order terms, this calibration was performed using spherical harmonic polynomial of different orders up to the 10th-order including even- and odd-order terms, or odd-order only. The results showed that the model coefficients of this gradient can be successfully estimated. The residual root-mean-squared-error after correction using up to the 10th-order coefficients was reduced to 0.36 mm, yielding spatial accuracy comparable to conventional whole-body gradients. The even-order terms were necessary for accurate GNL modeling. In addition, the calibrated coefficients improved image geometric accuracy compared with the simulation-based coefficients.
Detection of Parenchymal Abnormalities in Experimentally Induced Acute Pyelonephritis in Rabbits Using Contrast-Enhanced Ultrasonography, CT, and MRI
Kim, Seung Kwon , Seo, Jin Won , Ryu, Jeong Ah , Kim, Bohyun , Kim, Jong-Sung

Journal of the Korean Society of Radiology | November 30, 2016 | Volume: 75 | Issue: 6 | Pages: 487

10.3348/jksr.2016.75.6.487 Get It

Left Internal Mammary Artery Versus Coronary Stents: Impact on Downstream Coronary Stenoses and Conduit Patency
Matsuzawa, Yasushi , Sara, Jaskanwal Deep Singh , Kwon, Taek‐Geun , Sun, Tao , Lennon, Ryan J. , Bell, Malcolm R. , Daly, Richard C. , Lerman, Lilach O. , Locker, Chaim, Guddeti, Raviteja R, Sara, Jaskanwal D. S., Lee, Seung-Jin, Zhang, Ming , Guddeti, Raviteja , Liu, Zhi Hui , Lee, Seung Jin , Schaff, Hartzell V. , Lerman, Amir

Journal of the American Heart Association | September 25, 2016 | Volume: 5 | Issue: 9 | Pages: No page available

10.1161/jaha.116.003568 | PMID 27664803 Get It

Background The study compared downstream coronary and conduit disease progression in the left anterior descending coronary artery treated with coronary artery bypass grafting using the left internal mammary artery ( LIMA ) versus percutaneous coronary intervention with bare metal stent ( BMS ) or drug eluting stent ( DES ). Methods and Results A total of 12 301 consecutive patients underwent isolated primary coronary revascularization, of which 2386 met our inclusion criteria (Percutaneous coronary intervention, n=1450; coronary artery bypass grafting, n=936). Propensity score analysis matched 628 patients, of which 468 were treated to the left anterior descending with coronary artery bypass grafting with LIMA (n=314), percutaneous coronary intervention with BMS (n=94), and DES (n=60). Coronary angiograms were analyzed by quantitative coronary angiography ( QCA ; n=433). Cumulative downstream coronary and conduit disease progression were estimated by Kaplan–Meier method and effect of treatment type by Cox proportional hazard models. Patients treated with LIMA had significantly lower risk of downstream coronary disease progression at follow‐up angiogram compared with BMS and DES (hazard ratio [ HR ] [95% CI ], 0.34; [0.20–0.59]; P =0.0002; and HR [95% CI ], 0.39; [0.20–0.79]; P =0.01, respectively). LIMA was associated with a lower risk of conduit disease progression compared to BMS and DES ( HR [95% CI ], 0.18; [0.12–0.28]; P <0.001; and HR [95% CI ], 0.27; [0.16–0.46]; P <0.001, respectively). BMS was associated with higher HR for downstream coronary and conduit disease progression compared with DES , but the difference did not reach statistical significance ( HR [95% CI], 1.13; [0.57–2.36]; P =0.73; and HR [95% CI ], 1.46; [0.88–2.50]; P =0.14, respectively). Conclusions LIMA grafting to left anterior descending is associated with significantly lower risk of downstream coronary and conduit disease progression compared to percutaneous coronary intervention with BMS and DES .