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Yarach, Uten

https://orcid.org/0000-0002-5923-2864

Mayo Clinic

Chiang Mai University

Citations 5

Minimizing susceptibility-induced BOLD sensitivity loss in multi-band accelerated fMRI using point spread function mapping and gradient reversal
In, Myung‐Ho , Yarach, Uten , Meyer, Nolan , Trzasko, Joshua D. , Shu, Yunhong , Meyer, Nolan K , Shu, Yunhong , In, Myung-Ho , Kang, Daehun , Jo, Hang Joon , Huston, John , Bernstein, Matt A.

Physics in Medicine & Biology | December 22, 2022 | Volume: 68 | Issue: 2 | Pages: 025012

10.1088/1361-6560/acae14 Get It

Abstract Objective . Interleaved reverse-gradient fMRI (RG-fMRI) with a point-spread-function (PSF) mapping-based distortion correction scheme has the potential to minimize signal loss in echo-planar-imaging (EPI). In this work, the RG-fMRI is further improved by imaging protocol optimization and application of reverse Fourier acquisition. Approach . Multi-band imaging was adapted for RG-fMRI to improve the temporal and spatial resolution. To better understand signal dropouts in forward and reverse EPIs, a simple theoretical relationship between echo shift and geometric distortion was derived and validated by the reliable measurements using PSF mapping method. After examining practical imaging protocols for RG-fMRI in three subjects on both a conventional whole-body and a high-performance compact 3 T, the results were compared and the feasibility to further improve the RG-fMRI scheme were explored. High-resolution breath-holding RG-fMRI was conducted with nine subjects on the compact 3 T and the fMRI reliability improvement in high susceptibility brain regions was demonstrated. Finally, reverse Fourier acquisition was applied to RG-fMRI, and its benefit was assessed by a simulation study based on the breath-holding RG-fMRI data. Main results . The temporal and spatial resolution of the multi-band RG-fMRI became feasible for whole-brain fMRI. Echo shift measurements from PSF mapping well estimated signal dropout effects in the EPI pair and were useful to further improve the RG-fMRI scheme. Breath-holding RG-fMRI demonstrated improved fMRI reliability in high susceptibility brain regions. Reverse partial Fourier acquisition omitting the late echoes could further improve the temporal or spatial resolution for RG-fMRI without noticeable signal degradation and spatial resolution loss. Significance . With the improved imaging scheme, RG-fMRI could reliably investigate the functional mechanisms of the human brain in the temporal and frontal areas suffering from susceptibility-induced functional sensitivity loss.
The effect of spiral trajectory correction on pseudo‐continuous arterial spin labeling with high‐performance gradients on a compact 3T scanner
Kang, Daehun , Yarach, Uten , In, Myung‐Ho , Gray, Erin M. , Trzasko, Joshua D. , Shu, Yunhong , Bernstein, Matt A. , Bernstein, Matt A , Kang, Daehun , In, Myung-Ho , Jo, Hang Joon , Huston, John

Magnetic Resonance in Medicine | December 4, 2019 | Volume: 84 | Issue: 1 | Pages: 192-205

10.1002/mrm.28110 Get It

PurposeTo demonstrate the feasibility of pseudo‐continuous arterial‐spin–labeled (pCASL) imaging with 3D fast‐spin‐echo stack‐of‐spirals on a compact 3T scanner (C3T), to perform trajectory correction for eddy‐current–induced deviations in the spiral readout of pCASL imaging, and to assess the correction effect on perfusion‐related images with high‐performance gradients (80 mT/m, 700T/m/s) of the C3T.MethodsTo track eddy‐current–induced artifacts with Archimedean spiral readout, the spiral readout in pCASL imaging was performed with 5 different peak gradient slew rate (Smax) values ranging from 70 to 500 T/m/s. The trajectory for each Smax was measured using a dynamic field camera and applied in a density‐compensated gridding image reconstruction in addition to the nominal trajectory. The effect of the trajectory correction was assessed with perfusion‐weighted (ΔM) images and proton‐density–weighted images as well as cerebral blood flow (CBF) maps, obtained from 10 healthy volunteers.ResultsBlurring artifact on ΔM images was mitigated by the trajectory correction. CBF values on the left and right calcarine cortices showed no significant difference after correction. Also, the signal‐to‐noise ratio of ΔM images improved, on average, by 7.6% after correction (P < .001). The greatest improvement of 12.1% on ΔM images was achieved with a spiral readout using Smax of 300~400 T/m/s.ConclusionEddy currents can cause spiral trajectory deviation, which leads to deformation of the CBF map even in cases of low value Smax. The trajectory correction for spiral‐readout–based pCASL produces more reliable results for perfusion imaging. These results suggest that pCASL is feasible on C3T with high‐performance gradients.
Distortion‐free imaging: A double encoding method (DIADEM) combined with multiband imaging for rapid distortion‐free high‐resolution diffusion imaging on a compact 3T with high‐performance gradients
In, Myung‐Ho , Tan, Ek T. , Trzasko, Joshua D. , Shu, Yunhong , Yarach, Uten , Tao, Shengzhen , Gray, Erin M. , Tao, Shengzhen , Tan, Ek T , Kang, Daehun , Huston, John , Bernstein, Matt A. , In, Myung-Ho

Journal of Magnetic Resonance Imaging | May 21, 2019 | Volume: 51 | Issue: 1 | Pages: 296-310

10.1002/jmri.26792 Get It

BackgroundDistortion‐free, high‐resolution diffusion imaging using DIADEM (Distortion‐free Imaging: A Double Encoding Method), proposed recently, has great potential for clinical applications. However, it can suffer from prolonged scan times and its reliability for quantitative diffusion imaging has not been evaluated.PurposeTo investigate the clinical feasibility of DIADEM‐based high‐resolution diffusion imaging on a novel compact 3T (C3T) by evaluating the reliability of quantitative diffusion measurements and utilizing both the high‐performance gradients (80 mT/m, 700 T/m/s) and the sequence optimization with the navigator acquisition window reduction and simultaneous multislice (multiband) imaging.Study TypeProspective feasibility study.Phantom/SubjectsDiffusion quality control phantom scans to evaluate the reliability of quantitative diffusion measurements; 36 normal control scans for B0‐field mapping; six healthy and two patient subject scans with a brain tumor for comparisons of diffusion and anatomical imaging.Field Strength/Sequence3T; the standard single‐shot echo‐planar‐imaging (EPI), multishot DIADEM diffusion, and anatomical (2D‐FSE [fast‐spin‐echo], 2D‐FLAIR [fluid‐attenuated‐inversion‐recovery], and 3D‐MPRAGE [magnetization prepared rapid acquisition gradient echo]) imaging.AssessmentThe scan time reduction, the reliability of quantitative diffusion measurements, and the clinical efficacy for high‐resolution diffusion imaging in healthy control and brain tumor volunteers.Statistical TestBland–Altman analysis.ResultsThe scan time for high in‐plane (0.86 mm2) resolution, distortion‐free, and whole brain diffusion imaging were reduced from 10 to 5 minutes with the sequence optimizations. All of the mean apparent diffusion coefficient (ADC) values in phantom were within the 95% confidence interval in the Bland–Altman plot. The proposed acquisition with a total off‐resonance coverage of 597.2 Hz wider than the expected bandwidth of 500 Hz in human brain could yield a distortion‐free image without foldover artifacts. Compared with EPI, therefore, this approach allowed direct image matching with the anatomical images and enabled improved delineation of the tumor boundaries.Data ConclusionThe proposed high‐resolution diffusion imaging approach is clinically feasible on C3T due to a combination of hardware and sequence improvements.Level of Evidence3Technical EfficacyStage 1 J. Magn. Reson. Imaging 2020;51:296–310.
Dynamic 2D self‐phase‐map Nyquist ghost correction for simultaneous multi‐slice echo planar imaging
Yarach, Uten , Tung, Yi‐Hang , Setsompop, Kawin , In, Myung‐Ho , Chatnuntawech, Itthi , Yakupov, Renat , Godenschweger, Frank, Speck, Oliver , In, Myung-Ho

Magnetic Resonance in Medicine | February 10, 2018 | Volume: 80 | Issue: 4 | Pages: 1577-1587

10.1002/mrm.27123 Get It

PurposeTo develop a reconstruction pipeline that intrinsically accounts for both simultaneous multislice echo planar imaging (SMS‐EPI) reconstruction and dynamic slice‐specific Nyquist ghosting correction in time‐series data.MethodsAfter 1D slice‐group average phase correction, the separate polarity (i.e., even and odd echoes) SMS‐EPI data were unaliased by slice GeneRalized Autocalibrating Partial Parallel Acquisition. Both the slice‐unaliased even and odd echoes were jointly reconstructed using a model‐based framework, extended for SMS‐EPI reconstruction that estimates a 2D self‐phase map, corrects dynamic slice‐specific phase errors, and combines data from all coils and echoes to obtain the final images.ResultsThe percentage ghost‐to‐signal ratios (%GSRs) and its temporal variations for MB3Ry2 with a field of view/4 shift in a human brain obtained by the proposed dynamic 2D and standard 1D phase corrections were 1.37 ± 0.11 and 2.66 ± 0.16, respectively. Even with a large regularization parameter λ applied in the proposed reconstruction, the smoothing effect in fMRI activation maps was comparable to a very small Gaussian kernel size 1 × 1 × 1 mm3.ConclusionThe proposed reconstruction pipeline reduced slice‐specific phase errors in SMS‐EPI, resulting in reduction of GSR. It is applicable for functional MRI studies because the smoothing effect caused by the regularization parameter selection can be minimal in a blood‐oxygen‐level–dependent activation map.
Model‐based iterative reconstruction for single‐shot EPI at 7 T
Yarach, Uten , In, Myung‐Ho , Chatnuntawech, Itthi , Bilgiç, Berkin , Godenschweger, Frank, Mattern, Hendrik , Sciarra, Alessandro , Speck, Oliver , Bilgic, Berkin , In, Myung-Ho

Magnetic Resonance in Medicine | February 10, 2017 | Volume: 78 | Issue: 6 | Pages: 2250-2264

10.1002/mrm.26633 Get It

Purpose To describe a model‐based reconstruction strategy for single‐shot echo planar imaging (EPI) that intrinsically accounts for k‐space nonuniformity, Nyquist ghosting, and geometric distortions during rather than before or after image reconstruction. Methods Ramp sampling and inhomogeneous B0 field‐induced distortion cause the EPI samples to lie on a non‐Cartesian grid, thus requiring the nonuniform fast Fourier transform. Additionally, a 2D Nyquist ghost phase correction without the need for extra navigator acquisition is included in the proposed reconstruction. Coil compression is also incorporated to reduce the computational load. The proposed method is applied to phantom and human brain MRI data. Results The results demonstrate that Nyquist ghosting and geometric distortions are reduced by the proposed reconstruction. The proposed 2D phase correction is superior to a conventional 1D correction. The reductions of both artifacts lead to improved temporal signal‐to‐noise ratio (tSNR). The virtual coil results suggest that the processing time can be reduced by up to 75%, with a mean tSNR loss of only 3.2% when using 8‐virtual instead of 32‐physical coils for twofold undersampled data. Conclusion The proposed reconstruction improves the quality (ghosting, geometry, and tSNR) of EPI without requiring calibration data for Nyquist ghost correction. Magn Reson Med 78:2250–2264, 2017. © 2017 International Society for Magnetic Resonance in Medicine.