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337 citation(s) found for "Qu, Jia".

CLPTM1L Promotes Growth and Enhances Aneuploidy in Pancreatic Cancer Cells
Jia, Jinping , Bosley, Allen D., Thompson, Abbey, Hoskins, Jason W. , Cheuk, Adam , Collins, Irene , Xiao, Zhen , Ylaya, Kris , Dzyadyk, Marta, Hernandez, Brenda Y. , Lynch, Charles F. , Lončarek, Jadranka , Altekruse, Sean F. , Zhang, Lizhi , Westlake, Christopher J. , Factor, Valentina M., Thorgeirsson, Snorri S., Bamlet, William R. , Hewitt, Stephen M. , Petersen, Gloria M. , Andrésson, Þorkell , Ámundadóttir, Laufey T. , Parikh, Hemang, Cozen, Wendy , Thorgeirsson, Snorri, Parikh, Hemang M. , Amundadottir, Laufey , Bamlet, William R , Hernandez, Brenda Y , Hoskins, Jason W

Cancer Research | March 20, 2014 | Volume: 74 | Issue: 10 | Pages: 2785-2795

10.1158/0008-5472.can-13-3176 | PMID 24648346 Get It

Abstract Genome-wide association studies (GWAS) of 10 different cancers have identified pleiotropic cancer predisposition loci across a region of chromosome 5p15.33 that includes the TERT and CLPTM1L genes. Of these, susceptibility alleles for pancreatic cancer have mapped to the CLPTM1L gene, thus prompting an investigation of the function of CLPTM1L in the pancreas. Immunofluorescence analysis indicated that CLPTM1L localized to the endoplasmic reticulum where it is likely embedded in the membrane, in accord with multiple predicted transmembrane domains. Overexpression of CLPTM1L enhanced growth of pancreatic cancer cells in vitro (1.3–1.5–fold; PDAY7 < 0.003) and in vivo (3.46-fold; PDAY68 = 0.039), suggesting a role in tumor growth; this effect was abrogated by deletion of two hydrophilic domains. Affinity purification followed by mass spectrometry identified an interaction between CLPTM1L and non-muscle myosin II (NMM-II), a protein involved in maintaining cell shape, migration, and cytokinesis. The two proteins colocalized in the cytoplasm and, after treatment with a DNA-damaging agent, at the centrosomes. Overexpression of CLPTM1L and depletion of NMM-II induced aneuploidy, indicating that CLPTM1L may interfere with normal NMM-II function in regulating cytokinesis. Immunohistochemical analysis revealed enhanced staining of CLPTM1L in human pancreatic ductal adenocarcinoma (n = 378) as compared with normal pancreatic tissue samples (n = 17; P = 1.7 × 10−4). Our results suggest that CLPTM1L functions as a growth-promoting gene in the pancreas and that overexpression may lead to an abrogation of normal cytokinesis, indicating that it should be considered as a plausible candidate gene that could explain the effect of pancreatic cancer susceptibility alleles on chr5p15.33. Cancer Res; 74(10); 2785–95. ©2014 AACR.
Sequence analysis of EBV immediate-early gene BZLF1 and BRLF1 in lymphomas
Yang, Ying , Jia, Yuping , Wang, Yun , Sun, Zhifu , Wang, Xiaofeng , Luo, Bing , Sun, Zhifu

Journal of Medical Virology | February 25, 2014 | Volume: 86 | Issue: 10 | Pages: 1788-1795

10.1002/jmv.23911 | PMID 24615673 Get It

P3–098: Effect of measurement variability on hippocampal volume–based clinical trial enrichment
Yu, Peng , Sun, Jia, Wolz, Robin, Stephenson, Diane , Cole, Patricia E., Hill, David , Schwarz, Adam J. , Jack, Clifford R.

Alzheimer's & Dementia | October 9, 2013 | Volume: 9 | Issue: 4S_Part_15 | Pages: No page available

10.1016/j.jalz.2013.05.1168 Get It

Electronic Noise in CT Detectors: Impact on Image Noise and Artifacts
Duan, Xinhui , Wang, Jia , Schmidt, Bernhard , Allmendinger, Thomas , Grant, Katharine L., Flohr, Thomas , Leng, Shuai , McCollough, Cynthia H.

American Journal of Roentgenology | September 24, 2013 | Volume: 201 | Issue: 4 | Pages: W626-W632

10.2214/ajr.12.10234 | PMID 24059402 Get It

3‐hydroxykynurenine and other Parkinson's disease biomarkers discovered by metabolomic analysis
Beach, Thomas G. , Guo, Lining , LeWitt, Peter A. , Li, Jia , Lü, Mei , Adler, Charles H.

Movement Disorders | July 19, 2013 | Volume: 28 | Issue: 12 | Pages: 1653-1660

10.1002/mds.25555 | PMID 23873789 Get It

ABSTRACT Parkinson's disease (PD) biomarkers are needed to enhance therapeutics research and to understand PD pathogenesis. Methods that simultaneously measure hundreds of small molecular‐weight compounds—metabolomic analysis–“fingerprint” disease‐specific alterations in individual compounds or metabolic pathways. Beyond a nontargeted search for PD biomarkers, we hypothesized that PD cerebrospinal fluid would show increased formation of the excitotoxin 3‐hydroxykynurenine and diminished concentration of the antioxidant glutathione. Cerebrospinal fluid was collected at <4 hours postmortem from 48 pathologically‐verified PD subjects and 57 comparably‐aged controls. Assays involved ultra‐high‐performance liquid and gas chromatography linked to mass spectrometry. We used univariate techniques to determine fold‐changes in concentrations of biochemicals; false‐discovery rates were calculated to exclude spurious findings. Data was modeled using a Support Vector Machine for analyzing compounds selected by Welch's t test. Classification accuracy was determined by cross‐validation. Of 243 structurally‐identified biochemicals,19 compounds differentiated PD from controls at a 20% false‐discovery level. In PD, mean 3‐hydroxykynurenine concentration was increased by one‐third, and mean oxidized glutathione was decreased by 40% (for each, P < .01). Four of the 19 compounds differentiating PD from controls were N‐acetylated amino acids, suggesting a generalized alteration in N‐acetylation activity. The Support Vector Machine classification model distinguished between groups at 83% sensitivity and 91% specificity for the learning data, and at 65% and 79% from cross‐validation. In this study, the first for metabolomic profiling of PD cerebrospinal fluid, we found several novel biomarkers and offer new directions for recognizing disease‐specific biochemical indicators. The findings support involvement of excitotoxicity and oxidative stress in the pathogenesis of PD. © 2013 International Parkinson and Movement Disorder Society
Effects of the Inflammatory Cytokines TNF-α and IL-13 on Stromal Interaction Molecule–1 Aggregation in Human Airway Smooth Muscle Intracellular Ca2+ Regulation
Li, Jia , Delmotte, Philippe , Aravamudan, Bharathi, Prakash, Y. S. , Sieck, Gary C. , Pabelick, Christina M. , Prakash, Y S , Sieck, Gary

American Journal of Respiratory Cell and Molecular Biology | May 28, 2013 | Volume: 49 | Issue: 4 | Pages: 601-608

10.1165/rcmb.2013-0040oc | PMID 23713409 Get It

Abstract Inflammation elevates intracellular Ca2+ ([Ca2+]i) concentrations in airway smooth muscle (ASM). Store-operated Ca2+ entry (SOCE) is an important source of [Ca2+]i mediated by stromal interaction molecule–1 (STIM1), a sarcoplasmic reticulum (SR) protein. In transducing SR Ca2+ depletion, STIM1 aggregates to form puncta, thereby activating SOCE via interactions with a Ca2+ release-activated Ca2+ channel protein (Orai1) in the plasma membrane. We hypothesized that STIM1 aggregation is enhanced by inflammatory cytokines, thereby augmenting SOCE in human ASM cells. We used real-time fluorescence microscopic imaging to assess the dynamics of STIM1 aggregation and SOCE after exposure to TNF-α or IL-13 in ASM cells overexpressing yellow fluorescent protein–tagged wild-type STIM1 (WT-STIM1) and STIM1 mutants lacking the Ca2+-sensing EF-hand (STIM1-D76A), or lacking the cytoplasmic membrane binding site (STIM1ΔK). STIM1 aggregation was analyzed by monitoring puncta size during the SR Ca2+ depletion induced by cyclopiazonic acid (CPA). We found that puncta size was increased in cells expressing WT-STIM1 after CPA. However, STIM1-D76A constitutively formed puncta, whereas STIM1ΔK failed to form puncta. Furthermore, cytokines increased basal WT-STIM1 puncta size, and the SOCE triggered by SR Ca2+ depletion was increased in cells expressing WT-STIM1 or STIM1-D76A. Meanwhile, SOCE in cells expressing STIM1ΔK and STIM1 short, interfering RNA (siRNA) was decreased. Similarly, in cells overexpressing STIM1, the siRNA knockdown of Orai1 blunted SOCE. However, exposure to cytokines increased SOCE in all cells, increased basal [Ca2+]i, and decreased SR Ca2+ content. These data suggest that cytokines induce a constitutive increase in STIM1 aggregation that contributes to enhanced SOCE in human ASM after inflammation. Such effects of inflammation on STIM1 aggregations may contribute to airway hyperresponsiveness.
Outcomes of Cardiac Resynchronization Therapy in the Elderly
Killu, Ammar M. , WU, JIA‐HUI, Friedman, Paul A. , Shen, Win-Kuang, Webster, Tracy L., Brooke, Kelly L., Hodge, David O. , Wiste, Heather J. , Cha, Yong‐Mei

Pacing and Clinical Electrophysiology | December 18, 2012 | Volume: 36 | Issue: 6 | Pages: 664-672

10.1111/pace.12048 | PMID 23252710 Get It

BackgroundOctogenarians (>80 years) have been underrepresented in clinical trials of cardiac resynchronization therapy (CRT).ObjectiveTo determine the benefit of CRT with or without a defibrillator in older elderly patients.MethodsWe retrospectively studied consecutive patients who received CRT at our institution from 2002 through 2008. New York Heart Association (NYHA) class and echocardiographic parameters were assessed before and after CRT. Thirty‐day complications after device implant were collected. Survival data were obtained from the national death and location database. Data were compared between those 80 years and younger and those older than 80 years.ResultsOf 728 patients identified, 90 (12.4%) were older than 80 years. After CRT, older and younger patients had similar improvements in NHYA class (P = 0.41), ejection fraction (P = 0.48), and mitral valve regurgitation (MR) severity (P = 0.42). In the older patients, defibrillator implantation was associated with comparable improvement in NYHA class, ejection fraction, and MR grade severity (P > 0.05), as in those without a defibrillator. Overall survival was worse in octogenarians than in the younger patients by Kaplan‐Meier estimates (P = 0.001). Multivariate analysis showed similar survival between the younger and older subjects (hazard ratio, 1.23; 95% confidence interval, 0.83–1.84; P = 0.31). The observed complication rate in all study subjects was 12.2%, with no difference between the two age groups.ConclusionOctogenarian patients who received CRT with or without a defibrillator for advanced heart failure had similar clinical benefits as younger patients. CRT should not be withheld from octogenarians meeting current selection guidelines.
Differentiation of Calcium Oxalate Monohydrate and Calcium Oxalate Dihydrate Stones Using Quantitative Morphological Information from Micro-Computerized and Clinical Computerized Tomography
Duan, Xinhui , Qu, Mingliang , Wang, Jia , Trevathan, James K. , Vrtiska, Terri J., Williams, James C. , Krambeck, Amy E. , Lieske, John C. , McCollough, Cynthia H. , Trevathan, James K

Journal of Urology | November 7, 2012 | Volume: 189 | Issue: 6 | Pages: 2350-2356

10.1016/j.juro.2012.11.004 | PMID 23142201 Get It

Kidney Stone Volume Estimation from Computerized Tomography Images Using a Model Based Method of Correcting for the Point Spread Function
Duan, Xinhui , Wang, Jia , Qu, Mingliang , Krambeck, Amy E. , Leng, Shuai , Liu, Yu , McCollough, Cynthia H.

Journal of Urology | July 21, 2012 | Volume: 188 | Issue: 3 | Pages: 989-995

10.1016/j.juro.2012.04.098 | PMID 22819107 Get It

IC‐P‐041: Prediction of disease progression in mild cognitive impairment from vMRI and concordance with CSF biomarkers
Yu, Peng , Schwarz, Adam J. , Sun, Jia , Kelleher, Thomas, Wang, Huanli , Davidson, Chris, Frank, Denise, Cole, Patricia E., Hill, David , Beckett, Laurel , Jack, Clifford R.

Alzheimer's & Dementia | July 19, 2012 | Volume: 8 | Issue: 4S_Part_1 | Pages: No page available

10.1016/j.jalz.2012.05.073 Get It