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844 citation(s) found for "Yu, Roger".

Molecular and Immunohistochemical Analysis of Mucinous Cystic Neoplasm of the Liver
Treeck, Benjamin J. Van , Lotfalla, Mira , Czeczok, Thomas , Mounajjed, Taofic, Moreira, Roger K. , Allende, Daniela , Naini, Bita V. , Westerhoff, Maria , Adsay, Volkan , Kerr, Sarah E. , IIyas, Sumera I, Smoot, Rory L. , Liu, Yuanhang , Davila, Jaime , Graham, Rondell P. , Van Treeck, Benjamin J, Czeczok, Thomas W, I Ilyas, Sumera, Smoot, Rory L , Graham, Rondell P , Davila, Jaime I , Adsay, N Volkan , Reid, Michelle D.

American Journal of Clinical Pathology | June 19, 2020 | Volume: 154 | Issue: 6 | Pages: 837-847

10.1093/ajcp/aqaa115 | PMID 32880620 Get It

Abstract Objectives Mucinous cystic neoplasm of the liver is characterized by neoplastic mucinous and/or biliary epithelium surrounded by ovarian-type stroma. Immunohistochemical studies have shown that the ovarian-type stroma expresses estrogen receptor, suggesting potential hormonal responsiveness. The molecular biology of mucinous cystic neoplasm of the liver remains poorly studied. Methods Transcriptome sequencing and immunohistochemistry were performed on a series of mucinous cystic neoplasms. Results Mucinous cystic neoplasm of the liver exhibited significantly increased RNA expression of ovarian stromal markers WT1, PR, and ER2 and sex cord stromal markers SF-1, inhibin-α, and calretinin compared with nonneoplastic liver. Immunohistochemistry confirmed the RNA-level data. Evidence for sex hormone biosynthesis was identified by significant overexpression of multiple estrogen biosynthetic enzymes. Expression of 17β-hydroxysteroid dehydrogenase 1 was confirmed immunohistochemically. Pathway analysis also identified significant upregulation of the hedgehog and Wnt pathways and significant downregulation of T-helper 1 and T-helper 2 pathways. Conclusions Mucinous cystic neoplasm of the liver recapitulates ovarian stroma at the morphologic, DNA, RNA, and protein levels. These data support the concept that this tumor likely arises from ectopic primitive gonadal tissue and/or stromal cells with capacity to transdifferentiate to ovarian cortical cells.
Transcriptomic and Proteomic Analysis of Steatohepatitic Hepatocellular Carcinoma Reveals Novel Distinct Biologic Features
Treeck, Benjamin J. Van , Mounajjed, Taofic, Moreira, Roger K. , Orujov, Mushfig , Allende, Daniela , Bellizzi, Andrew M. , Lagana, Stephen M. , Davila, Jaime , Jessen, Erik , Graham, Rondell P. , Van Treeck, Benjamin J, Davila, Jaime I, Graham, Rondell P , Bellizzi, Andrew M , Davila, Jaime I

American Journal of Clinical Pathology | June 19, 2020 | Volume: 155 | Issue: 1 | Pages: 87-96

10.1093/ajcp/aqaa114 | PMID 32885245 Get It

AbstractObjectivesSteatohepatitic hepatocellular carcinoma is a distinct variant of hepatocellular carcinoma strongly associated with underlying nonalcoholic steatohepatitis. The molecular biology of steatohepatitic hepatocellular carcinoma is not fully elucidated, and thus we aimed to investigate the molecular underpinnings of this entity.MethodsTranscriptomic analysis using RNAseq was performed on eight tumor-nonneoplastic pairs of steatohepatitic hepatocellular carcinoma with comparison to conventional hepatocellular carcinoma transcriptomes curated in The Cancer Genome Atlas. Immunohistochemistry was used to validate key RNA-level findings.ResultsSteatohepatitic hepatocellular carcinoma demonstrated a distinctive differential gene expression profile compared with The Cancer Genome Atlas curated conventional hepatocellular carcinomas (n = 360 cases), indicating the distinctive steatohepatitic hepatocellular carcinoma morphology is associated with a unique gene expression profile. Pathway analysis comparing tumor-nonneoplastic pairs revealed significant upregulation of the hedgehog pathway based on GLI1 overexpression and significant downregulation of carnitine palmitoyltransferase 2 transcript. Glutamine synthetase transcript was significantly upregulated, and fatty acid binding protein 1 transcript was significantly downregulated and immunohistochemically confirmed, indicating steatohepatitic hepatocellular carcinoma tumor cells display a zone 3 phenotype.ConclusionsSteatohepatitic hepatocellular carcinoma demonstrates a distinctive morphology and gene expression profile, phenotype of zone 3 hepatocytes, and activation of the hedgehog pathway and repression of carnitine palmitoyltransferase 2, which may be important in tumorigenesis.
Genome-Wide Gene–Diabetes and Gene–Obesity Interaction Scan in 8,255 Cases and 11,900 Controls from PanScan and PanC4 Consortia
Tang, Hongwei, Jiang, Lai , Arslan, Alan A. , Bracci, Paige M. , Brennan, Paul , Canzian, Federico , Du, Mengmeng , Gallinger, Steven , Goodman, Phyllis J. , Visvanathan, Kala , Andreotti, Gabriella , Babić, Ana , Berndt, Sonja I. , Bueno‐de‐Mesquita, Bas , Buring, Julie E. , Campa, Daniele , Childs, Erica J., Fuchs, Charles S. , Gaziano, J. Michael , Hartge, Patricia, Hassam, Manal H., Holly, Elizabeth A. , Hoover, Robert N. , Hung, Rayjean J. , Kurtz, Robert C. , Lee, I-Min, Ng, Kimmie , Oberg, Ann L. , Peters, Ulrike , Porta, Miquel , Rabe, Kari G. , Rothman, Nathaniel , Scélo, Ghislaine , Sesso, Howard D. , Thompson, Ian M. , Tjønneland, Anne , Trichopoulou, Antonia , Wactawski‐Wende, Jean , Wentzensen, Nicolas , Zeleniuch‐Jacquotte, Anne , Jacobs, Eric J. , Petersen, Gloria M. , Wolpin, Brian M. , Chatterjee, Nilanjan , Li, Donghui , Arslan, Alan A , Brennan, Paul , Canzian, Federico , Bamlet, William R , Blackford, Amanda , Duell, Eric J , Hung, Rayjean J , Malats, Nuria , Milne, Roger L , Oberg, Ann L , Orlow, Irene , Sesso, Howard D , Tjønneland, Anne , Wactawski-Wende, Jean , Yu, Herbert , Amundadottir, Laufey , Klein, Alison P , Li, Donghui , Chaffee, Kari G. , Visvanathan, Kala , Porta, Miquel , Thompson, Ian M , Zeleniuch-Jacquotte, Anne , Stolzenberg‐Solomon, Rachael Z. , Freeman, Laura E. Beane , Giles, Graham G. , Kooperberg, Charles , Marchand, Loı̈c Le , Neale, Rachel Ε. , Shu, Xiao‐Ou , White, Emily , Zheng, Wei , Albanes, Demetrius , Bamlet, William R. , Chanock, Stephen Jacob , Duell, Eric J. , Goggins, Michael , Malats, Núria , Milne, Roger L. , Orlow, Irene , Rothman, Nathaniel , Silverman, Debra T. , Wilkens, Lynne R. , Yu, Kai , Ámundadóttir, Laufey T. , Risch, Harvey A. , Klein, Alison P. , Kraft, Peter , Wei, Peng

Cancer Epidemiology, Biomarkers & Prevention | June 16, 2020 | Volume: 29 | Issue: 9 | Pages: 1784-1791

10.1158/1055-9965.epi-20-0275 | PMID 32546605 Get It

Abstract Background: Obesity and diabetes are major modifiable risk factors for pancreatic cancer. Interactions between genetic variants and diabetes/obesity have not previously been comprehensively investigated in pancreatic cancer at the genome-wide level. Methods: We conducted a gene–environment interaction (GxE) analysis including 8,255 cases and 11,900 controls from four pancreatic cancer genome-wide association study (GWAS) datasets (Pancreatic Cancer Cohort Consortium I–III and Pancreatic Cancer Case Control Consortium). Obesity (body mass index ≥30 kg/m2) and diabetes (duration ≥3 years) were the environmental variables of interest. Approximately 870,000 SNPs (minor allele frequency ≥0.005, genotyped in at least one dataset) were analyzed. Case–control (CC), case-only (CO), and joint-effect test methods were used for SNP-level GxE analysis. As a complementary approach, gene-based GxE analysis was also performed. Age, sex, study site, and principal components accounting for population substructure were included as covariates. Meta-analysis was applied to combine individual GWAS summary statistics. Results: No genome-wide significant interactions (departures from a log-additive odds model) with diabetes or obesity were detected at the SNP level by the CC or CO approaches. The joint-effect test detected numerous genome-wide significant GxE signals in the GWAS main effects top hit regions, but the significance diminished after adjusting for the GWAS top hits. In the gene-based analysis, a significant interaction of diabetes with variants in the FAM63A (family with sequence similarity 63 member A) gene (significance threshold P < 1.25 × 10−6) was observed in the meta-analysis (PGxE = 1.2 ×10−6, PJoint = 4.2 ×10−7). Conclusions: This analysis did not find significant GxE interactions at the SNP level but found one significant interaction with diabetes at the gene level. A larger sample size might unveil additional genetic factors via GxE scans. Impact: This study may contribute to discovering the mechanism of diabetes-associated pancreatic cancer.
Associations between Genetically Predicted Blood Protein Biomarkers and Pancreatic Cancer Risk
Zhu, Jingjing , Shu, Xiao-Ou , Bao, Jiandong , Milne, Roger L. , Du, Mengmeng , Goodman, Phyllis J. , Li, Donghui , Bracci, Paige M. , Gallinger, Steven , Arslan, Alan A. , Scélo, Ghislaine , Visvanathan, Kala , Haiman, Christopher A. , Petersen, Gloria M. , Wu, Lang , Shu, Xiao-Ou , Bao, Jiandong , Milne, Roger L , Malats, Nuria , Duell, Eric J , Li, Donghui , Katzke, Verena , Van Den Eeden, Stephen K , Arslan, Alan A , Canzian, Federico , Yu, Herbert , Klein, Alison P , Visvanathan, Kala , Guo, Xingyi , Liu, Duo, Giles, Graham G. , Wu, Chong , White, Emily , Risch, Harvey A. , Malats, Núria , Duell, Eric J. , Neale, Rachel Ε. , Canzian, Federico , Kooperberg, Charles , Freeman, Laura E. Beane , Marchand, Loı̈c Le , Yu, Kai , Stolzenberg‐Solomon, Rachael Z. , Klein, Alison P. , Cai, Qiuyin , Long, Jirong , Zheng, Wei

Cancer Epidemiology, Biomarkers & Prevention | May 21, 2020 | Volume: 29 | Issue: 7 | Pages: 1501-1508

10.1158/1055-9965.epi-20-0091 | PMID 32439797 Get It

Abstract Background: Pancreatic ductal adenocarcinoma (PDAC) is one of the most lethal malignancies, with few known risk factors and biomarkers. Several blood protein biomarkers have been linked to PDAC in previous studies, but these studies have assessed only a limited number of biomarkers, usually in small samples. In this study, we evaluated associations of circulating protein levels and PDAC risk using genetic instruments. Methods: To identify novel circulating protein biomarkers of PDAC, we studied 8,280 cases and 6,728 controls of European descent from the Pancreatic Cancer Cohort Consortium and the Pancreatic Cancer Case-Control Consortium, using genetic instruments of protein quantitative trait loci. Results: We observed associations between predicted concentrations of 38 proteins and PDAC risk at an FDR of < 0.05, including 23 of those proteins that showed an association even after Bonferroni correction. These include the protein encoded by ABO, which has been implicated as a potential target gene of PDAC risk variant. Eight of the identified proteins (LMA2L, TM11D, IP-10, ADH1B, STOM, TENC1, DOCK9, and CRBB2) were associated with PDAC risk after adjusting for previously reported PDAC risk variants (OR ranged from 0.79 to 1.52). Pathway enrichment analysis showed that the encoding genes for implicated proteins were significantly enriched in cancer-related pathways, such as STAT3 and IL15 production. Conclusions: We identified 38 candidates of protein biomarkers for PDAC risk. Impact: This study identifies novel protein biomarker candidates for PDAC, which if validated by additional studies, may contribute to the etiologic understanding of PDAC development.
Participation of Women and Older Participants in Randomized Clinical Trials of Lipid-Lowering Therapies
Subramanian, C. R. , Riaz, Haris, Lone, Ahmad Naeem , Khan, Muhammad Shahzeb , Benson, Eve-Marie, Gulati, Martha , Khan, Safi U. , Khan, Muhammad Zia , Subramanian, Charumathi Raghu, Khan, Muhammad U. , Benson, Eve‐Marie, Alkhouli, Mohamad , Blaha, Michael Joseph , Blumenthal, Roger S. , Michos, Erin D.

JAMA Network Open | May 21, 2020 | Volume: 3 | Issue: 5 | Pages: e205202

10.1001/jamanetworkopen.2020.5202 | PMID 32437574 Get It

Use of Chloroquine and Hydroxychloroquine in COVID-19 and Cardiovascular Implications
Oren, Ohad , Yang, Eric H. , Gluckman, Ty J. , Michos, Erin D. , Blumenthal, Roger S. , Gersh, Bernard J. , Gersh, Bernard J , Yang, Eric , Michos, Erin D

Circulation: Arrhythmia and Electrophysiology | May 21, 2020 | Volume: 13 | Issue: 6 | Pages: No page available

10.1161/circep.120.008688 | PMID 32436730 Get It

Plasma Cell Myeloma Presenting With Amyloid-Laden Crystal-Negative Histiocytosis
Braunstein, Marc , Petrova‐Drus, Kseniya , Rosenbaum, Cara A. , Jayabalan, David , Rossi, Adriana , Salvatore, Steven , Pearse, Roger, Postley, John, Jhanwar, Yuliya, Geyer, Julia T. , Niesvizky, Rubén, Rech, Karen, Rossi, Adriana , Rech, Karen L. , Hassane, Duane C.

American Journal of Clinical Pathology | May 20, 2020 | Volume: 154 | Issue: 6 | Pages: 767-775

10.1093/ajcp/aqaa095 | PMID 32705137 Get It

Abstract Objectives Crystal-storing histiocytosis (CSH) is rare in plasma cell dyscrasias, with only 3 cases reported in the setting of amyloid. No cases of crystal-negative histiocytosis coincident with multiple myeloma and amyloidosis have been reported previously. Methods A 58-year-old woman presented with pain due to destructive bone lesions and was found to have plasma cell myeloma (PCM) and marrow amyloid deposition associated with crystal-negative histiocytosis. Differential diagnoses included Langerhans cell histiocytosis, Erdheim-Chester disease, and Rosai Dorfman disease. BRAF mutations were negative, and there was no evidence of paraprotein crystals, arguing against typical CSH. Results The patient was treated with bortezomib, cyclophosphamide, and dexamethasone, and she subsequently underwent autologous stem cell transplant and ixazomib maintenance. She achieved complete remission with improvement of her symptoms and preserved remission after following up at 60 months. Conclusions We describe a case of crystal-negative histiocytosis associated with PCM. CSH is a rare disorder associated with paraprotein-producing conditions in which immunoglobulins aggregate as intracellular crystals in the lysosomes of organ-specific phagocytic macrophages. Light chain tropism in PCM can also lead to the development of amyloid deposition in organs and, in rare cases, is associated with light chain aggregation as intracellular crystals in macrophages.
Modified acquisition strategy for reduced motion artifact in super resolution FSE multislice MRI: Application to prostate
Kargar, Soudabeh , Borisch, Eric A. , Froemming, Adam T. , Grimm, Roger C., King, Bernard F., Stinson, Eric G. , Riederer, Stephen J. , Kawashima, Akira

Magnetic Resonance in Medicine | May 18, 2020 | Volume: 84 | Issue: 5 | Pages: 2537-2550

10.1002/mrm.28315 | PMID 32419197 Get It

PurposeTo reduce slice‐to‐slice motion effects in multislice ‐weighted fast‐spin‐echo ( FSE) imaging, manifest as “scalloping” in reformats, by modification of the acquisition strategy and to show applicability in prostate MRI.Methods FSE images of contiguous or overlapping slices are typically acquired using multiple passes in which each pass is comprised of multiple slices with slice‐to‐slice gaps. Combination of slices from all passes provides the desired sampling. For enhancement of through‐plane resolution with super resolution or for reformatting into other orientations, subtle ≈1 mm motion between passes can cause objectionable “scalloping” artifact. Here we address this by subdivision of each pass into multiple segments. Interleaving of segments from the multiple passes causes all slices to be acquired over substantially the same time, reducing pass‐to‐pass motion effects. This was implemented in acquiring 78 overlapped FSE axial slices and studied in phantoms and in 14 prostate MRI patients. Super‐resolution axial images and sagittal reformats from the original and new segmented acquisitions were evaluated by 3 uroradiologists.ResultsFor all criteria of sagittal reformats, the segmented acquisition was statistically superior to the original. For all sharpness criteria of axial images, although the trend preferred the original acquisition, the difference was not significant. For artifact in axial images, the segmented acquisition was significantly superior.ConclusionsFor prostate MRI the new segmented acquisition significantly reduces the scalloping motion artifact that can be present in reformats due to long time lags between the acquisition of adjacent or overlapped slices while retaining image sharpness in the acquired axial slices.
Postmenopausal Hormone Therapy and Colorectal Cancer Risk by Molecularly Defined Subtypes and Tumor Location
Labadie, Julia , Harrison, Tabitha A. , Banbury, Barbara L. , Amtay, Efrat L, Bernd, Sonja, Brenner, Hermann , Campbell, Peter T. , Cao, Yin , Chang‐Claude, Jenny , Figueiredo, Jane C. , Gallinger, Steven , Gunter, Marc J. , Hoffmeister, Michael , Moreno, Vı́ctor , Murphy, Neil , Phipps, Amanda I. , Slattery, Martha L. , Thibodeau, Stephen N. , Guelpen, Bethany Van , Zaidi, Syed Hassan Ejaz , Peters, Ulrike , Labadie, Julia D , Banbury, Barbara , Campbell, Peter T , Cao, Yin , Chang-Claude, Jenny , English, Dallas R , Gunter, Marc J , Hoffmeister, Michael , Jenkins, Mark A , Milne, Roger L , Moreno, Victor , Ogino, Shuji , Sakoda, Lori C , Sun, Wei , Harrison, Tabitha A , Van Guelpen, Bethany , Brenner, Hermann , Murphy, Neil , Buchanan, Daniel D. , Chan, Andrew T. , English, Dallas R. , Giles, Graham G. , Hsu, Li , Jenkins, Mark A. , Lin, Yi , Milne, Roger L. , Sakoda, Lori C. , Southey, Melissa C. , Sun, Wei , Newcomb, Polly A.

JNCI Cancer Spectrum | May 13, 2020 | Volume: 4 | Issue: 5 | Pages: No page available

10.1093/jncics/pkaa042 | PMID 32923935 Get It

AbstractBackgroundPostmenopausal hormone therapy (HT) is associated with a decreased colorectal cancer (CRC) risk. As CRC is a heterogeneous disease, we evaluated whether the association of HT and CRC differs across etiologically relevant, molecularly defined tumor subtypes and tumor location.MethodsWe pooled data on tumor subtypes (microsatellite instability status, CpG island methylator phenotype status, BRAF and KRAS mutations, pathway: adenoma-carcinoma, alternate, serrated), tumor location (proximal colon, distal colon, rectum), and HT use among 8220 postmenopausal women (3898 CRC cases and 4322 controls) from 8 observational studies. We used multinomial logistic regression to estimate odds ratios (OR) and 95% confidence intervals (CIs) for the association of ever vs never HT use with each tumor subtype compared with controls. Models were adjusted for study, age, body mass index, smoking status, and CRC family history. All statistical tests were 2-sided.ResultsAmong postmenopausal women, ever HT use was associated with a 38% reduction in overall CRC risk (OR =0.62, 95% CI = 0.56 to 0.69). This association was similar according to microsatellite instability, CpG island methylator phenotype and BRAF or KRAS status. However, the association was attenuated for tumors arising through the serrated pathway (OR = 0.81, 95% CI = 0.66 to 1.01) compared with the adenoma-carcinoma pathway (OR = 0.63, 95% CI = 0.55 to 0.73; Phet =.04) and alternate pathway (OR = 0.61, 95% CI = 0.51 to 0.72). Additionally, proximal colon tumors had a weaker association (OR = 0.71, 95% CI = 0.62 to 0.80) compared with rectal (OR = 0.54, 95% CI = 0.46 to 0.63) and distal colon (OR = 0.57, 95% CI = 0.49 to 0.66; Phet =.01) tumors.ConclusionsWe observed a strong inverse association between HT use and overall CRC risk, which may predominantly reflect a benefit of HT use for tumors arising through the adenoma-carcinoma and alternate pathways as well as distal colon and rectal tumors.
Call to action regarding the vascular‐bipolar link: A report from the Vascular Task Force of the International Society for Bipolar Disorders
Goldstein, Benjamin I. , Bond, David J. , Chen, Pao‐Huan , Fagiolini, Andrea , Hájek, Tomáš , Hatch, Jessica, Prieto, Miguel L. , Sylvia, Louisa G. , Tsai, Shang‐Ying , Kcomt, Andrew , Fiedorowicz, Jess G. , Bond, David J , Chen, Pao-Huan , Fagiolini, Andrea , Hajek, Tomas , McIntyre, Roger S , Prieto, Miguel L , Tsai, Shang-Ying , Fiedorowicz, Jess G , Baune, Bernhard , Eyler, Lisa T. , Gomes, Fabiano A. , McElroy, Susan L. , McIntyre, Roger S. , Goldstein, Benjamin I

Bipolar Disorders | May 1, 2020 | Volume: 22 | Issue: 5 | Pages: 440-460

10.1111/bdi.12921 | PMID 32356562 Get It

Abstract Objectives The association of bipolar disorder with early and excessive cardiovascular disease was identified over a century ago. Nonetheless, the vascular‐bipolar link remains underrecognized, particularly with regard to how this link can contribute to our understanding of pathogenesis and treatment. Methods An international group of experts completed a selective review of the literature, distilling core themes, identifying limitations and gaps in the literature, and highlighting future directions to bridge these gaps. Results The association between bipolar disorder and vascular disease is large in magnitude, consistent across studies, and independent of confounding variables where assessed. The vascular‐bipolar link is multifactorial and is difficult to study given the latency between the onset of bipolar disorder, often in adolescence or early adulthood, and subsequent vascular disease, which usually occurs decades later. As a result, studies have often focused on risk factors for vascular disease or intermediate phenotypes, such as structural and functional vascular imaging measures. There is interest in identifying the most relevant mediators of this relationship, including lifestyle (eg, smoking, diet, exercise), medications, and systemic biological mediators (eg, inflammation). Nonetheless, there is a paucity of treatment studies that deliberately engage these mediators, and thus far no treatment studies have focused on engaging vascular imaging targets. Conclusions Further research focused on the vascular‐bipolar link holds promise for gleaning insights regarding the underlying causes of bipolar disorder, identifying novel treatment approaches, and mitigating disparities in cardiovascular outcomes for people with bipolar disorder.