Citations

ABSTRACT Understanding lung cancer evolution can identify tools for intercepting its growth. In a landscape analysis of 1024 lung adenocarcinomas (LUAD) with deep whole-genome sequencing integrated with multiomic data, we identified 542 LUAD that displayed diverse clonal architecture. In this group, we observed an interplay between mobile elements, endogenous and exogenous mutational processes, distinct driver genes, and epidemiological features. Our results revealed divergent evolutionary trajectories based on tobacco smoking exposure, ancestry, and sex. LUAD from smokers showed an abundance of tobacco-related C:G>A:T driver mutations in KRAS plus short subclonal diversification. LUAD in never smokers showed early occurrence of copy number alterations and EGFR mutations associated with SBS5 and SBS40a mutational signatures. Tumors harboring EGFR mutations exhibited long latency, particularly in females of European-ancestry (EU_N). In EU_N, EGFR mutations preceded the occurrence of other driver genes, including TP53 and RBM10. Tumors from Asian never smokers showed a short clonal evolution and presented with heterogeneous repetitive patterns for the inferred mutational order. Importantly, we found that the mutational signature ID2 is a marker of a previously unrecognized mechanism for LUAD evolution. Tumors with ID2 showed short latency and high L1 retrotransposon activity linked to L1 promoter demethylation. These tumors exhibited an aggressive phenotype, characterized by increased genomic instability, elevated hypoxia scores, low burden of neoantigens, propensity to develop metastasis, and poor overall survival. Re-activated L1 retrotransposition-induced mutagenesis can contribute to the origin of the mutational signature ID2, including through the regulation of the transcriptional factor ZNF695 , a member of the KZFP family. The complex nature of LUAD evolution creates both challenges and opportunities for screening and treatment plans.

Background Data on the safety profiles and clinical outcomes of patients with solid tumors and cardiac metastasis treated with immune checkpoint inhibitors (ICIs) are limited. Methods This is an international multicenter retrospective study of patients with cancer and cardiac metastasis at baseline. Patients who had received ≥1 dose of ICI were included. Treatment-related adverse events (trAEs) were graded per Common Terminology Criteria for Adverse Event V.5.0. Objective response rates (ORR) were evaluated by Response Evaluation Criteria in Solid Tumors V.1.1 when available. Overall survival (OS) and progression-free survival (PFS) were estimated by the Kaplan-Meier method. Results Among 110 pts, median age at ICI initiation was 65 (IQR: 59–75). Median follow-up time since ICI initiation was 36 (95% CI: 26 to 51) months. Melanoma (38%, n=42) and non-small cell lung cancer (24%, n=26) were the most common. 68 (62%) patients received ICIs as first-line, and 29 (26%) patients were treated with combination anti-programmed death-1 and anti-cytotoxic T-lymphocyte antigen 4. The most common location of cardiac metastasis was in the atria (37%, n=41) and ventricles (35%, n=39). 15 patients (13.6%) had bilateral cardiac/pericardial metastasis, 44 (40%) had left-sided, and 43 (39.8%) had right-sided. At ICI initiation, 21% (n=23) had a cardiac thrombus. Cardiology referrals and cardiac MRIs at the time of cancer diagnosis were completed on 58 (53%) and 52 (47%) patients, respectively. Cardiac events occurred in 40 (36%) patients, including arrhythmias (n=14, 13%), arterial/venous emboli (n=4, 3.6%), and cardiac tamponade (n=3, 2.7%). 53 (47%) patients developed trAEs; most common were colitis/diarrhea (n=16, 15%), dermatitis (n=13, 12%), and hepatitis (n=9, 8.2%). ICI-related major cardiac trAEs occurred in 2 (1.8%) patients. 22 patients (20%) developed grade ≥3 trAE. Patients with multiple cardiac metastases had significantly lower responses to ICI-based regimens compared with patients with single cardiac metastasis (11% vs 63%, p=0.02). For melanoma, ORR, median PFS, and median OS were 38%, 9.0 months, and 28.9 months, respectively. 83% of patients with melanoma had concordant responses in overall disease burden and cardiac disease. 91 patients discontinued ICIs, and the main reason was progression or death in 55 (49%) patients. Conclusions Among patients with pre-existing cardiac metastasis, ICIs demonstrated meaningful clinical efficacy with no increase in safety signals. Most patients had concordant responses in the overall disease burden and cardiac mass. Multidisciplinary teams are crucial for the appropriate management of patients with cardiac metastasis.

Abstract Advances in genomic medicine have accelerated the identification of mutations in disease- associated genes, but the pathogenicity of many mutations remains unknown, hindering their use in diagnostics and clinical decision-making. Predictive AI models have been generated to combat this issue, but current tools display low accuracy when tested against functionally validated datasets. We show that integrating detailed conformational data extracted from molecular dynamics simulations (MDS) into advanced AI-based models can increase their predictive power. We carried out an exhaustive mutational analysis of the disease gene PMM2 and subjected structural models of each variant to MDS. AI models trained on this dataset outperformed existing tools when predicting the known pathogenicity of mutations. Our best performing model, a neuronal networks model, was also able to predict the pathogenicity of several PMM2 mutations currently considered of unknown significance. We believe this new model will help alleviate the burden of unknown variants in genomic medicine.

Objective The purpose of this review was to examine new evidence since the authors' 2019 guidelines for cervical cancer (CC) screening in non-HIV immunocompromised persons and to provide updated recommendations based on literature review and expert opinion. In addition, human papillomavirus (HPV) vaccine efficacy in these populations was reviewed. Methods A literature search was performed similar to the authors' previous publication but was conducted through March 2023. Risk of CC, squamous intraepithelial lesions, and HPV infection in those living with solid organ transplant (SOT), end-stage renal disease (ESRD), hematopoietic stem cell transplant (HSCT), and autoimmune diseases (AID), specifically systemic lupus erythematosus (SLE), rheumatoid arthritis (RA), and inflammatory bowel disease (IBD) with addition of multiple sclerosis (MS) were researched. This update also summarizes data available on newer disease-modifying therapies (DMTs) including monoclonal antibodies (MABs). The authors then made recommendations for HPV vaccine administration, and screening using either general population guidelines or increased surveillance, the latter based on following current recommendations for women living with HIV. Additionally, the literature search included antibody response to HPV vaccines and recommendations for their administration for these same conditions. Results Based on the reviewed risks, evidence continued to support those persons living with SOT, ESRD, HSCT, and SLE, whether on immunosuppressant therapy or not, had an increased risk of HPV, squamous intraepithelial lesions, and CC whereas there was weak evidence that those persons with IBD, RA, and MS not on immunosuppressants were at risk. Data on persons using DMT/MAB were conflicting. Data showed that patients on certain immunosuppressants had lower antibody titers following HPV vaccination. There were no studies on HPV vaccine efficacy. Conclusions Following US Center for Disease Control and Prevention HIV Cervical cancer screening (CCS) guidelines is recommended for the following: SOT, ESRD, HSCT, and SLE whether on immunosuppressants or not, and IBD, RA, and MS on immunosuppressants. Shared decision-making about increased surveillance for IBD and RA not on immunosuppressants and persons on any DMT or MAB is reasonable based on conflicting data. Human papillomavirus vaccination should not change the recommendations for increased CC surveillance. A 3-dose series of the HPV vaccine is recommended for all age-eligible patients starting at 9 years of age, with catch-up to 26 years of age. Vaccination from age 27 up to age 45 years per Advisory Committee on Immunization Practices guidelines should be considered in shared decision-making. When possible, HPV vaccine series should be initiated and completed before SOT or initiation of DMT/MAB. For HSCT, the vaccine series should be readministered along with other childhood vaccines.

Overview: Despite advances in therapies targeting the tumor-intrinsic aspects of the disease, multiple myeloma (MM) remains functionally incurable. Given that new alternatives such as T cell redirected therapy and monoclonal antibodies engage ADCC and CDC by leveraging other elements of the immune system, we believe that deeper studies of the tumor microenvironment are warranted. In particular, we believe that certain macrophages are associated with tumor progression, serve as markers of future relapses, are immunosuppressive, and reduce the effectiveness of otherwise successful therapies. Methods: We performed 5' scRNAseq analysis of 189,025 cells collected from spleen or bone marrow of 4 wild type, 14 de novo, and 40 tumor bearing Vk*MYC mice treated with vehicle or effective anti-MM therapies. Discoveries were cross-referenced against a set of 45,626 human bone marrow cells collected from 35 samples at different stages of disease and treatment. We experimentally recreated in vitro the cross-talk between MM cells and macrophages by co-culturing bone marrow derived macrophages (BMDM) with MM cells or their conditioned medium, and correlated changes in gene expression as well as the ability of polarized BMDM to inhibit CAR T mediated killing of MM cells in vitro. Results: Gene expression analysis of murine in vivo C1q macrophages and in vitro polarized BMDM revealed a common signature identified in lipid-associated macrophages and Kupffer cell-like macrophages1 (high expression of Fabp5, ApoE, Cd63, C1qa/b/c, Cd163, Cd5l, Vcam1, Fcgr4, Folr2, Maf) which is associated with immunosuppression and disease progression. Ligand-receptor analysis via LIANA identified C1qb ligand in macrophages with C1qbp in tumor among the top interactions in both human and murine single cell analyses. C1qbp is a crucial element of cell adhesion and metastasis,2 and this link between tumor and macrophage can severely limit effective therapy: BMDM following stimulation/polarization with MM lines, but not naïve/unstimulated BMDM, strongly inhibit anti-BCMA CAR T in vitro cytotoxic activity. In total, a complement-related connection between tumor and macrophage is capable of directing an immunosuppressive, chemokine response that imparts resistance to therapy. While effective therapies reduce tumor and C1q expressing macrophage populations,3 retention of C1q expressing cells may be associated with future relapses. Presence of a specific subset of C1Q expressing cells, even in very low numbers, in human samples following ASCT was associated with early relapse (6 of 8 good responding samples had zero C1Q+ cells while 12 of 16 poor responding samples had 1 or more C1Q+ cells-Fisher test p-value < 0.05). In addition to high expression of C1QA/B/C, these cells are also highly upregulated in TYROBP (known to relate to macrophage polarization4 and found in a spatial transcriptomic analysis of cells at the periphery of MM and its environment5) as well as FCER1G (known to relate to macrophage infiltration6). Conclusion: As advanced therapies manipulate elements of the immune microenvironment to impart effective treatment, the connection between tumor and macrophage should not be overlooked since macrophages likely help create an immunosuppressive niche that assists in disease growth and eventual revival. 1. Ma, R.-Y., Black, A. & Qian, B.-Z. Macrophage diversity in cancer revisited in the era of single-cell omics. Trends Immunol. 43, 546-563 (2022). 2. Wang, Y. et al. C1QBP suppresses cell adhesion and metastasis of renal carcinoma cells. Sci. Rep. 7, 999 (2017). 3. Stein, C. K., Meermeier, E., Welsh, S. J., Chesi, M. & Bergsagel, P. L. Key Subsets of Immune Cells in Bone Marrow Myeloid Compartment Indicate Degree of Tumor Infiltration and Avenues for Successful Immunotherapy in Multiple Myeloma. Blood 140, 7082-7083 (2022). 4. Liang, T. et al. TYROBP, TLR4 and ITGAM regulated macrophages polarization and immune checkpoints expression in osteosarcoma. Sci. Rep. 11, 19315 (2021). 5. Sudupe, L. et al. Spatial Transcriptomics Unveils Novel Potential Mechanisms of Disease in a MI cγ1 Multiple Myeloma in vivo Model. Blood 142, 4076 (2023). 6. Dong, K. et al. FCER1G positively relates to macrophage infiltration in clear cell renal cell carcinoma and contributes to unfavorable prognosis by regulating tumor immunity. BMC Cancer 22, 140 (2022).

Introduction/Background: Bispecific T cell engagers (TCE) targeting BCMA and CD3 induce deep hematologic responses in approximately 60% of heavily pre-treated multiple myeloma (MM) patients. There is an unmet need to overcome primary resistance, as this off-the-shelf therapy is readily available to patients with aggressive disease relapse and has the potential to be delivered in the community. We and others found that high tumor burden leads to primary resistance to TCE 1,2,3,4 and that combination with immunomodulatory drugs (IMiDs) transiently improves responses yet exacerbates T cell exhaustion2. Here, we present preclinical strategies to overcome primary resistance which are tolerable and provide more durable responses specifically for the high tumor burden setting. Methods: We evaluated response and survival to a murine surrogate BCMA/CD3 TCE in the Vk*MYC immunocompetent mouse model of MM expressing human CRBN to investigate tumor burden as a mechanism underpinning primary resistance. We evaluated dosing methods and combination strategies with IMiDs or novel CELMoDs, checkpoint inhibitors, and dexamethasone to improve response rates while maintaining a manageable safety profile. Results: We investigated primary resistance in an expanded panel of Vk*MYC models reflecting differing genomic heterogeneity and confirmed that a threshold of tumor burden limits T cell activation and correlates with resistance to TCE. BCMA is cleaved from the tumor cell surface by gamma-secretase and thus, high density of shed BCMA may act as a sponge to BCMA TCE. However, we found that administration of gamma-secretase inhibitors, while stabilizing BCMA expression on MM cells, is not sufficient to overcome high tumor burden-driven resistance to TCE. We previously reported the combinatorial activity of BCMA TCE with IMiDs and revealed a role for tumor-extrinsic effects of IMiDs in allowing mice with a high tumor burden to transiently respond to BCMA-TCE before T cell exhaustion prevailed2. To build on that combination strategy, we first hypothesized that the addition of a PD1 checkpoint inhibitor could reduce T cell exhaustion that occurs in response the BCMA-TCE in the resistant setting. We found that this triple combination provides more persistent activation and expansion of cytolytic T cells and sustains remission but leads to toxic cytokine release syndrome and early mortality in half of the cohort. Next, to address the acute toxicity from the hyperactivated T cell response and reduce tumor burden, we combined the triple combination with dexamethasone (Dex). To our surprise, concurrent Dex, even in the absence of IMiDs/CELMoDs, boosts responses to TCE. We observe that Dex moderates T cell proliferation in response to the TCE and leads to a moderate sustained cytokine production (IFN-γ, TNF, and IL-2R) systemically and in the bone marrow compared with a high transient burst seen with TCE alone or the concurrent treatment with IMiD + PD1 blockade. We determined that incremental step-up TCE dosing allows the combination of IMiDs or CELMoDs (iberdomide or mezigdomide) with Dex to be completely tolerated. To investigate whether delivering IMiD or CELMoDs before or during TCE administration altered efficacy, we tested pre-treatment with IMiDs/CELMoDs + Dex compared with concurrent dosing and found pre-treatment led to superior durable responses. Pre-treatment with iberdomide + Dex followed by step-up dosed TCE generated 100% response rate and the highest overall survival in subjects bearing a high tumor burden. This was accompanied by a more favorable T cell profiling over time, with limited expansion of regulatory T cells and reduced accumulation of exhausted T cells. Conclusion: Modelling the dosing and combination strategies of a BCMA-TCE in our immunocompetent system has allowed us to understand the dynamic changes in T cell fitness that are required for effective, tolerable, and durable TCE therapy for MM. We illustrate how improvements to TCE therapy mitigate T cell exhaustion and overcome primary resistance, and importantly, suggest a strong immunotherapeutic strategy for MM patients with challenging-to-treat actively progressing disease. 1. Lee et al., Nat Med 29, 2295-2306 (2023) 2. Meermeier et al. Blood Cancer Discov. 2021 Jul;2(4):354-369. 3. Rees et al. Blood Cancer J. 2024 Jul 23;14(1):122. 4. Girgis et al. Blood Adv. 2023 Feb 28;7(4):644-648

Primary resistance to BCMA-directed bispecific antibodies (BCMA-BsAb) is a major clinical hurdle despite their outstanding efficacy for relapsed and refractory multiple myeloma (MM). Primary resistance has been linked clinically to patient characteristics including tumor burden. Our previous work in the immunocompetent Vk*MYC model of MM credentialed that tumor burden also correlates with resistance to a murine BCMA-BsAb, which we addressed through drug combinations with MM backbone agents. Pairing the BsAb with cyclophosphamide (Cy) was well-tolerated, reversed primary resistance, reshaped an immunosuppressive tumor microenvironment (TME) and led to durable responses with immunosurveillance in all but the most aggressive settings. Here, we aimed to improve the BCMA-BsAb and Cy combination strategy with a goal of curing models representing clinically relevant Cy-refractory aggressive settings, by adding T cell checkpoint blockade. Despite a lack of single agent activity of checkpoint inhibitors in MM (and in our models), PD1 and TIGIT are relevant targets as their expression on T cells correlates with both primary and acquired resistance to BCMA-directed cell therapies. Our team hypothesized that blockade of either PD1 or TIGIT with concurrent BCMA-BsAb and Cy would deepen anti-MM responses and provide a more durable immunotherapy regimen by sustaining activation of the T cell repertoire. Methods: We preclinically tested the ability of two weeks of concurrent dosing of BCMA-BsAb with Cy, checkpoint inhibitors targeting either PD1 or TIGIT, or the triple combination to overcome primary resistance and improve survival in a Cy-resistant transplantable Vk*MYC model of MM. We followed the response longitudinally in the blood, and in the bone marrow and spleen after complete responses were achieved at five weeks. Results: The double combination of a checkpoint inhibitor to the BCMA-BsAb was well-tolerated and abolished primary resistance, yet, failed to provide curative responses. Whereas the triple combination with either PD1 or TIGIT blockade remained safe, provided robust initial responses that overcame primary resistance and resulted in durable complete and curative responses in the entire cohort. These survival benefits represent significant improvements over control combinations tested here but also over all historical preclinical anti-MM therapy tested in our models to date. Both PD1 and TIGIT blockade with Cy/BCMA-BsAb triple combinations delivered a similar multiphasic potent anti-tumor response. This response was first characterized by highly effective T cell-mediated lysis of the tumor, as evidenced by deep reduction of M-spike after two weeks of treatment. As we previously published, the addition of Cy to BCMA-BsAb rapidly reshapes the TME by depleting Tregs and exhausted T cells and brings naive T cells to the tumor. However, we observed elevated T cell checkpoint expression at times of BsAb-relapse in aggressive models, suggesting that blockade of these pathways may help sustain T cell activation. Indeed, the ensuing T cell response in the triple combination gradually builds and encourages a pool of less terminally differentiated T cells to proliferate to allow for a more sustained response with repeat dosing. For the first time, we observe that the triple combination significantly engages the CD4 T cell compartment, which can be essential for a complete anti-tumor response. At the time of complete response, single cell analysis displays that T cells retained in the BM were less exhausted and defined by elevated CCR2 expression, a known marker of activated memory T cells, suggestive of ongoing immunosurveillance. Conclusions: Here we demonstrated through controlled in vivo experimentation how the addition of Cy reverts primary resistance to BCMA-BsAb by reshaping the TME in our Cy-insensitive preclinical model. Adding checkpoint inhibitors targeting TIGIT or PD1 further improves the durability of BsAb and Cy combination to cure all mice in these cohorts, by critically lysing the tumor, resetting the suppressive TME, and instigating a gradual, multiphasic, and sustained anti-MM T cell response. The concurrently delivered triple combination is well tolerated and provides optimal temporal control of MM especially in a preclinical model reflecting primary resistance mediated by high tumor burden and may have translational benefit to MM patients.

Introduction: Traditional home-call, or the practice of holding a pager at home overnight to manage questions regarding patient care and direct patient calls, is a common component of hematology fellowship. Depending on the institution and training program, the frequency and expectations of home-call may vary. Home-call in fellowship is often performed overnight between two days of work without a “post-call” day to recover. As a field, medicine has entered the digital era, accompanied by changes in patient interactions and expectations involving after-hours calls. Little is known about modern non-digital interactions with patients such as after-hours calls in hematology practices and their effects on trainees. This project aims to evaluate the home-call pager burden and subjective experience in fellows. Methods: We analyzed Hematology Pager (HP) data from 7/1/19 - 4/14/23. The HPs for Mayo Clinic Rochester are covered by hematology fellows, including the weekend and after hours (6PM - 7AM) pagers. Those of interest were the Consults Pager (CP; covers new inpatient consults if discussion initiated outside of electronic order) and the Outpatient Pager (OP; covers direct patient calls as well as critical result communications for weekends and after-hours). The frequency of home-call varies based on each rotation but can require home-call up to 3-4 times per week with the expectation to occasionally present to the hospital overnight in the setting of a hematologic emergency. An optional survey was distributed to the fellowship in May 2024 with the intent to support trainee wellness and assess perceptions and attitudes toward the home-call experience. We allowed for free-text responses and used a 5-point Likert scale for structured responses. Results: The CP received a total of 5,304 pages during the analyzed period for a mean of 3.8 pages per day. Of those, 975 pages (18%) occurred after-hours and 1,250 (24%) during weekends. The OP received a total of 3,964 pages during the analyzed period, definitionally during weekends and/or after-hours, for a mean of 2.9 pages per day. The OP had the highest relative activity on weekends, which ranged from 1-18 calls per day. The survey captured 19/33 (58%) hematology/oncology fellows, which were comprised of 58% males and 42% females representing all levels of training with 42% PGY4s, 26% PGY5s, and 32% PGY6s. Over 85% felt that holding the HP was not an educational experience and that they did not learn about hematology while managing it. Moreover, 85% of respondents felt that they did not help patients get time-sensitive care when holding the HP. Only 5% felt that the majority of care provided through the HP required a Medical Degree and 32% agreed that the majority of calls were due to an acute clinical status change warranting immediate medical attention. If immediate medical attention was possibly required, 95% of fellows reported a recommendation of evaluation in the nearest emergency room. Over 85% of fellows felt that the HP affected other individuals (e.g., significant other) in their households. No respondents (0%) agreed that they could maintain their exercise schedule while holding the HP and only 16% reported no effect on their social life. Nearly all fellows reported not feeling well rested after a home call shift, regardless of whether the level of pager activity was low (≤2 calls), average (3-5 calls), or high (≥6 calls). Up to 95% of fellows reported feeling anxiety when holding the pagers. The free responses outlined concerns about sleep deprivation from call multiple times per week, the impact of home-call on learning, and the desire for a process that triaged patient calls at night that did not require physician resource utilization. Conclusions: Home-call is a long-standing tradition that gives hospital teams and patients access to specialty care after standard business hours. However, home-call can impact wellness, contribute to fatigue, and affect learning. To our knowledge, this is the first analysis evaluating call pager volumes and hematology fellows' perceptions and attitudes toward the home-call experience. Hematology is a dynamic field that requires empathy, critical thinking, and physician wellness to provide the best possible care to patients. In the digital era, the current structure of this long-standing tradition may warrant reevaluation and optimization to prioritize a system beneficial for both patient care and physician wellness.