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539 citation(s) found for "Ma, Feng".

Synapses are regulated by the cytoplasmic tyrosine kinase Fer in a pathway mediated by p120catenin, Fer, SHP-2, and β-catenin
Lee, Seung-Hye, Peng, I‐Feng , Ng, Yu Gie, Yanagisawa, Masahiro, Elia, Lisa P. , Balsamo, Janne, Lilien, Jack, Anastasiadis, Panos Z. , Ullian, Erik M. , Reichardt, Louis F. , Ng, Yu‐Gie, Bamji, Shernaz X.

The Journal of Cell Biology | December 1, 2008 | Volume: 183 | Issue: 5 | Pages: 893-908

10.1083/jcb.200807188 | PMID 19047464 Get It

Localization of presynaptic components to synaptic sites is critical for hippocampal synapse formation. Cell adhesion–regulated signaling is important for synaptic development and function, but little is known about differentiation of the presynaptic compartment. In this study, we describe a pathway that promotes presynaptic development involving p120catenin (p120ctn), the cytoplasmic tyrosine kinase Fer, the protein phosphatase SHP-2, and β-catenin. Presynaptic Fer depletion prevents localization of active zone constituents and synaptic vesicles and inhibits excitatory synapse formation and synaptic transmission. Depletion of p120ctn or SHP-2 similarly disrupts synaptic vesicle localization with active SHP-2, restoring synapse formation in the absence of Fer. Fer or SHP-2 depletion results in elevated tyrosine phosphorylation of β-catenin. β-Catenin overexpression restores normal synaptic vesicle localization in the absence of Fer or SHP-2. Our results indicate that a presynaptic signaling pathway through p120ctn, Fer, SHP-2, and β-catenin promotes excitatory synapse development and function.
International Lung Cancer Consortium: Pooled Analysis of Sequence Variants in DNA Repair and Cell Cycle Pathways
Hung, Rayjean J., Risch, Angela , Popanda, Odilia , Haugen, Aage, Zienolddiny, Shanbeh , Benhamou, Simone , Bouchardy, Christine , Lan, Qing , Spitz, Margaret R., Wichmann, H. E., Vineis, Paolo , Matullo, Giuseppe , Kiyohara, Chikako , Zhang, Zuo‐Feng , Pezeshki, Benhnaz, Harris, Curtis C. , Mechanic, Leah E. , Seow, Adeline , Ng, Daniel , Szeszenia‐Dąbrowska, Neonila, Заридзе, Давид , Lissowska, Jolanta , Rudnai, Péter, Fabiánová, Eleonóra , Mateș, Dana , Foretová, Lenka , Janout, Vladimí­r , Bencko, Vladimír , Caporaso, Neil E. , Chen, Chu , Duell, Eric J. , Goodman, Gary E. , Field, John K. , Houlston, Richard S. , Landi, Maria Teresa , McLaughlin, John, Schwartz, Ann G. , Stücker, Isabelle, Tajima, Kazuo, Matsuo, Keitaro , Thun, Michael J., Andrew, Angeline S. , Monnier, Stéphanie, Brennan, Paul , Hung, Rayjean J. , Hung, Rayjean J., Christiani, David C. , Marchand, Loı̈c Le , Hong, Yun‐Chul , Lazarus, Philip J. , Muscat, Joshua E. , McLaughlin, John, Shen, Hongbing , Yang, Ping , Wiencke, John K. , Boffetta, Paolo , Houlston, Richard S , Lissowska, Jolanta , Duell, Eric J , Hung, Rayjean J , Field, John K , Matsuo, Keitaro , Mates, Dana , Matullo, Giuseppe , Risch, Angela , Zienolddiny, Shanbeh

Cancer Epidemiology, Biomarkers & Prevention | November 6, 2008 | Volume: 17 | Issue: 11 | Pages: 3081-3089

10.1158/1055-9965.epi-08-0411 | PMID 18990748 Get It

Abstract Background: The International Lung Cancer Consortium was established in 2004. To clarify the role of DNA repair genes in lung cancer susceptibility, we conducted a pooled analysis of genetic variants in DNA repair pathways, whose associations have been investigated by at least 3 individual studies. Methods: Data from 14 studies were pooled for 18 sequence variants in 12 DNA repair genes, including APEX1, OGG1, XRCC1, XRCC2, XRCC3, ERCC1, XPD, XPF, XPG, XPA, MGMT, and TP53. The total number of subjects included in the analysis for each variant ranged from 2,073 to 13,955 subjects. Results: Four of the variants were found to be weakly associated with lung cancer risk with borderline significance: these were XRCC3 T241M [heterozygote odds ratio (OR), 0.89; 95% confidence interval (95% CI), 0.79-0.99 and homozygote OR, 0.84; 95% CI, 0.71-1.00] based on 3,467 cases and 5,021 controls from 8 studies, XPD K751Q (heterozygote OR, 0.99; 95% CI, 0.89-1.10 and homozygote OR, 1.19; 95% CI, 1.02-1.39) based on 6,463 cases and 6,603 controls from 9 studies, and TP53 R72P (heterozygote OR, 1.14; 95% CI, 1.00-1.29 and homozygote OR, 1.20; 95% CI, 1.02-1.42) based on 3,610 cases and 5,293 controls from 6 studies. OGG1 S326C homozygote was suggested to be associated with lung cancer risk in Caucasians (homozygote OR, 1.34; 95% CI, 1.01-1.79) based on 2,569 cases and 4,178 controls from 4 studies but not in Asians. The other 14 variants did not exhibit main effects on lung cancer risk. Discussion: In addition to data pooling, future priorities of International Lung Cancer Consortium include coordinated genotyping and multistage validation for ongoing genome-wide association studies. (Cancer Epidemiol Biomarkers Prev 2008;17(11):3081–9)
Biologic properties and enucleation of red blood cells from human embryonic stem cells
Lu, Shi-Jiang, Park, Jennifer S., Vida, Loyda N., Lee, Bao-Shiang, Strausbauch, Michael, Wettstein, Peter J., Honig, George R., Lanza, Robert , Lu, Shi‐Jiang, Feng, Qiang

Blood | August 20, 2008 | Volume: 112 | Issue: 12 | Pages: 4475-4484

10.1182/blood-2008-05-157198 | PMID 18713948 Get It

Abstract Human erythropoiesis is a complex multistep process that involves the differentiation of early erythroid progenitors to mature erythrocytes. Here we show that it is feasible to differentiate and mature human embryonic stem cells (hESCs) into functional oxygen-carrying erythrocytes on a large scale (1010-1011 cells/6-well plate hESCs). We also show for the first time that the oxygen equilibrium curves of the hESC-derived cells are comparable with normal red blood cells and respond to changes in pH and 2,3-diphosphoglyerate. Although these cells mainly expressed fetal and embryonic globins, they also possessed the capacity to express the adult β-globin chain on further maturation in vitro. Polymerase chain reaction and globin chain specific immunofluorescent analysis showed that the cells increased expression of β-globin (from 0% to > 16%) after in vitro culture. Importantly, the cells underwent multiple maturation events, including a progressive decrease in size, increase in glycophorin A expression, and chromatin and nuclear condensation. This process resulted in extrusion of the pycnotic nuclei in up to more than 60% of the cells generating red blood cells with a diameter of approximately 6 to 8 μm. The results show that it is feasible to differentiate and mature hESCs into functional oxygen-carrying erythrocytes on a large scale.
Relative value of ZAP-70, CD38, and immunoglobulin mutation status in predicting aggressive disease in chronic lymphocytic leukemia
Rassenti, Laura Z., Jain, Sonia , Keating, Michael J. , Wierda, William G. , Grever, Michael R. , Byrd, John C. , Brown, Jennifer R. , Greaves, Andrew, Rai, Kanti R., Byrd, John C. , Kay, Neil E. , Gribben, John G. , Neuberg, Donna , He, Feng , Rai, Kanti R., Kipps, Thomas J. , Byrd, John C

Blood | June 25, 2008 | Volume: 112 | Issue: 5 | Pages: 1923-1930

10.1182/blood-2007-05-092882 | PMID 18577710 Get It

AbstractLeukemia-cell expression of ZAP-70, CD38, or unmutated immunoglobulin heavy chain variable region genes (U-IGHV) each is associated with aggressive disease in patients with chronic lymphocytic leukemia (CLL). To assess the relative strength of each marker, we defined thresholds for designating a case as positive for CD38 or ZAP-70 in a test cohort of 307 patients and used these data-defined criteria to stratify patients in an independent cohort of 705 patients. Multivariable analysis revealed that ZAP-70 was the strongest risk factor. Knowledge of the IGHV mutation status or CD38 did not improve our ability to predict the time to first treatment except for ZAP-70–negative cases, which could be segregated into 2 groups of intermediate-risk or low-risk disease based on whether they expressed unmutated or mutated IGHV. ZAP-70 maintained its high relative prognostic value for the subset of patients with early-stage, asymptomatic disease, including patients evaluated within 1 year of diagnosis. Although it is premature to recommend therapy based on these risk factors, patients with ZAP-70–positive CLL cells should be monitored closely for disease progression as they have a median time from diagnosis to requiring initial therapy by standard criteria of approximately 3 years.
Structural Basis of Substrate Recognition in Thiopurine S-Methyltransferase
Peng, Yi , Wilk, Dennis, Adjei, Araba A., Salavaggione, Oreste E., Weinshilboum, Richard M. , Yee, Vivien C., Feng, QiPing , Weinshilboum, Richard M.

Biochemistry | May 17, 2008 | Volume: 47 | Issue: 23 | Pages: 6216-6225

10.1021/bi800102x | PMID 18484748 Get It

Genetic and Clinical Heterogeneity in eIF2B-Related Disorder
Maletkovic, Jelena , Gorospe, J. Rafael, Gordon, Erynn S. , Mintz, Michelle, Hoffman, Eric P. , Alper, Gülay, Singhal, Bhim , Amartino, Hernán , Brown, Candida, Chan, Alicia , Renaud, Deborah L. , Geraghty, Michael T. , Jensen, Lloyd, Şenbil, Nesrin , Kadom, Nadja , Nazarian, Javad , Feng, Yuanjian, Wang, Zuyi, Morizono, Hiroki , Vanderver, Adeline , Schiffmann, Raphael , Lynch, David R. , Harding, Cary O. , Hartka, Thomas , Nazarian, Javad

Journal of Child Neurology | February 8, 2008 | Volume: 23 | Issue: 2 | Pages: 205-215

10.1177/0883073807308705 | PMID 18263758 Get It

Eukaryotic initiation factor 2B (eIF2B)-related disorders are heritable white matter disorders with a variable clinical phenotype (including vanishing white matter disease and ovarioleukodystrophy) and an equally heterogeneous genotype. We report 9 novel mutations in the EIF2B genes in our subject population, increasing the number of known mutations to more than 120. Using homology modeling, we have analyzed the impact of novel mutations on the 5 subunits of the eIF2B protein. Although recurrent mutations have been found at CpG dinucleotides in the EIF2B genes, the high incidence of private or low frequency mutations increases the challenge of providing rapid genetic confirmation of this disorder, and limits the application of EIF2B screening in cases of undiagnosed leukodystrophy.
SYK-dependent tonic B-cell receptor signaling is a rational treatment target in diffuse large B-cell lymphoma
Monti, Stefano , Juszczyński, Przemysław , Daley, John, Chen, Wen , Kutok, Jeffery L. , Chen, Lin‐Feng , Witzig, Thomas E. , Habermann, Thomas M. , Shipp, Margaret Ann

Blood | November 15, 2007 | Volume: 111 | Issue: 4 | Pages: 2230-2237

10.1182/blood-2007-07-100115 | PMID 18006696 Get It

The role of B-cell receptor (BCR)–mediated survival signals in diffuse large B-cell lymphoma (DLBCL) remains undefined. Ligand-induced BCR signaling induces receptor oligomerization, Igα/β immunoreceptor tyrosine-based activation motif (ITAM) phosphorylation, and activation of the spleen tyrosine kinase (SYK), which initiates downstream events and amplifies the initial BCR signal. BCRs also transmit low-level tonic survival signals in the absence of receptor engagement. Herein, we assess the role of SYK-dependent tonic BCR survival signals in DLBCL cell lines and primary tumors and evaluate the efficacy of an ATP-competitive inhibitor of SYK, R406, in vitro. R406 induced apoptosis of the majority of examined DLBCL cell lines. In R406-sensitive DLBCL cell lines, R406 specifically inhibited both tonic- and ligand-induced BCR signaling (autophosphorylation of SYK525/526 and SYK-dependent phosphorylation of the B-cell linker protein [BLNK]). The majority of examined primary DLBCLs also exhibited tonic- and ligand-induced BCR signaling; in these primary tumors, BCR signaling was also inhibited by R406. Of note, BCR-dependent and R406-sensitive DLBCL cell lines were independently identified as “BCR-type” tumors by transcriptional profiling. Therefore, SYK-dependent tonic BCR signaling is an important and potentially targetable survival pathway in some, but not all, DLBCLs. In addition, R406-sensitive DLBCLs can be identified by their transcriptional profiles.
Intracardiac Thrombosis and Embolism in Patients With Cardiac Amyloidosis
Feng, DaLi, Edwards, William D. , Oh, Jae K. , Chandrasekaran, Krishnaswamy , Grogan, Martha , Martinez, Matthew W. , Syed, Imran I., Hughes, Deborah A., Lust, John A., Jaffe, Allan S. , Klarich, Kyle W. , Syed, Imran I., Jaffe, Allan S. , Gertz, Morie A.

Circulation | November 6, 2007 | Volume: 116 | Issue: 21 | Pages: 2420-2426

10.1161/circulationaha.107.697763 | PMID 17984380 Get It

Background— Patients with primary amyloidosis (AL type) have a poor prognosis, in part due to frequent cardiac involvement. Although intracardiac thrombus has been reported in anecdotal cases, neither its frequency nor its role in causing mortality is known. Furthermore, the clinical and echocardiographic variables that may be associated with thromboembolism in cardiac amyloidosis have not been defined. Methods and Results— A total of 116 autopsy or explanted cases of cardiac amyloidosis (55 AL and 61 other type) were identified in the Mayo Clinic. Forty-six fatal nonamyloid trauma cases served as controls. Each heart was examined for intracardiac thrombus. The cause of death was determined from autopsy and clinical notes. Intracardiac thrombosis was identified in 38 hearts (33%). Twenty-three had 1 thrombus, whereas 15 had 2 to 5 thrombi. Although subjects in the AL group were younger and had less atrial fibrillation than those with other types of amyloidosis, the AL group had significantly more intracardiac thrombus (51% versus 16%, P <0.001) and more fatal embolic events (26% versus 8%, P <0.03). Control hearts had no intracardiac thrombus. The presence of both atrial fibrillation and AL was associated with an extremely high risk for thromboembolism (odds ratio 55.0 [95% confidence interval 8.1 to 1131.4]). By multivariate analysis, AL type (odds ratio 8.4 [95% confidence interval 1.8 to 51.2]) and left ventricular diastolic dysfunction (odds ratio 12.2 [95% confidence interval 2.7 to 72.7]) were independently associated with thromboembolism. Conclusions— A high frequency of intracardiac thrombosis was present in cardiac amyloidosis. Furthermore, thromboembolism caused significant fatality. Several risk factors for thromboembolism were identified. Early screening, especially in high-risk patients, and early anticoagulation might reduce morbidity and mortality.
Myocardial Infarction with Normal Coronary Arteries: A Role for MRI?
Martinez, Matthew W. , Babuin, Luciano, Syed, Imran S., Feng, DaLi, Mathew, Verghese, Breen, Jerome F., Jaffe, Allan S. , Miller, Wayne L. , Jaffe, Allan S.

Clinical Chemistry | April 27, 2007 | Volume: 53 | Issue: 5 | Pages: 995-996

10.1373/clinchem.2007.086199 | PMID 17468413 Get It

Truncating Variants in p53AIP1 Disrupting DNA Damage–Induced Apoptosis Are Associated with Prostate Cancer Risk
Wang, Fengwei , Taniguchi, Ken, Seelan, Ratnam S. , Zarfas, Katherine E., McDonnell, Shannon K. , Qian, Chiping , Lu, Youyong , Shridhar, Viji , Tindall, Donald J., Beebe‐Dimmer, Jennifer , Cooney, Kathleen A. , Isaacs, William B., Jacobsen, Steven J. , Schaid, Daniel J. , Thibodeau, Stephen N. , Wang, Xianshu , Wang, Liang , Pan, Kai‐Feng , Couch, Fergus J. , Liu, Wanguo , McDonnell, Shannon K

Cancer Research | November 2, 2006 | Volume: 66 | Issue: 21 | Pages: 10302-10307

10.1158/0008-5472.can-06-0638 | PMID 17079449 Get It

Abstract Germ line mutations in several genes (BRCA1, BRCA2, and CHEK2) whose products are involved in the DNA damage–signaling pathway have been implicated in prostate cancer risk. To identify additional genes in this pathway that might confer susceptibility to this cancer, we analyzed a recently identified DNA damage–response gene, p53AIP1 (a gene encoding for p53-regulated apoptosis-inducing protein 1), for genetic variants in prostate cancer. Five novel germ line variants were identified. The two truncating variants (Ser32Stop and Arg21insG) were found in 3% (4 of 132) of unselected prostate tumor samples. Genotyping of the two variants in an additional 393 men with sporadic prostate cancer showed a frequency of 3.1% (12 of 393) in contrast to 0.6% (2 of 327) in 327 unaffected men (Fisher's exact test, P = 0.018), with an odds ratio (OR) of 5.1 [95% confidence interval (95% CI), 1.1-23.0]. In addition, two of six tumors carrying the truncating variants were associated with loss of heterozygosity of the wild-type alleles, suggesting that p53AIP1 may act as a tumor suppressor. We also showed that the truncated p53AIP1 was unable to induce apoptosis and suppress cell growth in HeLa and COS-7 cells. These results suggest that loss-of-function variants in p53AIP1 associated with the risk of sporadic prostate cancer and further support the concept that the genetic defects in the DNA damage–response genes play an important role in the development of prostate cancer. (Cancer Res 2006; 66(21): 10302-7)