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Prakash, Y S

0000-0002-2968-224X

Mayo Clinic

Department of Physiology and Biomedical Engineering, Mayo Clinic, Rochester, MN 55905.

Citations 133

Enterochromaffin cells as a cellular integration hub for cooperative microbial signaling to modulate gut serotonin and motility
Xiao, Yang , Till, Lisa , Gupta, Yash, Mercado‐Perez, Arnaldo , Bhagwate, Aditya V., Bellampalli, Shreya S. , Stark, Alejandro , Sekhon, Prabhjot K., Singh, Vaidhvi , Tienter, Dennis, Thompson, Michael A. , Kossick, Kimberlee , Krueger, Eugene W., Kalari, Krishna R., Hawkins, Kaitlyn R., Edwards, Brian S. , Alcaino, Constanza, Guo, Chun‐Jun , Druliner, Brooke R., Ördög, Tamás , Farrugia, Gianrico , Kashyap, Purna , Louwies, Tijs, Mars, Ruben A T, Mercado-Perez, Arnaldo, Bellampalli, Shreya S , Stark Quiroz, Alejandro , Liu, Rongfang , Thompson, Michael A , Kossick, Kimberlee , Lee, Jeong-Heon , van der Es, Daan , Willett, Julia L E , Wongkrasant, Preedajit , Prakash, Y S , Ordog, Tamas , Farrugia, Gianrico , Beyder, Arthur , Smith-Edwards, Kristen M , Kashyap, Purna C , Louwies, Tijs , Mars, Ruben A. , Gupta, Yash , Bhagwate, Aditya , Sekhon, Prabhjot Kaur , Heitman, Laura H. , Krueger, Eugene W. , Lee, Jeong‐Heon , Alcaino, Constanza , Willett, Julia L. E. , Wongkrasant, Preedajit , Prakash, Y. S. , Druliner, Brooke R. , Beyder, Arthur

Proceedings of the National Academy of Sciences | August 24, 2026 | Volume: 123 | Issue: 35 | Pages: No page available

10.1073/pnas.2533336123 Get It

The intestinal epithelium is exposed to diverse combinations of microbiota-derived compounds; however, the mechanisms by which the host integrates these signals remain poorly defined. Studying two highly abundant microbial metabolites, we identified the purine metabolite hypoxanthine as an effector metabolite that directly drives signaling and the short-chain fatty acid butyrate as a regulatory metabolite that conditions host responsiveness. Specifically, hypoxanthine activates the adenosine A1 receptor–TRPC4 axis in enterochromaffin (EC) cells, triggering calcium influx and serotonin release resulting in accelerated gastrointestinal transit locally and increased platelet activation systemically. In contrast, butyrate epigenetically upregulates specific G protein–coupled receptors and ion channels to enhance response to hypoxanthine and the neurotransmitters norepinephrine and dopamine. These findings define a cooperative signaling framework and highlight the role of EC cells as a distinct epithelial signaling hub that senses and integrates microbial metabolite signals to drive physiological responses. Our findings provide a mechanistic foundation for therapeutic strategies that leverage combinatorial microbial signaling.
Polymeric nanoparticle-mediated siRNA delivery into primary human bronchial airway cells
Thompson, Michael A., Hamrick, Samantha K. , Borkar, Niyati A. , Ravi, Preetham , Çiçek, Yağız Anıl , Lehot, Victor , Goswami, Ritabrita , Nagaraj, Harini , Nasim, Nourina , Rotello, Vincent M , Pabelick, Christina M , Prakash, Y S , Borkar, Niyati , Rotello, Vincent M. , Pabelick, Christina M. , Prakash, Y. S.

American Journal of Physiology-Cell Physiology | August 10, 2026 | Volume: 331 | Issue: 3 | Pages: C783-C796

10.1152/ajpcell.00127.2026 Get It

siRNA delivery to target cellular processes is an appealing area in lung diseases such as asthma. To realize this potential requires efficient, targeted cytosolic delivery without cellular toxicity or siRNA degradation. We demonstrate the efficacy of PONI-Guan nanoparticles in accessing airway epithelial and smooth muscle cells with specific siRNA targeting of mRNAs of interest while maintaining barrier integrity and avoiding cellular toxicity.
Dysregulated iron metabolism in remodeling of aging asthmatic human airways
Ngassie, Maunick Lefin Koloko, Ortiz, Yamillie , Ravi, Preetham , Pfeffer-Kleemann, Daniel A., Hamrick, Samantha K. , Thompson, Michael A., Pabelick, Christina M. , Prakash, Y. S. , Ngassie, Maunick Lefin Koloko , Koloko Ngassie, Maunick Lefin , Pfeffer-Kleemann, Daniel , Pabelick, Christina M , Prakash, Y S , Fang, Yun Hua

American Journal of Physiology-Cell Physiology | July 29, 2026 | Volume: 331 | Issue: 3 | Pages: C558-C572

10.1152/ajpcell.00897.2025 Get It

Iron is an essential element for cellular homeostasis and functionality. Increased iron in the lung is associated with aging and asthma in the elderly (AIE). Using human airway smooth muscle cells from young versus elderly versus AIE patients, we found that dysregulated iron metabolism (more than iron accumulation), resulting in activation of antioxidant systems and increased susceptibility to ferroptosis, occurs in AIE, contributing to cell hyperplasia and matrix remodeling of aging and AIE.
The Iron Lung: Ferroptosis and Iron Regulation in Aging and Lung Diseases
Ngassie, Maunick Lefin Koloko , Ortiz, Yamillie , Ravi, Preetham , Pfeffer-Kleemann, Daniel A., Borkar, Niyati A. , Pabelick, Christina M. , Prakash, Y. S. , Koloko Ngassie, Maunick Lefin , Pfeffer-Kleemann, Daniel , Borkar, Niyati , Pabelick, Christina M , Prakash, Y S

Physiology | June 27, 2026 | Volume: 42 | Issue: 1 | Pages: 000-000

10.1152/physiol.00062.2025 Get It

Iron is an important metal element regulating biological processes such as gene expression, electron transport, cell proliferation, differentiation and division, and cellular respiration. Regulation of iron levels is therefore critical, with excess iron accumulation leading to iron-dependent lipid peroxidation and cell death (ferroptosis). Factors such as aging and environmental exposures (e.g., high/low oxygen, particulate iron) can disrupt iron homeostasis. Iron-dependent processes influence downstream pathways such as inflammation, mitochondrial energetics, and remodeling (proliferation, fibrosis), pathways involved in lung diseases particularly at the extremes of age, from hyperoxic lung injury in neonates to chronic diseases such as asthma, chronic obstructive pulmonary disease (COPD), and pulmonary fibrosis (PF) that increase with age. Although these diseases involve structural and functional changes in bronchial versus alveolar compartments, including airway hyperreactivity, altered mucus production, cell proliferation and migration, increased extracellular matrix (ECM) remodeling, senescence, and metabolic dysregulation, the casual or consequential links between iron dysregulation and disease pathology, particularly with aging, are still being investigated. The aim of this topical review is to 1) highlight current knowledge regarding iron regulation in normal lung versus lung diseases, 2) identify known roles of iron in lung homeostasis and the contribution of iron dysregulation in lung diseases with aging, and 3) explore the potential benefit of targeting iron regulation and/or ferroptosis in lung diseases.
Hyperoxia and iron homeostasis in developing human airway smooth muscle
Ortiz, Yamillie , Ngassie, Maunick Lefin Koloko , Bartman, Colleen M. , Pabelick, Christina M. , Prakash, Y. S. , Koloko Ngassie, Maunick Lefin , Prakash, Y S , Pabelick, Christina M , Bartman, Colleen M

American Journal of Physiology-Lung Cellular and Molecular Physiology | June 18, 2026 | Volume: 331 | Issue: 2 | Pages: L144-L154

10.1152/ajplung.00027.2026 Get It

Recognizing that antioxidant systems are impaired in the airways of premature infants, we used human fetal airway cells to explore the impact of oxygen on iron regulation and iron-mediated cell death (ferroptosis). We find moderate hyperoxia impairs antioxidant systems that prevent ferroptosis and dysregulates iron metabolism, while severe hyperoxia has a negative effect on mechanisms driving the early onset of ferroptosis. Inhibitors of ferroptosis decrease iron and lipid peroxidation, demonstrating links between oxygen and iron regulation in developing airways.
Mechanosensitive Piezo Channels Contribute to Airway Changes in Chronic Obstructive Pulmonary Disease
Migulina, Nataliya , Roos, Benjamin, Borghuis, Theo, Ngassie, Maunick Lefin Koloko , Drake, Li Y. , Timens, Wim , Vogel, Elizabeth R. , Pabelick, Christina M. , Roos, Ben, Koloko Ngassie, Maunick Lefin , Drake, Li , Brandsma, Corry-Anke , Burgess, Janette K , Prakash, Y S , Pabelick, Christina M , Vogel, Elizabeth R , Timens, Wim , Roos, B., Brandsma, Corry‐Anke , Burgess, Janette K. , Prakash, Y. S.

No container title available | June 17, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.64898/2026.06.14.732150 Get It

Abstract As an intrinsically mechanosensitive organ, the lung experiences a range of mechanical forces. Chronic obstructive pulmonary disease (COPD) involves abnormal macroscopic cellular and extracellular matrix (ECM) changes that impact mechanical properties of the lung. Mechanosensitive Piezo1/2 channels are expressed in the lung including on airway smooth muscle cells (ASM) that mediate cellular responses to stretch and ECM biomechanics. The expression and roles of Piezos in COPD lung ASM are not known. We hypothesized that Piezo expression and activation are altered in COPD lung ASM influencing ECM regulation. Distribution of Piezo proteins in ASM and epithelium of small airways of COPD stage II and IV vs. non-COPD controls was assessed using immunohistochemistry and ImageJ (n=10-17/group). Isolated ASM cells from control (n=6) vs. COPD stage II and IV patients (n=3 each stage) were exposed to stretch or the Piezo1 agonist Yoda1 followed by measurement of ECM gene and protein expression. Less Piezo2 staining was observed in COPD IV patients compared to controls, with lesser area and intensity of staining in the epithelial layer, and lower intensity of staining in ASM and small airways as a whole. Fura-2-based imaging of ASM Ca 2+ showed lower influx after Yoda1 exposure in COPD II compared to control and COPD IV. Gene expression of Piezo1 increased upon stretching in controls but not in COPD ASM, while Piezo2 protein expression decreased with stretching in all groups. Yoda1 treatment resulted in decreased collagen1 , fibulin1 and periostin gene and collagen 1 and periostin protein expression in ASM. Overall, these results support a role for Piezo activation in abnormal ECM-ASM cell crosstalk in COPD.
Loss of miRNA-153 promotes EndMT and compromises lung vascular integrity
Elmadbouh, Ibrahim , Zhong, Zhunran, Wang, Li, Chikoore, Stembile, Endoni, Benney, Sah, Aaditya, Thompson, M, Hoeppner, Luke H. , Prakash, Y. S. , Yuan, J, Pabelick, C M, Thompson, Michael A. , Yuan, Jason X.‐J. , Thompson, Michael A , Prakash, Y S , Yuan, Jason X-J , Pabelick, Christina M , Babicheva, Aleksandra , Endoni, Benney T. , Sah, Aaditya, Pabelick, Christina M. , Babicheva, Aleksandra

American Journal of Respiratory Cell and Molecular Biology | May 22, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.1093/ajrcmb/aanag108 Get It

Abstract Endothelial-to-mesenchymal transition (EndMT) is a biological process through which lung vascular endothelial cells (ECs) transdifferentiate into mesenchymal-like cells. EndMT has recently been implicated in the development and progression of pulmonary vascular remodeling in pulmonary hypertension (PH); however, its underlying regulatory mechanisms remain incompletely understood. MicroRNAs (miRNAs) are key post-transcriptional regulators of EC gene expression and cellular responses to various stimuli. Notably, microRNA-153 (miR-153) has been shown to directly target SNAI1 to modulate epithelial-to-mesenchymal transition (EMT), a process closely related to EndMT and extensively studied in cancer. Whether miR-153 also participates in EndMT regulation, however, remains unknown. In this study, we demonstrate that 72-hour hypoxic exposure induces SNAI1-mediated EndMT in human lung vascular ECs. Hypoxia also increased cell proliferation and disrupted intercellular junctions, leading to enhanced endothelial permeability. Reduced miR-153 expression was observed in both hypoxia- and TGF-β1-induced EndMT, as well as in ECs isolated from PH patients exhibiting an EndMT phenotype. Similar to hypoxia, TGF-β1 promoted EC permeability. Loss of miR-153 enhanced SNAI1-mediated EndMT, endothelial survival, and permeability under normoxic conditions, whereas miR-153 overexpression attenuated EndMT induced by hypoxia or TGF-β1. However, miR-153 restoration did not completely restore endothelial barrier integrity disrupted by these stimuli. In vitro findings were validated in experimental PH model. In conclusion, miR-153 serves as a critical regulator of EndMT, maintaining endothelial identity and barrier function. Therapeutic delivery of miR-153 may therefore represent a novel strategy to inhibit EndMT and attenuate pulmonary vascular remodeling in PH.
Differential effects of α7nAChR activation in a murine model of asthma
Borkar, Niyati A. , Lee, Kenge K., Thompson, Michael A, Bartman, Colleen M. , Nesbitt, Lisa, Hamrick, Samantha K. , Fang, Yun Hua, Prakash, Y. S. , Pabelick, Christina M, Pabelick, Christina M. , Nesbitt, Lisa L, Prakash, Y S , Pabelick, Christina M , Bartman, Colleen M , Thompson, Michael A.

American Journal of Physiology-Lung Cellular and Molecular Physiology | March 30, 2026 | Volume: 330 | Issue: 5 | Pages: L539-L556

10.1152/ajplung.00119.2025 Get It

The studies demonstrate the differential effects of the nicotinic acetylcholine receptors (nAChRs) regulating airway hyperreactivity (AHR) and remodeling in a mixed allergen model of asthma. We compared wild-type (WT) versus global α7nAChR knockout (Glα7KO) versus smooth muscle-specific α7nAChR KO (smα7KO) mice. We found that smα7KO improved lung function and AHR in mice challenged with MA and in the presence of nicotine, whereas MA-challenged Glα7KO in the presence of nicotine showed worsened AHR.
3-Mercaptopyruvate sulfurtransferase regulates mitochondrial metabolism and epithelial differentiation in neonatal patient-derived airway cells
Ganguly, Abhrajit , Carter, Cynthia M., Negron, Aristides Rivera, Pierce, Paul T., Walters, Matthew S. , Prakash, Y. S., Tipple, Trent E. , Richardson, Arlan , Prakash, Y. S. , Walters, Matthew S , Prakash, Y S , Tipple, Trent E , Carter, Cynthia, Rogers, Lynette Kay

American Journal of Physiology-Lung Cellular and Molecular Physiology | March 28, 2026 | Volume: 330 | Issue: 5 | Pages: L557-L566

10.1152/ajplung.00418.2025 Get It

This study identifies 3-mercaptopyruvate sulfurtransferase (MPST) as a previously unrecognized regulator of neonatal airway epithelial development. In our neonatal patient-derived three-dimensional organotypic model, hyperoxia reduces MPST, and MPST loss alters mitochondrial metabolism and epithelial differentiation programs. These findings indicate that MPST deficiency contributes to mitochondrial dysfunction under hyperoxic conditions and highlight MPST-linked pathways as potential therapeutic targets to mitigate early-life airway injury and remodeling relevant to infants with bronchopulmonary dysplasia (BPD).
Quantitative proteomics links mitochondrial dysfunction to metabolic changes and epithelial differentiation defects in hyperoxia-exposed neonatal airway cells
Ganguly, Abhrajit , Carter, Cynthia, Negron, Aristides Rivera, Moreira, Alvaro , Walters, Matthew S. , Prakash, Y. S. , Tipple, Trent E. , Richardson, Arlan, Moreira, Alvaro , Walters, Matthew S , Prakash, Y S , Tipple, Trent E , Zhong, Hua , Rogers, Lynette Kay

American Journal of Physiology-Lung Cellular and Molecular Physiology | December 5, 2025 | Volume: 330 | Issue: 1 | Pages: L87-L103

10.1152/ajplung.00205.2025 Get It

We report that moderate hyperoxia during a critical window of mucociliary differentiation disrupts terminal maturation in neonatal airway epithelial cells cultured in a three-dimensional model. Hyperoxia induces mitochondrial bioenergetic dysfunction and metabolic reprogramming, with proteomic analysis identifying complex I disruption as a key driver of impaired differentiation. Overall, these findings reveal a previously underrecognized link between mitochondrial bioenergetics and airway epithelial development, positioning metabolic dysfunction as an early trigger of hyperoxia-induced neonatal airway injury.