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489 citation(s) found for "Xi, Xin".

EBF1 Activity Controls Leukemia Sensitivity to Inotuzumab Ozogamicin
Escherich, Carolin S. , Li, Yizhen , Walker, Megan, Huang, Xin , Paietta, Elisabeth , Konopleva, Marina , Litzow, Mark R. , Li, Zhenhua , Barnett, Kelly R. , Yang, Wenjian , Yu, Jiyang , Stock, Wendy , Kornblau, Steven M. , Inaba, Hiroto , Pui, Ching-Hon , Loh, Mignon L. , Savic, Daniel , Yang, Jun J.J.

Blood | December 5, 2024 | Volume: 144 | Issue: Supplement 1 | Pages: 830-830

10.1182/blood-2024-198800 Get It

Background: Inotuzumab Ozogamicin (InO) is an antibody-cytotoxin conjugate with high activity in B-cell acute lymphoblastic leukemia (B-ALL). InO targets the B-cell surface protein CD22, which is expressed in most B-ALL cases, albeit with great variability in expression levels. Emerging evidence suggest that this variation is associated with the stage of leukemia differentiation arrest [PMID: 21348573]. However, the exact relationship between CD22 expression and leukemia sensitivity to InO, particularly in the context of leukemia developmental state, remains unclear. Furthermore, our understanding of the molecular mechanisms regulating CD22 transcription in B-ALL is still incomplete. Methods: To comprehensively investigate the genomic basis of variability in leukemia CD22 expression and thus B-ALL sensitivity to InO, we performed a multi-omic characterization of 196 primary human B-ALL samples, using whole transcriptome sequencing (RNAseq), assay for transposase-accessible chromatin with sequencing (ATAC-seq), coupled with ex vivo profiling of InO sensitivity. Additionally, genomic editing studies were performed in Nalm6 and REH B-ALL cell lines, and patient derived xenograft (PDX) models were used for in vitro and in vivo validations. Results: Applying digital cytometry to leukemia bulk RNAseq data to infer the B-ALL developmental state, we found that blast cells with early Pre-pro-B-like signature had low levels of CD22 expression and were resistant to InO. As B-cell differentiation is controlled by stage-specific transcription factors (TFs), we performed a targeted CRISPR library screen of 1,639 TF genes and identified EBF1 as a key activator of CD22 expression (FDR=7.1x10-4). In primary B-ALL samples, EBF1 expression was significantly correlated with CD22 expression (R=0.69, P<0.0001) and leukemia response to InO (measured as LC50, R=-0.42, P<0.0001). In addition, TF footprint analysis of leukemia ATAC-seq data identified EBF1 as the most differentially activated TF comparing InO-sensitive and -resistant B-ALL cases (P=8x10-174). Blocking the EBF1 binding sites within the CD22 promoter by CRISPR interference resulted in a 50-fold and 49-fold decrease in cell surface CD22 expression, and a 22-fold and 25.7-fold increase in InO LC50 for Nalm6 and REH, respectively, confirming the direct impact of EBF1 on CD22 transcription and InO sensitivity. Because BCR::ABL1-positive ALL showed the greatest variability in InO sensitivity among all B-ALL subtypes, we further investigate the role of the EBF1/CD22 axis on InO sensitivity within this subtype. Unsupervised clustering of gene expression profiles revealed two distinct groups, namely BCR::ABL1 ALL with multilineage (BCR::ABL1-M) or lymphoid only (BCR::ABL1-L) involvement [PMID: 38153913]. Compared to BCR::ABL1-L, BCR::ABL1-M displayed markedly reduced CD22 expression (P=8.3×10-11) and resistance to InO (P=1.9×10-4), likely due to the lower expression and frequent somatic alteration of EBF1. Finally, we established PDX models for representative cases of BCR::ABL1-M and BCR::ABL1-L. Strikingly, InO treatment did not affect leukemia progression in the BCR::ABL1-M PDX model, whereas the BCR::ABL1-L PDX model achieved complete remission and has remained leukemia free to date. Conclusion: Collectively, these data demonstrate the direct impact of EBF1 on CD22 expression during B-cell development, and explain the heterogeneity of InO sensitivity, even within the same molecular B-ALL subtype.
Long-Term Remission and Survival in Patients with Rituximab-Refractory/Relapsed B-Cell Non-Hodgkin Lymphoma after Treatment with U16 (CD20 CAR-T cells)
Tan, Jingwen , Liu, Rui , Kang, Liqing , Zhu, Hongjia , Wang, Erhua, Li, Ying , He, Rong , Lou, Xiaoyan, Wang, Wei , Li, Minghao , Gu, Hongfei , Lei, Yu , Cheng, Qian , Zhang, Yi , Zhang, Jian , Xiao, Han , Xu, Nan , Zhou, Yu , Li, Xin

Blood | December 5, 2024 | Volume: 144 | Issue: Supplement 1 | Pages: 3447-3447

10.1182/blood-2024-200516 Get It

Background : Rituximab is a monoclonal antibody that targets CD20 and can significantly improve the prognosis of patients with CD20-positive B-cell non-Hodgkin lymphoma (B-NHL). Nonetheless, a significant number of patients experience disease progression or relapse post-rituximab therapy. CD19-chimeric antigen receptor (CAR) T cells have demonstrated remarkable efficacy in B-NHL treatment. However, few studies have focused on the efficacy and safety of CD20 CAR-T cells in rituximab-refractory/relapsed (R/R) B-NHL patients, particularly those treated with rituximab for a short time. Here, we conducted a prospective study, aimed to assess the long-term remission and survival in patients with rituximab-R/R B-NHL after treatment with U16 (CD20 CAR-T cells). Methods : This first-in-human study is an open-label, single center investigator-initiated trial (IIT) to determine the safety and efficacy of CD20 CAR-T in R/R B-NHL after previous rituximab treatment failure (no. ChiCTR2000036350). CD20 CAR-T was administered at a target dose of 1.0×107 CAR-T cells/kg after a 3-day conditioning chemotherapy with fludarabine and cyclophosphamide. The primary objective was to assess the safety and tolerability of CD20 CAR-T. Cytokine release syndrome (CRS) and immune effector cell-associated neurotoxicity syndrome (ICANS) were graded according to ASTCT 2019 criteria. The secondary objectives were to evaluate efficacy and pharmacokinetics (PK). Response was assessed per Lugano 2014 criteria. Results:A total of 16 patients with R/R B-NHL were enrolled.The median age was 49 years (range, 28-66). Median number of prior lines of therapy was 3 (range, 2-5). All patients had received rituximab therapy; of these, 9 had done so within the 3 months before CAR-T infusion. CRS occurred in all patients, with 11 patients (68.75%) experiencing grade 1 or 2 CRS and 5 patients (31.25%) experiencing grade 3 CRS. No patient developed grade 4 CRS , and only one patient had ICANS.The most common grade 3 or higher adverse events observed after infusion included leukopenia (93.3%), anemia (40%) and thrombocytopenia (60%). An overall response rate of 100% was observed among enrolled patients, with 11 patients (68.75%) achieving complete remission(CR) and 5 patients (32.25%) achieving partial remission(PR) within 3 months. The median follow-up time was 11.7 months(range 0.69-47.47). The median overall survival was not reached, and the median progression-free survival was 14.5 months. 9 patients remained CR or PR for 12 months, with 7 of them continuing in CR for up to 24 months. The pharmacokinetics of CD20 CAR-T cells were assessed using quantitative PCR to determine the expansion and persistence ability. Peak CAR amplification were detected 7-14 days after infusin. Patients 1, 2 and 4 achieved long-term remission, and persistent positive CAR-T cell copy numbers were detected for 15 months, 30 months and 26 months, respectively. However, patients 7, 8 and 12 relapsed within 3 months, and the CAR-T cell copies of all three patients were reduced to fewer than 1×103 copies/μg of DNA within 3 months. The qPCR results indicated that the maintenance of efficacy was closely related to the persistence of CAR-T cells. Notably, patients who received rituximab less than 3 months before CAR-T infusion had a poorer prognosis, with higher relapse rates (77.8% vs. 28.6%) and shorter progression-free survival, regardless of the degree of response. Conclusion : Long-term follow-up demonstrated that CD20 CAR-T therapy can produce a deep and durable response with a favorable safety profile in patients with rituximab-refractory/relapsed B-NHL. Notably, patients who had received rituximab within 3 months had a poorer prognosis.
Targeted Next Generation Sequencing Is Comparable with Metagenomic Next Generation Sequencing in Hematological Malignancies with Suspected Pneumonia for Pathogenic Microorganism Detection
Tang, Yishu, Yulian, Xiao, He, Rong , Li, Xin

Blood | December 5, 2024 | Volume: 144 | Issue: Supplement 1 | Pages: 5993-5993

10.1182/blood-2024-207266 Get It

Pulmonary infections are commonly observed in hematologic malignancy (HM) patients.For HM patients with low immune functionality and high susceptibility to pulmonary infections, timely identification of pathogens and administration of correct medications can greatly improve patient outcomes[1, 2].The next generation sequencing can achieve an early diagnosis of respiratory infection.To date, the systematic evaluation of the clinical use of mNGS and tNGS for pneumonia in HM patients has been insufficient. A retrospective analysis was conducted on HM patients with suspected pneumonia admitted to the Hematology Department of The Third Xiangya Hospital between April 2019 and April 2024.A total of 234 patients were identified for analysis,including 126 patients used mNGS to detect bronchoalveolar lavage fluid(BALF)and 108 patients used mNGS to detect BALF.The purpose was to compare the diagnostic efficacy of mNGS and tNGS in pulmonary infection pathogens. The overall microbial detection rate of mNGS and tNGS were 88.9% (112/126) and 93.5% (101/108), respectively. And there was no significant difference between them ( p = 0.217).Viruses,bacteria and fungi accounted for 42.2%(117/277), 33.9% (94/277) and 23.8% (66/277) among the microorganisms detected in mNGS, respectively. Meanwhile,Viruses,bacteria and fungi accounted for 61.0%(147/241), 21.2% (51/241) and 17.8% (43/241) among the microorganisms detected in mNGS.In order to compare the diagnostic and concordance between mNGS and tNGS.We used the final clinical diagnosis as the “gold standard”.The sensitivity, specificity, positive predictive value and accuracy of mNGS were 92.7%,37.5%,91.1% and 85.7%, respectively, compared with 97.9%,45.5%,94.1% and 92.6% for tNGS.Further more,we compared the clinical impact of mNGS and tNGS on antibiotic usage.The mNGS results led to adjustments in antibiotic usage for 63 out of the 126 patients(56.3%). Following these alterations, 56 patients (88.9%) reported significant improvements.In tNGS,there are 59 out of the 108 patients(58.4%%) adjustmented in antibiotic usage and 56 patients(94.9%) reported significant improvements.The total death of mNGS and tNGS were 9.8%(11/126) and 4.0%(4/108), respectively. There were no significant differences between the two groups (P >0.05).Compared to the microbial range detected by tNGS, mNGS detected an additional 14 pathogenic microorganisms, in which had a very low proportion of pathogenic microorganisms (3.6%,4/112), which did not have any adverse effects on the clinical outcomes of patients. Collectively,we found that tNGS is comparable with mNGS in HM patients with suspected pneumonia for pathogenic microorganism detection.What's more,the ability of tNGS in guiding treatment was consistent with those of mNGS.
High Prevalence of Concomitant Autoimmunity in Patients with Rosai-Dorfman Disease
Sen, Mitali , Ruan, Gordon , Reynolds, Samuel , Ali, Haadi, Yang, Xi , Abeykoon, Jithma P. , Salama, Hind , Ahmed, Asra, Morlote, Diana M. , Ravindran, Aishwarya , Shea, Lauren , Koster, Matthew J. , Cao, Xin-Xin , Go, Ronald S. , Goyal, Gaurav

Blood | December 5, 2024 | Volume: 144 | Issue: Supplement 1 | Pages: 3910-3910

10.1182/blood-2024-201817 Get It

Introduction: Autoimmunity in Rosai-Dorfman disease (RDD) has been reported in several case reports and small case series. The recent consensus RDD guidelines even classify “immune-related RDD” as a distinct entity, but little is known about the prevalence and patterns of autoimmune conditions in this rare disease. We conducted this study to evaluate a large cohort of patients with RDD for concomitant autoimmunity. Methods: We conducted a retrospective review of cases diagnosed with RDD from five referral centers globally. Data pertaining to autoimmunity were captured in terms of serology and a clinical diagnosis of autoimmune disease (AID) and compared to previously reported prevalence of AID and autoimmunity in the general population and in patients with other lymphomas. Results: We included 157 patients diagnosed with RDD from 2003-2023. Median age at the time of RDD diagnosis was 48 years, IQR 35.5-60. This included 103 females (65.6%) and 54 male (34.4%). Racial distribution included 54 Black (34.4%), 52 White (33.1%), 40 Asian (25.5%), 7 Middle Eastern (4.5%) and 4 other (2.5%). 83 patients had multi-systemic disease (52.8%) and 74 had single organ involvement (47.2%). Most common organs involved were skin/subcutaneous tissue (78, 49.7%), lymph nodes (63, 40.1%), bone (54, 34.2%). Tissue next generation sequencing data was available for 100 patients (63.7 %) and showed KRAS mutation (19, 19 %), MAP2K/MEK (13, 13%), other mutations (27, 27 %), and no mutations (41, 41%). Mean ESR at diagnosis of RDD was 28.42 mm/Hr and mean CRP was 19.5 mg/L. In our cohort, 28 patients (17.8%) were diagnosed with an AID. 19 (67.8%) were diagnosed with the AID prior to the diagnosis of RDD. Most common AID was systemic lupus erythematosus (6, 21.4%), rheumatoid arthritis (5, 17.8%), autoimmune hemolytic anemia (3, 10.7%), polymyalgia rheumatica (2, 7.1%). AID was more common in female vs male (64.3% vs 35.7%, p 0.8) and were more commonly seen in patients with multisystem compared to single organ RDD (60.7% vs 39.3%, p 0.3). Mean ESR and CRP at the time of RDD diagnosis in patients with AID were 40.63 mm/Hr and 37.04 mg/L respectively. Autoimmune antibodies were tested in 90 patients (57.3%), of which 43 (47.8%) were positive for atleast one autoantibody which included 15 patients (16.7%) with AID and a positive autoantibody and 6 (6.6%) with AID and negative antibodies (p 0.01). Most common antibodies were ANA (29/83, 34.9%), 42.3% with a titer higher than 1:160. Other antibodies include RF (10/60, 16.67%), anti-neutrophilic cytoplasmic antibody (3/19, 15.8%), double stranded DNA (6/56, 10.7%). Positive Antibodies were more common in female compared to male patients (72% vs 23%, p 0.04) and in patients from China compared to North America (45.7% vs 22.6%, p 0.007). Autoantibody positivity was common in multi-system vs single organ RDD (53.5% vs 46.5%, p 0.9). Mean ESR and CRP in this group of patients were 34.54 mm/Hr and 23.93 mg/L respectively. Median duration of follow up for our cohort was 32 months (IQR 14-65). Five-year survival was 93.4%. There were a total 8 deaths reported in the cohort, none of which were in patients with underlying AID. In a multivariable analysis, AID was associated with race (odds ratio [OR] for Middle Eastern compared with Chinese, OR 7, p=0.02) but other factors like organ involvement, mutational status, sex and age at diagnosis were not significant. Conclusions: Our study reveals a high prevalence of autoimmunity in RDD, both in terms of AID (17.8 %) and positive autoantibodies (47.8 %), which is much higher than the general population rates of approximately 3% and 16% respectively, and higher than patients with non-Hodgkin lymphoma, 7.6% and 39%, respectively. There was a trend toward association of AID with multisystem RDD and among individuals from North America and Middle East compared to China, although auto-antibody positivity was more common in Chinese patients. Mean ESR and CRP at the time of diagnosis of RDD was higher in the patients who had AID. We did not find any statistically significant association between AID and autoantibody positivity with the underlying driver mutation. Nearly half of the patients with RDD who also had AID did not have a positive autoantibody, thereby implying the need of clinical evaluation for rheumatological symptoms rather than empiric serological testing. Overall, this study also highlights the need to explore the biological link between RDD and autoimmunity.
STK39-mediated amplification of γ-H2A.X promotes homologous recombination and contributes to PARP inhibitor resistance
Xu, Yi , Li, Changying , Yin, Huan , Nowsheen, Somaira , Liu, Xin , Chen, Lifeng, Lou, Zhenkun , Yi, Junlin , Li, Changying , Lou, Zhenkun , Xu, Xin , Kang, Wenjuan, Chen, Lifeng, Deng, Min

Nucleic Acids Research | November 26, 2024 | Volume: 52 | Issue: 22 | Pages: 13881-13895

10.1093/nar/gkae1099 | PMID 39588777 Get It

Abstract The phosphorylation of histone H2A.X into γH2A.X is a crucial early event in the DNA damage response, marking DNA damage sites and initiating repair processes. While ATM kinase is traditionally recognized as the primary mediator of H2A.X phosphorylation, our study identifies serine/threonine kinase 39 (STK39) as a novel enhancer of this critical signaling pathway. We demonstrate that after DNA damage, STK39 undergoes phosphorylation by the ATM kinase, facilitating its interaction with the Mre11-Rad50-Nbs1 complex and subsequent recruitment to chromatin. This recruitment enables STK39 to further phosphorylate H2A.X, thus amplifying γH2A.X production and promoting homologous recombination repair. Notably, we observe a significant upregulation of STK39 in pancreatic adenocarcinoma (PAAD) tissues, correlating with heightened resistance to PARPi therapy. Furthermore, we demonstrate the synergistic efficacy of combining STK39 inhibition with PARP inhibitors in suppressing and reversing PAAD growth. This study not only provides new insights into the molecular dynamics of H2A.X phosphorylation but also highlights the therapeutic potential of targeting STK39 to enhance PARPi sensitivity in PAAD (created with BioRender).
Pig-to-human lung xenotransplantation in a brain-dead human recipient
Liu, Xiaoyou , Peng, Guilin, Shi, Jiang , Ju, Chunrong, He, Ping , Liu, Xiaoqing , Zhang, Zuopen, Chen, Chuanbao, Pan, Dengke, Yang, Zifeng , Guan, Wenda, 陈, 中华克劳斯, Liu, Menyang, Liang, Hengrui , Zhao, Yi , Huang, Weiqing , Rucker, A. Justin , Xu, Xin , He, Jianxing , Yang, Chao , Liu, Hui, Liu, Xiaoqing, Zhang, Zuopeng , Pan, Dengke , Yang, Zifeng , Guang, Wenda, Li, Hongtao , Chen, Zhonghua, Liang, Hengrui , Jeon, Kyeongman , Chen-Yoshikawa, Toyofumi Fengshi , Lal, Amos, Zhang, Kang , Zhang, Kang , Liu, Xiaoyou , Xu, Xin

No container title available | November 10, 2024 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.21203/rs.3.rs-5155123/v1 Get It

Abstract This study reports the first pig-to-human lung xenotransplantation using a six gene-edited pig lung. A left lung from a gene-edited Chinese Bama Xiang pig was transplanted into a 39-year-old brain-dead human recipient. The xenograft maintained viability and functionality for 216 hours without signs of hyperacute rejection. Postoperatively, severe edema resembling primary graft dysfunction (PGD) was observed, potentially due to ischemia-reperfusion injury. Antibody-mediated rejection appeared to contribute to xenograft damage on postoperative days 3 and 6, with partial recovery by day 9 under the current immunosuppressive regimen. This pioneering study suggests that genetically modified pig lungs could potentially be used for future clinical applications in xenotransplantation.
nnMobileNet: Rethinking CNN for Retinopathy Research
Zhu, Wenhui , Chen, Xiwen , Leporé, Natasha , Dumitrascu, Oana M. , Qiu, Peijie , Li, Xin , Wang, Yalin

2024 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW) | September 27, 2024 | Volume: No volume available | Issue: No issue available | Pages: 2285-2294

10.1109/cvprw63382.2024.00234 | PMID 40356800 Get It

Sexual Dimorphism in the Relationships Between Intramyocardial Fat, Myocardial Fibrosis, and Exercise Intolerance in Heart Failure with Preserved Ejection Fraction
Dong, Xin , Koepp, Katlyn E. , Sorimachi, Hidemi, Araoz, Philip A. , Delgado, Victoria , Bax, Jeroen J., Araoz, Philip, Delgado, Victoria , Ng, Arnold C.T. , Obokata, Masaru , Galloway, Graham J. , Borlaug, Barry A.

European Journal of Heart Failure | September 24, 2024 | Volume: 27 | Issue: 7 | Pages: 1359-1361

10.1002/ejhf.3473 | PMID 39315640 Get It

The Future of Healthcare Delivery: Three Insights from Supply Chain Management
Francis, James R. , Bagchi, Ann D. , Melamed, Benjamin , Hill, Diane, Baveja, Alok , Ding, Xin David

Management and Business Review | August 21, 2024 | Volume: 3 | Issue: 4 | Pages: 28-36

10.1177/2694105820230304007 Get It

The COVID-19 pandemic dramatically exposed the vulnerabilities of supply chains in the healthcare sector. James R. Francis, Alok Baveja, Xin (David) Ding, Ann D. Bagchi, Benjamin Melamed, and Diane Hill conducted an in-depth study of how Mayo Clinic addressed these challenges and present three strategies for the future of the healthcare industry.
Empowering Alzheimer's Caregivers with Conversational AI: A Novel Approach for Enhanced Communication and Personalized Support
Zaman, Kimia Tuz , Li, Juan , Xie, Bo, Hasan, Wordh Ul , Wang, Xin , Xie, Bo , Tao, Cui

No container title available | August 10, 2024 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.21203/rs.3.rs-4690070/v1 Get It

Abstract Alzheimer's disease and related dementias (ADRD) significantly impact patients and their caregivers, causing emotional stress, lack of training, and financial strain for the latter. Addressing the need for effective support, this research developed and validated ADQueryAid, a conversational AI system designed to empower ADRD caregivers. Built on a Large Language Model (LLM) and enriched with authoritative ADRD information through a knowledge graph, ADQueryAid uses Retrieval Augmented Generation (RAG) techniques to retrieve relevant information from both structured and unstructured data sources. Prompt engineering and conversation policies ensure the delivery of informative, empathetic, and personalized responses. Evaluated via a Blind Within-Subjects Design study with 20 ADRD caregivers interacting with both ADQueryAid and a baseline model (ChatGPT 3.5) in fictional caregiving scenarios, the system's usability was assessed using the Chatbot Usability Questionnaire (CUQ). Results showed ADQueryAid significantly outperformed the baseline model across all CUQ metrics, offering more contextually relevant information, accurate guidance, and emotional support, which enhanced the caregiving experience. This study highlights the potential of AI to support ADRD caregivers by providing personalized assistance, with future research focusing on expanding the knowledge base, refining conversational strategies, and exploring the long-term impact on caregiver well-being and patient outcomes.