Citations

Mayo Clinic

Showing 10 of 108403 citations.

Abstract B046: Homologous recombination DNA repair dependent survival associations in high-grade serous ovarian carcinoma: an Ovarian Tumor Tissue Analysis consortium study
Weir, Ashley , Talhouk, Aline , Anglesio, Mike S., Garsed, Dale W. , Harris, Holly H., Schildkraut, Joellen M. , Goode, Ellen L. , Huntsman, David G. , Doherty, J.A. , Anglesio, Michael S. , Anglesio, Michael S , Garsed, Dale W , Chiu, Derek S , Anglesio, Mike S., DeFazio, Anna , Harris, Holly H., Berchuck, Andrew , Pharoah, Paul D.P. , Bowtell, David D.L. , Davidson, N. , Köbel, Martin , Ramus, Susan J.

Cancer Research | September 19, 2025 | Volume: 85 | Issue: 18_Supplement | Pages: B046-B046

10.1158/1538-7445.ovarian25-b046 Get It

Abstract Despite homologous recombination (HR) deficiency being an important predictor of survival in high-grade serous ovarian carcinoma (HGSC), its status is rarely considered in large-scale studies of prognostic signatures and biomarkers. We sought to develop a gene expression-based classifier of HR deficient (HRD) HGSCs, suitable for archival FFPE tumor samples, to determine whether established prognostic markers were dependent on HR status. Using 361 HGSCs from The Cancer Genome Atlas (TCGA) where HR status was defined by the genomic gold standard, a HRD score, we trained and tested a ridge penalized logistic regression model. This 218-gene mRNA expression signature was then applied in 6002 HGSCs from the Ovarian Tumor Tissue Analysis (OTTA) consortium to predict the probability of a sample being HRD. In this large cohort of FFPE samples, we sought to understand the relationship between HR and overall survival. Applying Kaplan-Meier analyses and multivariate Cox proportional hazard regression modelling, adjusting for age and stratified by stage and study, we examined the relationship between HR status and the PrOTYPE subtype, SPOT prognostic score and other known prognostic markers in HGSC. Our machine learning model was 84% accurate in a held-out subset of the TCGA (n=73). Of the 6002 OTTA HGSCs, 40.4% were predicted to be HRD. These cases were significantly younger, were enriched for early stage (FIGO I/II) and had improved outcomes when compared to HR proficient (HRP) cases (hazard ratio [HZR]=0.71, 95% confidence interval [CI]=0.66-0.76, p<2x10-16). A linear increase in survival time was observed as the probability of a sample being HRD increased. HGSCs with >75% likelihood of being HRD had a median 5-year survival of 49.3% (95%CI=46.2-52.6%) which was a 17.7% increase from those with <25% likelihood. Both PrOTYPE and SPOT were significantly associated with survival, independent of HR status (p<2x10-16 and p<2x10-16 respectively). Notably the probability of being HRD was negatively correlated with an unfavorable SPOT score (R=-0.32, p<2x10-16), suggesting that SPOT partially captures the survival advantage of HR deficiency. Several individual biomarkers, assessed in 1248 to 2858 cases, showed HR dependent survival associations. HRD HGSCs with high GMNN expression had significantly improved, long-term outcomes (4-10years, HZR=0.39, 95%CI=0.20-0.78, p=0.01), and may be a marker of exceptional survival, while AR negative HRD cases had poorer outcomes, earlier in disease progression (0-4years, HZR=1.43, 95%CI=1.03-1.98, p=0.03). Significantly poorer prognoses were observed in HRP cases expressing PTEN (HZR=1.39, 95%CI=1.04-1.87, p=0.03), and in HRD cases with high expression of MyD88 (HZR=1.21, 95%CI=1.01-1.45, p=0.04). RB1 and FOXJ1 protein expression, and CD8+ T cell abundance were prognostic irrespective of HR status. Our study contributes to understanding the association between HR and HGSC survival in a statistically powered cohort and demonstrates heterogeneity in outcomes through clinically relevant prognostic signatures and biomarkers. Citation Format: Ashley L. Weir, Derek Chiu, Aline Talhouk, Mike S. Anglesio, Dale W. Garsed, Anna DeFazio, Holly H. Harris, Joellen M. Schildkraut, Andrew Berchuck, Ellen L. Goode, Paul D.P. Pharoah, David Huntsman, David Bowtell, Jen A. Doherty, Nadia M. Davidson, Martin Köbel, Susan J. Ramus. Homologous recombination DNA repair dependent survival associations in high-grade serous ovarian carcinoma: an Ovarian Tumor Tissue Analysis consortium study [abstract]. In: Proceedings of the AACR Special Conference in Cancer Research: Advances in Ovarian Cancer Research; 2025 Sep 19-21; Denver, CO. Philadelphia (PA): AACR; Cancer Res 2025;85(18_Suppl):Abstract nr B046.
Abstract B045: Evaluating the effectiveness of opportunistic salpingectomy (OS) for the prevention of epithelial ovarian cancer
Sowamber, Ramlogan , Mei, A.P. van der, Kaur, Paramdeep, McLeod, Julianne, McKay, Emily , Lukey, Alex, Farrell, Rhonda, Garcia, Christine , Goode, Ellen L., Howitt, Brooke E. , Hui, Pei , Kwon, Janice S. , Long-Roche, Kara C., Malpica, Anaís , Miller, Dianne, Oliva, Esther , Paliga, Aleksandra, Pearce, Celeste Leigh , Qiu, Haiyan, Rabban, Joseph T. , Rome, Robert, Steenbeek, Miranda, Stone, Rebecca , Talhouk, Aline , Tischer, Kristin M. , Huntsman, David G. , Mei, Alice J., Kaur, Paramdeep , Bakkum‐Gamez, Jamie N. , Buza, Natália , Cohen, Paul A. , Devins, Kyle M. , Garcia, Christine, Gilks, C. Blake , Hodgson, Anjelica , Huvila, Jutta , Karnezis, Anthony N. , Keyhanian, Kianoosh , Kinloch, Mary A. , Köbel, Martin , Kommoss, Felix , Kushi, Lawrence H. , McAlpine, Jessica N. , Oliva, Esther , Palicelli, Andrea , Parra‐Herran, Carlos , Perera, Sharnel , Piek, Jurgen M.J. , Qiu, Haiyan, Stone, Rebecca, Trabert, Britton , Webb, Penelope M. , Zalcberg, John , Hanley, Gillian E.

Cancer Research | September 19, 2025 | Volume: 85 | Issue: 18_Supplement | Pages: B045-B045

10.1158/1538-7445.ovarian25-b045 Get It

Abstract Introduction: The purpose of this study is to evaluate the effectiveness of opportunistic salpingectomy (OS), a procedure that aims to remove only the fallopian tubes of general population risk women, for the prevention of epithelial ovarian cancer. Currently, the method of prevention for individuals at high risk of ovarian cancer involves a bilateral salpingo-oophorectomy (BSO), a procedure that removes both the fallopian tubes and ovaries. However, this procedure is not recommended for individuals of the general population, who make up about 80% of ovarian cancers, due to negative health implications to the cardiovascular and skeletal systems because of surgically induced menopause. The effectiveness of the OS in preventing ovarian cancers and how the procedure impacts the histotype distribution of ovarian cancers remains unknown. Study Methods: This study uses a population-based approach and a case-based approach to determine the effectiveness of OS and its impact on histotype distribution, respectively. For the population-based analysis, we will search through clinical databases to acquire cases of individuals who have had an OS and a tumor. A control population who have their fallopian tubes in-tact will also be acquired. A cox-proportional hazard analysis will be performed to determine the effectiveness of the procedure. Using pathological records, the case-based ascertainment of tumors from individuals who have had an OS will be selected and reviewed for histotype confirmation. Fallopian tubes of these patients will also be reviewed for precursor lesions. This cohort will be compared to a historical histotype distribution of ovarian cancers. Results: For the population-based approach, we have to date, identified less than five serous ovarian cancers in individuals who have had an OS (n=40, 477). A comparator surgery was used as a control and showed 21 cancers. For the case-based approach, we have partnered with 23 collaborating institutions from around the world to identify tumors in individuals who have had an OS. We have identified 26 epithelial ovarian cancers, with the most lethal gynecological histotype, high grade serous carcinoma (HGSC), accounting for 23.1% of the total proportion of epithelial ovarian cancer cases (n=6/26). This is significantly less than the historical histotype distribution of HGSC, which is 69.3% (Fisher’s exact test, p<0.0001). One HGSC case had a precursor lesion called a serous tubal intraepithelial carcinoma (STIC) while reviewing fallopian tubes of this individual. TP53 mutation analysis on one HGSC tumor sample showed a frameshift mutation in TP53 (c229fs) with the tumor and the corresponding STIC staining negative for p53 protein expression by immunohistochemistry. Conclusion: This evidence demonstrates the effectiveness of opportunistic salpingectomy for the prevention of ovarian cancer and shows a histotype distribution shift, with the most lethal gynecological malignancy having a significant reduction in cases following the procedure. Citation Format: Ramlogan Sowamber, Alice J. Mei, Paramdeep Kaur, Julianne McLeod, Emily McKay, Alex Lukey, Jamie Bakkum-Gamez, Natalia Buza, Paul Cohen, Kyle Devins, Rhonda Farrell, Christine Garcia, Blake Gilks, Ellen Goode, Anjelica Hodgson, Brooke Howitt, Pei Hui, Jutta Huvila, Anthony Karnezis, Kianoosh Keyhanian, Mary Kinloch, Martin Köbel, Felix KF. Kommoss, Lawrence Kushi, Janice S. Kwon, Kara Long-Roche, Anais Malpica, Jessica N. McAlpine, Dianne Miller, Esther Oliva, Andrea Palicelli, Aleksandra Paliga, Carlos Parra-Herran, Celeste Leigh Pearce, Sharnel Perera, Jurgen M. Piek, Haiyan Qiu, Joseph Rabban, Robert Rome, Miranda Steenbeek, Rebecca Stone, Aline Talhouk, Kristin M. Tischer, Britton Trabert, Penelope M. Webb, John R. Zalcberg, Gillian E. Hanley, David G. Huntsman. Evaluating the effectiveness of opportunistic salpingectomy (OS) for the prevention of epithelial ovarian cancer [abstract]. In: Proceedings of the AACR Special Conference in Cancer Research: Advances in Ovarian Cancer Research; 2025 Sep 19-21; Denver, CO. Philadelphia (PA): AACR; Cancer Res 2025;85(18_Suppl):Abstract nr B045.
Abstract A078: Tubal organoid biobanking and multi-omics framework uncovers rare basal peg cells as a source of epithelial stemness and a candidate for high-grade serous ovarian cancer origin
Ritting, Megan L. , Aalam, Syed Mohammed Musheer , Dumbravă, Mihai , Ismail, Wazim Mohammed , Gaspar‐Maia, Alexandre , Sherman, Mark E. , Bakkum‐Gamez, Jamie N. , Kannan, Nagarajan

Cancer Research | September 19, 2025 | Volume: 85 | Issue: 18_Supplement | Pages: A078-A078

10.1158/1538-7445.ovarian25-a078 Get It

Abstract High-grade serous ovarian cancer (HGSOC), the most prevalent and lethal ovarian cancer subtype, is often diagnosed at an advanced stage due to the lack of effective early detection methods. Current evidence suggests that HGSOC originates from the fallopian tube (FT), specifically from secretory epithelial cells in the fimbriated region, based on the detection of early serous lesions and clonal genetic relationships linking them to HGSOC tumors. However, efforts to improve early diagnosis and interception are hindered by an incomplete understanding of HGSOC’s cellular and molecular origin. To address this, we established a diverse, clinically and genetically annotated living FT organoid biobank at the Mayo Clinic, encompassing specimens from over 200 patient donors. Using robust, multi-step protocols, we enriched FT epithelial stem/progenitor cells from tissue samples and Tao brushings, generating bi-lineage differentiated organoids independent of anatomical site (ampulla, fimbria) or laterality (right, left). To gain deeper insight into FT epithelial lineage dynamics, we applied multi-omic modalities—including single-cell RNA sequencing (scRNA-seq), single-nucleus RNA and ATAC sequencing (snMultiome), and bulk RNA-seq—to fresh cells and pooled organoids, integrating findings with public FT datasets to generate the largest known integrated single-cell atlas of normal and high-risk FTs. This enabled the generation and validation of gene expression-derived signatures for secretory and multiciliated lineages, identification of key lineage-defining transcription factors and their regulatory networks, and validation using immunohistochemistry (IHC) data from the Human Protein Atlas. Subcluster-level analysis of epithelial cells revealed transcriptionally distinct populations with unique biological functions, deepening insight into epithelial heterogeneity and FT lineage differentiation. Further, analysis of FT epithelial subclusters identified a rare population with transcriptomic and proteomic association with the mesenchymal-like HGSOC subtype. These cells retained epithelial identity while expressing mesenchymal and ECM-related genes, forming a hybrid phenotype. Spatial profiling via IHC localized them to a rare, basal, peg-like position within the FT epithelium. Developmental analysis showed shared transcriptional features with fetal mesonephric cells, suggesting both developmental plasticity and potential vulnerability to transformation. Pooled organoid scRNA-seq confirmed that they are preserved in culture, indicating they are stably maintained ex-vivo. Together, these findings suggest that this cell cluster represents a rare, multipotent epithelial population with mesenchymal features, offering a candidate cellular origin for the mesenchyme-like subtype of HGSOC. In conclusion, this living FT organoid biobank serves as a powerful, clinically annotated platform for dissecting epithelial lineage hierarchies, identifying rare cell populations, and uncovering mechanisms that may underlie subtype-specific ovarian carcinogenesis. Citation Format: Megan Ritting, Syed Mohammed Musheer Aalam, Mihai Dumbrava, Wazim Mohammed Ismail, Alexandre Gaspar-Maia, Mark Sherman, Jamie Bakkum-Gamez, Nagarajan Kannan. Tubal organoid biobanking and multi-omics framework uncovers rare basal peg cells as a source of epithelial stemness and a candidate for high-grade serous ovarian cancer origin [abstract]. In: Proceedings of the AACR Special Conference in Cancer Research: Advances in Ovarian Cancer Research; 2025 Sep 19-21; Denver, CO. Philadelphia (PA): AACR; Cancer Res 2025;85(18_Suppl):Abstract nr A078.
Abstract A050: Role of drug induced nuclear CTSL (nCTSL) in DNA damage response in cancer- therapeutic implications
Jin, Ling, Zhao, Anya, Staub, Julie , Wu, Xinyan , Hou, Xiaonan , VanBlaricom, Jamison L., Aalam, Syed Mohamed Musheer, Oberg, Ann L. , Weroha, S. John , Shridhar, Viji, Ray, Upasana , Thirusangu, Prabhu , Ray, Upasana , Zhao, Anya, Hou, Xiaonan , Aalam, Syed Mohammed Musheer , Lee, Sun Hee , Kannan, Nagarajan , Chien, Jeremy , Kaufmann, Scott H. , Bakkum‐Gamez, Jamie N. , Shridhar, Viji

Cancer Research | September 19, 2025 | Volume: 85 | Issue: 18_Supplement | Pages: A050-A050

10.1158/1538-7445.ovarian25-a050 Get It

Abstract Introduction: Despite treatment advances, ovarian cancer (OC) remains the deadliest gynecological cancer, with a ∼70% mortality rate. OCs initially respond to platinum chemotherapy but often develop resistance. While PARP inhibitors improve relapse-free survival in responsive cases, they do not extend overall survival. This underscores the need for effective combination therapies beyond BRCA status. The lysosomal protein cathepsin L (CTSL) can traffic to the nucleus, where it can regulate DNA repair and serve as a chromatin modifier. We found that nucleoside analog clofarabine (CLF) induces CTSL nuclear trafficking in OC cells. Here we tested the hypothesis that accumulation nuclear CTSL (nCTSL) is a biomarker of sensitivity to DNA damaging therapy in OCs for improved therapeutic options. Methods: To determine the role of CLF induced nuclear CTSL in DNA damage and its synergy with PARP and CRM1 inhibitors in PARP inhibitor–sensitive and –resistant ovarian cancer (OC) cell lines, ex vivo cultures of ascites-derived patient OC cells (OVA-3D spheroids), primary ovarian tumors, and patient-derived xenograft (PDX) models and validated by colony formation assays. Nuclear CTSL localization was determined in subcellular fractionated lysates by western blots and immunofluorescence cytometry (IFC). Tumor regression was determined in vivo using ex vivo cultures of PDX derived cells. Results: In ovarian cancer (OC) cell lines, CLF monotherapy induced nuclear CTSL (nCTSL) in a subset of models classified as CLF-responsive (CLF-r), sensitizing them to the PARP inhibitors olaparib and rucaparib. In CLF-non-responsive (CLF-nr) models, nCTSL induction and therapeutic synergy were observed only with the CLF+olaparib combination. Synergy was detected in 47% of CLF-r and 24% of CLF-nr patient-derived ascites samples (OVA). Mechanistically, CLF induced nuclear import of CTSL via KPNB1 in CLF-r cells, while this import was triggered by the CLF+olaparib combination in CLF-nr cells. CLF also downregulated the nuclear export protein CRM1 (XPO1) in both groups. Knockdown of CTSL in either CLF-r or CLF-nr cells abrogated sensitivity to the combination. Notably, in 29% of OVA samples classified as CLF-resistant (CLF-Res), CLF failed to suppress CRM1 expression. In these cases, CRM1 inhibition with KPT8602 restored CLF+PARP inhibitor synergy. In vivo, CLF-r and CLF-nr PDX models treated with the combination exhibited increased DNA damage, reduced tumor burden, and extended survival. Conclusion: These findings identify nuclear CTSL (nCTSL) induction as a potential biomarker of response to DNA-damaging therapies. The combination of CLF and olaparib represents a promising strategy to overcome drug resistance in ovarian cancer by promoting CTSL nuclear localization and enhancing DNA damage. Citation Format: Prabhu Thirusangu, Ling Jin, Upasana Ray, Anya Zhao, Julie Staub, Xinyan Wu, Xiaonan Hou, Jamison L. VanBlaricom, Syed Mohamed Musheer Aalam, Sun-Hee Lee, Ann Oberg, Nagarajan Kannan, John Weroha, Jeremy Chien, Scott H. Kaufmann, Jamie N. Bakkum-Gamez, Viji Shridhar. Role of drug induced nuclear CTSL (nCTSL) in DNA damage response in cancer- therapeutic implications [abstract]. In: Proceedings of the AACR Special Conference in Cancer Research: Advances in Ovarian Cancer Research; 2025 Sep 19-21; Denver, CO. Philadelphia (PA): AACR; Cancer Res 2025;85(18_Suppl):Abstract nr A050.
Abstract A044: Application of HRDefine: a biomarker for identifying root causes of homologous recombination deficiency to a phase 3, randomized, placebo-controlled trial of veliparib in front-line treatment of advanced ovarian cancer (VELIA/GOG-3005)
Miller, Persephone, Ladd, Paula D. , Khasnavis, Nithisha , Ochoa, Jennifer, Dillon, Melanie , Ansell, Peter , Aghajanian, Carol , Birrer, Michael J. , Werner, Theresa L. , Le, Linda Van , Rodriguez, Isabel V. , Radke, Marc R. , Katz, Ronit , Miller, Persephone, Dillon, Melanie, Lankes, Heather A. , Fleming, Gini F. , Kaufmann, Scott H. , Leath, Charles A , Moore, Kathleen N. , Coleman, Robert L. , Swisher, Elizabeth M.

Cancer Research | September 19, 2025 | Volume: 85 | Issue: 18_Supplement | Pages: A044-A044

10.1158/1538-7445.ovarian25-a044 Get It

Abstract Purpose: Our goal was to determine if the HRDefine biomarker combining methylation and mutation assessment of key homologous recombination repair genes identifies BRCA wildtype (BRCAwt) ovarian cancer (OC) with outcomes similar to BRCA mutated (BRCAm) OC within the context of a frontline PARP inhibitor trial for advanced ovarian cancer. Methods: We performed an exploratory biomarker analysis of blood and neoplastic samples from the VELIA trial, a phase 3 study evaluating the PARP inhibitor veliparib as frontline maintenance therapy in OC. We developed a highly sensitive droplet digital PCR assay for quantitative BRCA1 and RAD51C promoter methylation and assessed germline/somatic mutations using the BROCA next generation sequencing platform. Cases were grouped into: BRCAm, HRDefine positive (BRCAwt HRDefine+), and HRDefine negative (BRCAwt HRDefine-). Carcinomas were considered HRDefine+ if quantitative BRCA1 or RAD51C promoter methylation was >/= 60% or if a germline or somatic pathogenic variant (PV) was identified in the following non-BRCA HRR repair genes: RAD51C, RAD51D, PALB2, BARD1. For this analysis, the control group included the two study arms with placebo maintenance compared to the investigational arm of veliparib with chemotherapy and continued as maintenance (veliparib throughout group). HRDefine was compared to the Myriad genomic instability score (GIS) used as HRD assessment in the trial. Progression free survival (PFS) was compared using log rank tests. Results: Among 1140 VELIA participants, biomarker analysis could be performed for 487 cases. Of these, 255 (52%) were BRCAm, 60 (12%) were BRCAwt HRDefine+, and 172 (35%) were BRCAwt HRDefine-. BRCAwt HRDefine+ was driven by promoter methylation (57%), germline (40%), or somatic (3%) PVs. Median PFS (months, all arms combined) was 26 months (BRCAm), 27 months (BRCAwt HRDefine+), and 15 months (BRCAwt HRDefine-), with corresponding hazard ratios (HR) of 0.50 (95% CI: 0.39-0.65) and 0.50 (0.34-0.73) versus HRDefine-. All HRDefine+ molecular subgroups were associated with longer PFS, including RAD51C/D mutations (HR 0.44, 0.25-0.77) and promoter methylation (HR 0.60, 0.36-0.97). HRDefine positivity was significantly associated with improved PFS compared to HRDefine-/GIS low (n=60 vs n=111, median PFS 27 versus 14 months, HR 0.44, 0.30-0.65), while the HRDefine- cases with high GIS demonstrated a trend toward an intermediate PFS (n=56, median 18 months, HR 0.67, 0.45-1.01). When compared by treatment arm, median PFS was significantly longer in the veliparib throughout arm compared to control only for the BRCAm group (32 months vs 23 months, HR 0.61, 0.42-0.87), though the analysis was underpowered for the BRCAwt HRDefine+ sub-group (30 months vs 25 months, HR 0.79, 0.4-1.57). Conclusions: HRDefine identifies BRCAwt OC associated with a PFS that is like that of BRCAm cases and may improve stratification for PARP inhibitor therapy beyond current HRD assays. GIS may have some, albeit reduced, prognostic implication that is independent of HRDefine. Citation Format: Isabel V. Rodriguez, Marc Radke, Ronit Katz, Persephone Miller, Paula Ladd, Nithisha Khasnavis, Jennifer Ochoa, Melanie Dillon, Heather Lankes, Peter Ansell, Carol Aghajanian, Gini Fleming, Michael Birrer, Scott Kaufmann, Charles Leath, Kathleen Moore, Theresa Werner, Linda Van Le, Robert L. Coleman, Elizabeth M. Swisher. Application of HRDefine: a biomarker for identifying root causes of homologous recombination deficiency to a phase 3, randomized, placebo-controlled trial of veliparib in front-line treatment of advanced ovarian cancer (VELIA/GOG-3005) [abstract]. In: Proceedings of the AACR Special Conference in Cancer Research: Advances in Ovarian Cancer Research; 2025 Sep 19-21; Denver, CO. Philadelphia (PA): AACR; Cancer Res 2025;85(18_Suppl):Abstract nr A044.
Abstract A024: A PARP-inhibitor-induced early adaptive survival response is tackled through depletion of FRA1 by brigatinib in high-grade serous ovarian carcinoma
Duffield, Julie R. , Hou, Xiaonan , Wilson, Benjamin, Prasad, Anjali , McKeon-Makki, Iman K. , Huehls, Amelia M. , Wu, Xinyan , Couch, Fergus J., Oberg, Ann L. , Karnitz, Larry M., Correia, Cristina , Larson, Melissa C. , Kaufmann, Scott H. , Kanakkanthara, Arun

Cancer Research | September 19, 2025 | Volume: 85 | Issue: 18_Supplement | Pages: A024-A024

10.1158/1538-7445.ovarian25-a024 Get It

Abstract PARP inhibitors (PARPis) are now a standard of care for high-grade serous ovarian cancer (HGSOC), but resistance to these drugs poses a significant concern, necessitating the exploration of novel treatment strategies. Here we investigated the mechanism underlying enhanced PARPi activity in HGSOC cells following treatment with brigatinib—a second-generation anaplastic lymphoma kinase (ALK) inhibitor approved for treating lung cancer. Our previous work has shown that brigatinib is a dual inhibitor of tyrosine kinases FAK and EPHA2 with subsequent additive reduction in downstream PI3K/AKT and MAPK/ERK cell survival signaling. Suppression of these pathways conferred PARPi sensitivity to HGSOC cell lines and patient-derived xenograft (PDX) models, particularly in those with high FAK and EPHA2. To dissect the mechanism linking the FAK/EPHA2 – AKT/ERK pathway to PARPi synergy, we focused on proteomics approaches which revealed that FRA1—an Activator Protein 1 (AP-1) transcription factor known to be downstream of AKT/ERK—and its targets were decreased by brigatinib treatment. In subsequent phosphoproteomics approaches and cell-based confirmatory studies, a phosphorylation crucial for FRA1 stability was found to be disrupted, leading to reduction in total FRA1 protein levels and synergy with PARPis. To explore how FRA1 mediates response to PARPis, immunoblotting analysis revealed that PARPis increased the abundance of FRA1 in HGSOC cells at early timepoints, indicating potential involvement in an adaptive survival response. Follow-up pharmacologic and gene silencing techniques demonstrated that brigatinib still reduces FRA1 in PARPi-treated cells, and FRA1 depletion induces apoptosis when combined with PARPi to levels comparable to brigatinib treatment. Overall, our studies unveil a beneficial ALK-independent effect of brigatinib that may offer new avenues for considering its repurposing as a HGSOC therapy through disruption of a PARPi-induced adaptive survival mechanism. Citation Format: Julie R. Duffield, Xiaonan Hou, Benjamin W. Wilson, Anjali Prasad, Iman K. McKeon-Makki, Amelia M. Huehls, Xinyan Wu, Cristina Correia, Melissa C. Larson, Fergus J. Couch, Ann L. Oberg, Scott H. Kaufmann, Larry M. Karnitz, Arun Kanakkanthara. A PARP-inhibitor-induced early adaptive survival response is tackled through depletion of FRA1 by brigatinib in high-grade serous ovarian carcinoma [abstract]. In: Proceedings of the AACR Special Conference in Cancer Research: Advances in Ovarian Cancer Research; 2025 Sep 19-21; Denver, CO. Philadelphia (PA): AACR; Cancer Res 2025;85(18_Suppl):Abstract nr A024.
Top Ten Tips Palliative Care Clinicians Should Know About the Future of Artificial Intelligence
Patel, Pragat , Patel, Raj, Consolandi, Monica , Collett, David, Nakagawa, Shunichi , Burry, Nicolas, Bezak, Karl B. , Strand, Jake, Kamdar, Mihir , Nelson, Judith E. , Rosa, William E. , Blinderman, Craig D. , Rosa, William E , Patel, Raj, Kuperman, Gilad , Collett, David, Strand, Jake

Journal of Palliative Medicine | September 19, 2025 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.1177/10966218251366117 | PMID 40824746 Get It

Artificial intelligence (AI) is transforming health care and has implications for palliative care (PC) and serious illness communication (SIC). This article integrates interdisciplinary and interprofessional expertise, providing key tips for PC clinicians to best leverage AI-driven tools to enhance PC practices, care efficiency, and patient- and family-centered outcomes. AI-driven tools range from predictive analytics to improve intervention delivery to AI-assisted communication and documentation of goals of care. Beyond these potential benefits are important ethical, logistical, and equity considerations that must be carefully addressed.
An Unbiased Cell‐Culture Selection Yields DNA Aptamers as Novel Senescent Cell‐Specific Reagents
Pearson, Keenan , Jachim, Sarah K. , Wilbanks, Brandon , Prieto, Luis I. , Dugan, Maria , LeBrasseur, Nathan K. , Maher, L. James , Pearson, Keenan S , Doherty, Caroline D, Wilbanks, Brandon A, LeBrasseur, Nathan K , III, Louis James Maher , Wilbanks, Brandon A , Doherty, Caroline Lloyd , Baker, Darren J. , Doherty, Caroline

Aging Cell | September 19, 2025 | Volume: 24 | Issue: 11 | Pages: No page available

10.1111/acel.70245 | PMID 40970817 Get It

ABSTRACT Cellular senescence is an irreversible form of cell‐cycle arrest caused by excessive stress or damage. While various biomarkers of cellular senescence have been proposed, there are currently no universal, stand‐alone indicators of this condition. The field largely relies on the combined detection of multiple biomarkers to differentiate senescent cells from non‐senescent cells. Here we introduce a new approach: unbiased cell culture selections to identify senescent cell‐specific folded DNA aptamers from vast libraries of trillions of random 80‐mer DNAs. Senescent mouse adult fibroblasts and their non‐senescent counterparts were employed for selection. We demonstrate aptamer specificity for senescent mouse cells in culture, identify a form of fibronectin as the molecular target of two selected aptamers, show increased aptamer staining in naturally aged mouse tissues, and demonstrate decreased aptamer staining when p16 expressing cells are removed in a transgenic INK‐ATTAC mouse model. This work demonstrates the value of unbiased cell‐based selections to identify new senescence‐specific DNA reagents.
Clinical and microbiologic features of Achromobacter species: a 10-year, multicenter experience
Bayless, David , Dumais, Mitchell , McHugh, Jack , Ranganath, Nischal , Chesdachai, Supavit , Saleh, Omar M. Abu, Bayless, David R , Dumais, Mitchell G , McHugh, Jack , Chesdachai, Supavit , Abu Saleh, Omar M, Ranganath, Nischal , Fida, Madiha , Saleh, Omar Abu

Journal of Clinical Microbiology | September 19, 2025 | Volume: 63 | Issue: 10 | Pages: No page available

10.1128/jcm.00724-25 | PMID 40970774 Get It

ABSTRACT Achromobacter species are Gram-negative bacilli that predominantly affect individuals with cystic fibrosis or those with immunocompromising conditions. Clinical and microbiologic data on Achromobacter species are limited due to the rarity of these organisms and challenges with species-level identification. We conducted a 10-year retrospective analysis (1 January 2013 to 14 March 2023) of all bloodstream and non-bloodstream Achromobacter isolates identified at three tertiary-care Mayo Clinic locations (Minnesota, Arizona, and Florida). Additionally, we examined clinical characteristics of adult patients with Achromobacter bloodstream isolates. A total of 1,598 Achromobacter isolates, encompassing 1,545 non-bloodstream isolates and 53 bloodstream isolates, were identified. The most frequently identified species was Achromobacter xylosoxidans , though species-level identification was not possible for many isolates. Among adult patients with Achromobacter bloodstream infection, the mean age was 58.3 years (standard deviation ± 16.7), 73.1% had a central venous catheter, and 59.6% were immunocompromised. All-cause mortality was 10.2% at 30 days and 18.4% at 90 days. Bloodstream isolates exhibited greater than 90% susceptibility to meropenem, piperacillin-tazobactam, and trimethoprim-sulfamethoxazole. The respiratory tract was the most common source of non-bloodstream isolates (57.5%). Non-bloodstream isolates showed high susceptibility to imipenem (94.6%), piperacillin-tazobactam (92.8%), trimethoprim-sulfamethoxazole (92.1%), and meropenem (87.5%) while demonstrating significant resistance to fluoroquinolones and aminoglycosides. Our findings support the use of piperacillin-tazobactam, carbapenems, or trimethoprim-sulfamethoxazole as initial therapy for Achromobacter infections. Further research is needed to better define the clinical and microbiologic characteristics of Achromobacter infections. IMPORTANCE Achromobacter is a rare but important genus of bacteria that tends to cause infection in those with cystic fibrosis, recurrent healthcare exposures, and/or an immunocompromising condition. There is limited data on the clinical profile of Achromobacter infections as well as optimal antibiotic selection for affected patients. We conducted a retrospective study to improve understanding of the microbiologic and clinical characteristics of Achromobacter . Our study consists of a 10-year survey of all Achromobacter isolates processed by three Mayo Clinic tertiary-care centers in Minnesota, Florida, and Arizona from 2013 to 2023. We report multiple findings, including the clinical characteristics of patients with Achromobacter bloodstream infection, the number of different Achromobacter species identified, and the sources of isolates not obtained from blood cultures. We additionally present antimicrobial susceptibility results for Achromobacter isolates. Our study provides guidance to clinicians treating Achromobacter infections and, it is hoped, will facilitate ongoing study of Achromobacter .
Predictors of Intracranial Aneurysm Residual Filling After Treatment With Flow Diversion at Early Follow-up: A Multicenter Experience of 2277 Patients
Burks, Joshua D. , Abdelsalam, Ahmed , Silva, Michael A. , Jabbour, Pascal, Kasab, Sami Al , Kan, Peter , Chalouhi, Nohra , Eatz, Tiffany , Wolfe, Stacey Q , Spiotta, Alejandro M , Yavagal, Dileep R. , Peterson, Eric C. , Wu, Eva M. , Lanzino, Giuseppe, Brinjikji, Waleed , El‐Ghanem, Mohammad , Starke, Robert M. , Wolfe, Stacey Quintero , Luther, Evan , Christopher, Kara M , Jabbour, Pascal, Levitt, Michael R. , Sanikommu, Sai , Abla, Adib A. , Arthur, Adam Stephen , Osbun, Joshua W , Park, Min S. , Sweid, Ahmad , Fargen, Kyle M , Peterson, Eric C., Schirmer, Clemens M. , Almallouhi, Eyad , Lanzino, Giuseppe

Neurosurgery | September 19, 2025 | Volume: 98 | Issue: 1 | Pages: 239-245

10.1227/neu.0000000000003747 | PMID 40970720 Get It

BACKGROUND AND OBJECTIVES: Flow-diverting stents (FDSs) have improved treatment options for intracranial aneurysms. Although FDS have proven successful in treating aneurysms that would previously have required complex microsurgical or endovascular repairs, treatment failures remain a concern. In this multicenter study, we aim to analyze the predictors of residual aneurysmal filling at early angiographic follow-up. METHODS: A retrospective analysis of a prospectively maintained neuroendovascular database at 14 high-volume US centers was conducted for all patients who underwent FDS placement for intracranial aneurysms between 2011 and 2019. Aneurysms were graded on the O'Kelly-Marotta scale (OKM). RESULTS: A total of 2277 patients underwent FDS embolization for intracranial aneurysms during the study period. The patient's mean age was 55 (SD ± 13.5) years, and 82% were female. The median maximal aneurysm diameter was 6.7 mm (IQR 4.10-11 mm). Complete aneurysm obliteration (OKM grade 4) occurred in 1109 patients (68%), and 146 (9%) were OKM grade 3, 188 (12%) were OKM grade 2, and 174 (11%) were OKM grade 1. In the adjusted multivariate analysis, individuals in the 65-74 years and 75+ years age groups had significantly increased risk of residual aneurysm filling at 6-month follow-up compared with the 18-44 years age group (odds ratio [OR] 1.92 (95% CI: 1.33-2.78) and 2.92 (95% CI: 1.79-4.77), respectively). Aneurysms arising from the superior cerebellar artery, the basilar artery, and the carotid terminus were more likely to have a residual filling (OR 12.6, 95% CI: 1.39–14.7; OR 4.27, 95% CI: 1.39–14.7; OR 3.16, 95% CI: 1.24–8.06, respectively). CONCLUSION: As the utilization of FDS for intracranial aneurysms becomes more widespread, the efficacy of aneurysm obliteration needs to be assessed. Our results indicate that several patient-dependent factors, such as age, aneurysm location, and size, predict the likelihood of residual aneurysm filling 6 months post-treatment.