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Repeat-associated ataxias in a German patient cohort analysed by targeted parallel long-read sequencing
Erdmann, Hannes , Schaub, Annalisa , Lucas, Morghan C. , Scholz, Veronika , Benet‐Pagès, Anna , Dineiger, Christine, Mayer, Veronika, Buren, Inga Van , Breithausen, Eva, Akbari, Karl, Sauer, Mayra , Krakowsky, Rosanna , Schnabel, Franziska , Dunker, Konstanze, Fabritius, Lena, Gerb, Johannes , Grabova, Denis , Möhwald, Ken , Näher, Marius, Steinmetz, Karoline , Thiessen, Franziska, Jäck, Alexander , Schreyer, Isolde, Mämecke, Larissa, Wilfling, Sibylle, Wunderlich, Gilbert , Hellenbroich, Yorck, Muhle, Kirsten, Claus, Inga, Klopstock, Thomas, Strupp, Michael, Xiong, Chengjie , Huppert, Doreen , Becker‐Bense, Sandra , Filippopulos, Filipp , Kilpert, Fabian , Kaya, Sabine, Schöberl, Florian, Neuhann, Teresa , Holinski‐Feder, Elke , Zwergal, Andreas , Abicht, Angela, Cordts, Isabell , Gerb, Johannes , Brenner, David , Xiong, Chengjie , Kilpert, Fabian , Depienne, Christel , Zwergal, Andreas , Becker, Kerstin , Mayer, Veronika, Akbari, Karl, Schneider, Christine B. , Thiessen, Franziska, Schneider-Gold, Christiane , Zittel, Simone , Petersen, Christina, Huchtemann, Tessa , Höglinger, Günter U. , Leitão, Elsa , Depienne, Christel , Abicht, Angela

Brain | September 1, 2025 | Volume: 149 | Issue: 3 | Pages: 993-1006

10.1093/brain/awaf318 | PMID 40898875 Get It

Abstract Hereditary adult-onset ataxias are a heterogeneous group of phenotypically overlapping conditions, often caused by pathogenic expansions of short tandem repeats. Currently, 18 repeat disorders with a core phenotype of adult-onset ataxia are known. Diagnosis typically relies on sequential PCR-based methods, which are labour-intensive and lack precision. Long-read sequencing (LRS) has the potential to overcome these limitations and is currently implemented and validated in clinical genetics. Using clinical nanopore Cas9-targeted sequencing (Clin-CATS) for parallel in-depth repeat analysis, we evaluated a diagnostic cohort of 513 adult-onset ataxia patients, determining frequencies of all known repeat-associated ataxias except Spinocerebellar ataxia 4 (SCA4), as well as the carrier frequencies for autosomal-recessive disorders, RFC1 spectrum disorder and Friedreich’s ataxia (FRDA). Additionally, phenotypes of patients with established genetic diagnoses were characterized, especially those of patients living with RFC1 spectrum disorder and SCA27B. Repeat-associated ataxias were confirmed in 33.3% of cases, including rare ataxias, such as SCA10, SCA36 and SCA37, alongside as the most prevalent conditions SCA27B and RFC1 spectrum disorder. Potentially pathogenic expansions in FGF14 were identified in an additional 4.7% of patients. Testing of another 347 patients for ZFHX3 expansions linked to SCA4 did not identify any cases. Dual diagnoses were frequent, occurring in 6.4% of patients with repeat-associated ataxia. We confirmed a high RFC1 spectrum disorder carrier frequency (7.2%) and reclassified certain FXN expansions as likely non-pathogenic, resulting in a lower than estimated carrier frequency for FRDA of 0.8%. We also identified novel repeat configurations in several loci and illustrated the high heterogeneity of repeat expansions in RFC1, highlighting it as a potential source of false results when using PCR-based methods. This study underscores the diagnostic advantages of LRS for comprehensive repeat analysis and recommends its adoption as a standard in clinical genetics, replacing Southern blot and PCR-based approaches. Furthermore, based on our findings in a large patient cohort a re-evaluation of existing phenotype-genotype correlations is recommended as well as evaluating additional parameters alongside the repeat length to improve diagnostic precision of repeat analysis.
Association of plasma Alzheimer's disease biomarkers with cognitive decline in cognitively unimpaired individuals
Wiste, Heather J. , Therneau, Terry M. , Griswold, Michael , Binette, Alexa Pichet , Stomrud, Erik , Barthélemy, Nicolas R. , Braunstein, Joel B. , Verghese, Philip B. , Graff‐Radford, Jonathan , Lowe, Val J. , Gunter, Jeffrey L. , Petersen, Ronald C. , Jack, Clifford R. , Jack, Clifford R , Stomrud, Erik , Pichet Binette, Alexa , Cogswell, Petrice M. , Mattsson, Niklas , Palmqvist, Sebastian , Bateman, Randall J. , West, Tim , Machulda, Mary M. , Algeciras‐Schimnich, Alicia , Schwarz, Christopher G. , Senjem, Matthew L. , Knopman, David S. , Vemuri, Prashanthi , Hansson, Oskar

Alzheimer's & Dementia | August 30, 2025 | Volume: 21 | Issue: 9 | Pages: No page available

10.1002/alz.70625 | PMID 40883967 Get It

Abstract INTRODUCTION Plasma biomarkers’ utility for predicting incident mild cognitive impairment (MCI) remains unclear. We evaluated associations of plasma Alzheimer's disease (AD) biomarkers and amyloid positron emission tomography (PET) with transitions from cognitively unimpaired (CU) to MCI in the Mayo Clinic Study of Aging (MCSA) and BioFINDER‐2 studies. METHODS Associations of continuous baseline plasma biomarker levels and amyloid PET Centiloid with progression to MCI, adjusting for age, sex, and education, were evaluated with Cox proportional hazards models. RESULTS The study included 381 MCSA and 584 BioFINDER‐2 participants. Amyloid PET and percent phosphorylated to non‐phosphorylated tau217 (%p‐tau217) were strong predictors of progression to MCI in both cohorts: hazard ratios of 1.49 and 1.23 in the MCSA and 1.72 and 1.65 in BioFINDER, respectively. Amyloid beta 42/40 was a significant predictor in BioFINDER‐2 only (hazard ratio 2.20). DISCUSSION Plasma %p‐tau217 was associated with progression from CU to MCI in both cohorts, although differences in biomarker associations may be related to differences in the two cohorts. Highlights Mass‐spectrometry‐based plasma phosphorylated tau217 was associated with cognitively unimpaired to mild cognitive impairment (MCI) progression. Plasma amyloid beta 42/40 was a significant predictor in BioFINDER but not the Mayo Clinic Study of Aging (MCSA). Amyloid positron emission tomography (PET) was the strongest predictor of progression to MCI in the MCSA. Plasma had added value to amyloid PET in BioFINDER but not the MCSA. Biomarker performance may vary with cohort and biomarker measurement differences.
Safety and efficacy of BCMA-directed chimeric antigen receptor T-cell therapy for the treatment of plasma cell leukemia
Fortuna, Gliceida Galarza , Peres, Lauren C. , Corraes, Andre De Menezes Silva , Hovanky, Vanna, Shune, Leyla , McGuirk, Joseph P. , Avilla, Gabriel De, Khouri, Jack , Dima, Danai , Gaballa, Mahmoud , Dhakal, Binod , Forsberg, Peter A. , Godara, Amandeep , Afrough, Aimaz , Anderson, Larry D. , Davis, James A. , Mann, Hashim , Purvey, Sneha , Clark, William , Htut, Myo, Ferreri, Christopher J. , Voorhees, Peter M. , Hashmi, Hamza , Patel, Krina K. , Sidana, Surbhi , Lin, Yi, Sborov, Douglas W. , Galarza Fortuna, Gliceida M , De Menezes Silva Corraes, Andre , McGuirk, Joseph , Khouri, Jack , Dima, Danai , Dhakal, Binod , Godara, Amandeep , Anderson, Larry D , Herr, Megan M. , Davis, James A , Mann, Hashim , Kocoglu, Mehmet H , Voorhees, Peter , Patel, Krina , Sidana, Surbhi , Hansen, Doris K , Sborov, Douglas W , Назаренко, Елена Борисовна , Avilla, Gabriel De, Clark, William, Htut, Myo , Beitinjaneh, Amer , Pereira, Denise L. , Kocoglu, Mehmet H. , Atrash, Shebli , Rossi, Adriana , Richard, Shambavi , Hansen, Doris K.

Blood Advances | August 28, 2025 | Volume: 9 | Issue: 23 | Pages: 6009-6018

10.1182/bloodadvances.2025016966 | PMID 40875887 Get It

Abstract Despite significant therapeutic advances in multiple myeloma (MM), outcomes in patients with plasma cell leukemia (PCL) remain dismal. We conducted a multicenter retrospective analysis of patients with PCL who were treated with the B-cell maturation antigen–directed chimeric antigen receptor T-cell (CAR-T) products idecabtagene vicleucel (ide-cel) and ciltacabtagene autoleucel (cilta-cel). We identified 34 patients; 19 patients received ide-cel and 15 received cilta-cel. With a median follow-up of 11.9 months, the overall median progression-free survival (mPFS) was 9.0 months (95% confidence interval [CI], 4-15) and the median overall survival (mOS) was 13.0 months (95% CI, 8 to not estimable [NE]). The 1-year cumulative incidence of progression or death was 72%, and the 1-year cumulative incidence of death was 47%. Patients who received cilta-cel had a longer mPFS (19.0 months vs 6.0 months) and mOS (>23 months [NE] vs 9.0 months) when compared with those treated with ide-cel. Similarly, the 1-year cumulative incidence of disease progression or death was 37.5% (95% CI, 17.4-68.5) with cilta-cel, whereas all patients treated with ide-cel progressed or died within 12 months of infusion. The rates of hematologic and nonhematologic toxicities were similar between patients treated with cilta-cel and those treated with ide-cel and were consistent with those reported in patients with MM. In this first multicenter study that evaluated patients with PCL who were treated with standard-of-care CAR-T products, we show that CAR-T is safe, feasible, and associated with improved outcomes when compared with historic standards.
Inter-rater Agreement of Richmond Agitation Sedation Scale Assessments in Adult Patients Receiving Mechanical Ventilation in the ICU: A Cross-Sectional Study
Fuchita, Mikita , Pattee, Jack , Le, Dung , To, Teresa , Mucharraz, Carlos , Knippa, Sara, Keyworth, Alexis, Blaine, Caitlin, Le, David, To, Tien, Lindroth, Heidi

Critical Care Explorations | August 28, 2025 | Volume: 7 | Issue: 9 | Pages: e1302

10.1097/cce.0000000000001302 | PMID 40875505 Get It

IMPORTANCE: Accurate and reliable sedation assessment is crucial to improving patient outcomes in the ICU. OBJECTIVE: To evaluate the inter-rater agreement and reliability of Richmond Agitation Sedation Scale (RASS) assessments between bedside nurses and trained investigators in patients receiving mechanical ventilation in the ICU. DESIGN, SETTING, AND PARTICIPANTS: An assessor triad, comprising an ICU nurse providing direct patient care and two trained investigators, simultaneously performed RASS assessments during 79 encounters with 62 unique patients receiving mechanical ventilation at two ICUs at a tertiary care academic hospital in Colorado. A total of 58 nurses participated in the study. MAIN OUTCOMES AND MEASURES: The inter-rater reliability of RASS assessments was evaluated with the intraclass correlation coefficient (ICC) and weighted kappa (κ), and inter-rater agreement was evaluated with percentage agreement and Bland-Altman analysis. RESULTS: Acute respiratory failure (55%) and altered mental status (21%) were the most common reasons for mechanical ventilation. Most patients were receiving one (interquartile range, 0.5–2) continuous sedative during the assessment. The inter-rater reliability of RASS assessments between the nurses and investigators (ICC, 0.728–0.779; weighted κ, 0.62–0.63) was lower than between the two investigators (ICC, 0.891; weighted κ, 0.80). The assessor triad agreed on the same RASS values in only 35% of observations. The average differences in RASS were greater between the investigators and nurses, ranging from –0.658 to –0.544, compared with 0.114 between the two investigators. Compared with the mean of the two investigators, RASS values recorded by nurses were more likely to be higher (52% of observations), indicating a lighter sedation level. In 16% of observations, at least one assessor commented on uncertainty or ambiguity with the RASS. CONCLUSIONS AND RELEVANCE: The inter-rater reliability of RASS assessments was high. However, we observed variations in the degree of agreement by assessor category. Further studies are necessary to explore how factors such as assessor characteristics, ICU environment, and patient conditions influence the inter-rater agreement of the RASS in contemporary ICU practices.
Mild Behavioral Impairment: A Population-Based Study
Vassilaki, Maria , Syrjanen, Jeremy A. , Graff‐Radford, Jonathan , Fields, Julie A. , Knopman, David S., Petersen, Ronald , Geda, Yonas E., Krell-Roesch, Janina, Krell‐Roesch, Janina , Vemuri, Prashanthi , Kremers, Walter K. , Jack, Clifford R. , Lyketsos, Constantine G.

The Journal of Neuropsychiatry and Clinical Neurosciences | August 26, 2025 | Volume: 38 | Issue: 2 | Pages: 134-143

10.1176/appi.neuropsych.20240155 | PMID 41837745 Get It

Expert consensus recommendations on appropriate serological testing for the chief complaint of alopecia
Middleton, Hayden T. , Monahan, Erin, James, Garland, Grippe, Kristen, Link, Jenny L. , Chavez, Magdalena, Sominidi‐Damodaran, Sindhuja , Pham, Van Trọng, Franley, Brittney, O’Brien, Jack C. , Whinery, Sarah Jane, James, Garland, Chavez, Magdalena, Pham, Van, Griffith, Cynthia Faires

Journal of Dermatology for Physician Assistants | August 22, 2025 | Volume: 19 | Issue: 3 | Pages: 6-13

10.1097/jdpa.0000000000000067 Get It

Study Design: A panel of 13 clinicians with experience in dermatology and primary care was assembled to review literature regarding the diagnostic workup of scarring and nonscarring alopecias. The literature for review included clinical trials, meta-analyses, systematic reviews, and previously published guidelines from the last 10 years. After review, the panel drafted a list of consensus statements and then voted on these statements using a modified eDelphi method in order to verify the validity and clarity of each statement. Objective: Our objective, as a panel, was to formulate a clear set of guidelines in the workup of various forms of hair loss by a systematic review of clinical data and literature on the matter. Background: Hair loss is a common and frustrating medical concern for patients worldwide and accounts for significant health care utilization and cost. Moreover, hair loss may present as a symptom of an underlying medical condition requiring attention and treatment. Results: After review, the panel reached a total of 22 consensus statements regarding recommendations for diagnostic testing in the setting of hair loss, 17 of those statements focused on nonscarring alopecias, and 5 statements directed toward scarring alopecias. The statements were evaluated by members of the panel and voted on through a modified eDelphi method and discussed in an open forum. Conclusion: The panel’s review revealed that the diagnostic laboratories and/or scalp biopsy should be considered to varying degrees depending on the type of hair loss at presentation. If there is concern for a scarring process, a biopsy should be strongly considered, while serum laboratory work may be of little benefit. In nonscarring alopecias including alopecia areata, telogen effluvium, and androgenetic alopecia, the literature supports ordering certain serologic tests based on the type of hair loss at presentation.
Development and validation of natural language processing algorithms in the national ENACT network
Wang, Yanshan , Hilsman, Jordan, Li, Chenyu , Kwak, Min Ji , Applegate, Joseph R., Wang, Liwei , Harris, Daniel R. , Corbeau, Alexandria, Osborne, John D. , Kennedy, Richard , Garduno-Rapp, Nelly-Estefanie, Rousseau, Justin F. , Murphy, Tyler J., Sohn, Sunghwan , Peng, Yifan , Pathak, Aman, Xia, Zongqi , Loguercio, Salvatore , Reís, Steven E. , Visweswaran, Shyam, Harris, Daniel , Fan, Jungwei , Kennedy, Richard E , Osborne, John D , Li, Chenyu , Wang, Yanshan , Rousseau, Justin F , Morris, Michele M. , Heider, Paul M. , Fu, Sunyang , Wen, Andrew , Applegate, Joseph R., Bernstam, Elmer V , Liu, Hongfang , Chang, Jack , Henderson, Darren W. , Osborne, John, Yan, Chao , Chen, You , Patel, Mayur Bipin , Murphy, Tyler J., Malin, Bradley , Park, Chan Mi , Fan, Jungwei , Pagali, Sandeep R. , Wu, Yonghui , Visweswaran, Shyam

Journal of Clinical and Translational Science | August 22, 2025 | Volume: 9 | Issue: 1 | Pages: No page available

10.1017/cts.2025.10116 | PMID 40979101 Get It

Abstract Objective: Electronic Health Record (EHR) data are critical for advancing translational research and AI technologies. The ENACT network offers access to structured EHR data across 57 CTSA hubs. However, substantial information is contained in clinical narratives, requiring natural language processing (NLP) for research. The ENACT NLP Working Group was formed to make NLP-derived clinical information accessible and queryable across the network. Methods: We established the ENACT NLP Working Group with 13 sites selected based on criteria including clinical notes access, IT infrastructure, NLP expertise, and institutional support. We divided sites into five focus groups targeting clinical tasks within disease contexts. Each focus group consisted of two development sites and two validation sites. We extended the ENACT ontology to standardize NLP-derived data and conducted multisite evaluations using the Open Health Natural Language Processing (OHNLP) Toolkit. Results: The working group achieved 100% site retention and deployed NLP infrastructure across all sites. We developed and validated NLP algorithms for rare disease phenotyping, social determinants of health, opioid use disorder, sleep phenotyping, and delirium phenotyping. Performance varied across sites (F1 scores 0.53–0.96), highlighting data heterogeneity impacts. We extended the ENACT common data model and ontology to incorporate NLP-derived data while maintaining Shared Health Research Informatics NEtwork (SHRINE) compatibility. Conclusion: This demonstrates feasibility of deploying NLP infrastructure across large, federated networks. The focus group approach proved more practical than general-purpose approaches. Key lessons include the challenge of data heterogeneity and importance of collaborative governance. This work also provides a foundation that other networks can build on to implement NLP capabilities for translational research.
18 F‐FDG PET in detection of primary age‐related tauopathy (PART) – Is there a role? Insights from an imaging‐pathology correlation study
Pham, Nha Trang Thu, Vernon, Cynthia J. , Graff‐Radford, Jonathan, Knopman, David S. , Kantarci, Kejal , Jack, Clifford R. , Ross, Reichard R., Petersen, Ronald C. , Lowe, Val J. , Whitwell, Jennifer L. , Josephs, Keith A. , Jack, Clifford R , Kantarci, Kejal , Lavrova, Anna , Graff‐Radford, Jonathan , Boeve, Bradley F. , Knopman, David S. , Nguyen, Aivi T. , Ross, Reichard R., Dickson, Dennis W.

Alzheimer's & Dementia | August 19, 2025 | Volume: 21 | Issue: 8 | Pages: No page available

10.1002/alz.70568 | PMID 40827317 Get It

Abstract INTRODUCTION Primary age‐related tauopathy (PART) is defined by neurofibrillary tangles (NFTs) with absent‐minimal amyloid beta (Aβ) plaques. Currently, definitive diagnosis of PART occurs with autopsy. This study investigated whether [ 18 F]fluorodeoxyglucose positron emission tomography (FDG‐PET) could detect PART‐related metabolic changes and assessed the impact of common co‐pathologies. METHODS We performed a retrospective cross‐sectional study of 88 individuals (mean age 85.6) with autopsy‐confirmed PART (Braak I to IV; Thal phases 0 to 2) who underwent ante mortem FDG‐PET. Visual ratings and standardized uptake value ratios (SUVRs) were analyzed in medial and lateral temporal lobes, inferior temporal pole, precuneus, and posterior cingulate regions. RESULTS Medial temporal hypometabolism was observed in PART, in the presence of co‐pathologies. Argyrophilic grain disease and TAR DNA‐binding protein 43 were associated with greater hypometabolism ( p < 0.01). Lewy body disease affected parietal regions. DISCUSSION FDG‐PET reveals that PART‐related hypometabolism occurs when co‐pathologies are present, but PART alone appears to have minimal effect on medial temporal lobe hypometabolism. Highlights FDG‐PET hypometabolism worsens with Braak NFT stage. FDG‐PET detects mild lateral temporal lobe hypometabolism in PART alone. PART alone has a minimal effect on medial temporal lobe hypometabolism. Medial temporal hypometabolism is worse in PART with TDP‐43 and especially AGD. The presence of LBD contributes to parietal hypometabolism on FGD‐PET in PART.
Reversing cardiac hypertrophy and heart failure using a cardiac targeting peptide linked to miRNA106a
Lü, Ming , Cai, Siqi , Korolowicz, Kyle , Deng, Claire, Taskintuna, Kaan, Yurko, Ray, Islam, Kazi , Schoonover, Bryn, Lopuszynski, Jack , Wang, Hongkun , Gallicano, G. Ian , Lopuszynski, Jack B, Gallicano, G Ian , Cai, Siqi, Ahern, Gerard P. , Zahid, Maliha

Clinical and Translational Medicine | August 18, 2025 | Volume: 15 | Issue: 8 | Pages: No page available

10.1002/ctm2.70432 | PMID 40820483 Get It

Abstract Background One in five adults aged 40 will develop heart failure (HF) during their lifetime. Risk factors (e.g., hypertension, diabetes mellitus, coronary artery disease, etc.) lead to structural and functional changes in cardiomyocytes, resulting in HF. At the cellular level, these changes consist of mis/over‐expression of genes that regulate cardiac identity (e.g., CamK2δ, PKC, Stat3, etc.). The current paradigm for treating HF is pharmacological or device‐based intervention; however, with few exceptions, the condition worsens with time. We are proposing to implement a change in HF treatment, shifting from a drug‐centric system to a cardiac target‐specific molecular approach that would reverse hypertrophy and adverse remodelling of affected cardiomyocytes. Methods A cardiomyocyte targeting peptide (CTP) was reversibly linked to miRNA106a for delivery to a mouse model of HF. Reversal of morphological, signalling, and physiological HF parameters was measured. Additionally, CTP‐miRNA106a was introduced into a human cardiomyocyte cell line to identify mechanism(s) at play for reversing HF characteristics (e.g., hypertrophy). Results Bio‐distribution studies showed that intravenously injected CTP‐miRNA106 delivered its cargo specifically to the heart within 30 min, followed by clearance of CTP from the heart to the kidneys, and to a lesser extent, the liver by 35 h with persistence of miRNA106a in cardiomyocytes until day 7 (the latest tested time‐point). CTP‐miRNA106a reversed angiotensin2/isoproterenol‐induced hypertrophy in 90% of the treated mice. We also identified two potential HF intracellular signalling pathways/mechanisms (PLCβ1/PKC/IP3 and NF‐κB) targeted by CTP‐miRNA106a that could benefit many pathophysiologies underlying HF, including inflammation. Conclusions CTP‐miRNA106a, a first‐of‐a‐kind cardiac‐specific drug, downregulates genes involved in cardiac hypertrophy and inflammation through the PLCβ1 and CamKIIδ kinase pathways. CTP delivery of miRNA106a cargo is specific to cardiomyocytes both in vitro and in vivo, and once delivered, many HF parameters, including hypertrophy, are reversed. Key points Cardiac Targeting Peptide (CTP) delivers, specifically to the heart, reversibly linked miRNA106a. MiRNA106a targets genes in various pathways known to cause heart failure when they are over/hyper activated returning their expression to normal levels. In vivo analyses using a mouse heart failure model resulted in reversal of heart failure parameters in 19/20 mice.
Affordable Care Act Expansion and Orthopaedic Surgery
Hiredesai, Annika N. , Holle, Alejandro M. , Payne, Cynthia S. , Haglin, Jack M. , Patel, Karan A. , Payne, Camryn S , Haglin, Jack M , Patel, Karan , Holle, Alejandro

JBJS Reviews | August 15, 2025 | Volume: 13 | Issue: 8 | Pages: No page available

10.2106/jbjs.rvw.25.00113 | PMID 40892536 Get It

» Affordable Care Act Medicaid expansion increased orthopaedic surgery access and utilization among Medicaid patients, including for racial and ethnic minorities. » Despite improved coverage, Medicaid patients continue to face significant real-world barriers to orthopaedic care, including lower appointment success and longer wait times compared with privately insured patients. » Evidence on cost and quality impacts remains limited, with early signals of increased reimbursements, higher charges, and some quality improvements postexpansion.