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Gupta, Sounak

https://orcid.org/0000-0001-5163-6955

Mayo Clinic

Mayo Clinic

Citations 50

Beyond Binary PTEN Loss: Integrating Genomics, Long-Term Outcomes, and AI-Assisted Digital Pathology to Define Actionable PTEN Deficiency in Prostate Cancer.
Zarka, Jabra, Pessoa, Rodrigo Rodrigues , Gupta, Sounak , Chen, Eric, Greipp, Patricia, Orme, Jacob J., Karnes, R. Jeffrey, Cheville, John C. , Heath, Elisabeth, Zarka, Jabra , Greipp, Patricia T. , Childs, Daniel S. , Orme, Jacob J. , Karnes, R. Jeffrey

International Journal of Cancer Care and Delivery | September 10, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.53876/001a.129758 Get It

A novel classification of testicular sex cord‐stromal tumours from the Testicular Sex Cord‐Stromal Tumour ( TESST ) group: a collaboration of the Genitourinary Pathology Society (
Acosta, Andrés , Bremmer, Felix , Jc, Cheville, Colecchia, Maurizio , Comperat, Eva, Cornejo, Kristine, Baydar, Dilek E., Gill, A J, Gonzalez‐Peramato, Maria del Pilar, Gupta, Sounak , Hirsch, Michelle S. , Idrees, Muhammad T., Maclean, Fiona, Mohanty, Sambit K., Raspollini, Maria Rosaria , Sangoi, Ankur R , SHOLL, L B, Siegmund, S, Tickoo, Satish K., Tm, Ulbright, Yilmaz, Asli, Sangoi, Ankur R. , Acosta, Andrés M , Matoso, Andres , Menon, Santosh , Michalova, Kvetoslava , Reyes-Mugica, Miguel , Raspollini, Maria Rosaria , Sangoi, Ankur R , Tsuzuki, Toyonori , Berney, Daniel M , Sangoi, Ankur R , Compérat, Éva , Cornejo, Kristine M. , Baydar, Dilek Ertoy , González-Peramato, María Pilar, Idrees, Muhammad T. , Kao, Chia‐Sui , Maclean, Fiona M. , Mehra, Rohit, Mohanty, Sambit K. , Reyes‐Múgica, Miguel , Siegmund, Sophie C., Tickoo, Satish K. , Tsuzuki, Toyonori , Ulbright, Thomas M. , Williamson, Sean R. , Yilmaz, Aslı , Berney, Daniel M.

Histopathology | July 9, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.1111/his.70207 Get It

Aims Testicular sex cord‐stromal tumours (TSCSTs) are rare neoplasms that arise from (or show differentiation to) elements derived from the sex cords or intertubular stroma. The current classification (World Health Organization, 2022) is based almost entirely on morphology, with many tumour types such as granulosa cell tumours being defined based on their resemblance to ovarian counterparts. Recent studies have uncovered new clinicopathological, molecular and biological nuances within this group of tumours, underscoring differences with ovarian homologues. Methods and results Considering the new data, a group of genitourinary pathology experts (Testicular Sex Cord‐Stromal Tumour [TESST] group) has proposed a revised ‘TESST classification’ that incorporates the best available evidence. This classification is structured and hierarchical, composed of the following tiers: (1) group, (2) category, (3) entity and (4) histological pattern. ‘Group’ refers to the histological compartment a specific tumour belongs to (sex cords, stroma or both), whereas ‘category’ is defined by the phenotype of the tumour, taking non‐neoplastic elements of the ovary and testis as a reference. The third tier, ‘entity’, refers to neoplasms with shared clinicopathological and/or molecular features that justify classifying them as distinct types. Lastly, ‘histological patterns’ are recurrent morphological variations within entities that are not linked to distinct clinicopathological or molecular features. Conclusions We propose a classification that will provide a framework to improve current clinical management and guide future research in the field.
Pathology of adrenal tumours: recent advances
Erickson, Lori A. , Gupta, Sounak , Whaley, Rumeal D. , Erickson, Lori A

Histopathology | December 12, 2025 | Volume: 88 | Issue: 1 | Pages: 301-316

10.1111/his.70045 Get It

Changes in the nomenclature and classification of adrenal gland diseases are the result of advances in understanding the pathogenesis, germline susceptibility and the clonal‐neoplastic nature of diseases of the adrenal gland. Although numerous classification systems have been proposed, the Weiss system remains the standard for distinguishing benign from malignant adult adrenal cortical tumours, but the Helsinki system and the reticulin algorithm are proving to be increasingly useful in difficult cases. Subtypes of adrenal cortical neoplasms, such as myxoid and oncocytic, as well as those occurring in children require special consideration as their classification systems are different from those for standard adult adrenal cortical neoplasms. The importance of proliferative activity is central to the evaluation of adrenal cortical neoplasms. As for primary unilateral aldosteronism, CYP11B2 immunostain is increasingly studied to identify sites of aldosterone production with the hope of finding staining patterns predictive of clinical outcomes. Awareness of the clonal‐neoplastic nature of adrenal cortical nodules and underlying germline susceptibilities has also advanced the classification of adrenal cortical nodular disease. For the adrenal medulla, pheochromocytomas (intra‐adrenal paragangliomas) are all regarded as malignant tumours as they all have potential for metastases and are often associated with genetic susceptibilities.
329 Molecular Profiling of Gastrointestinal Stromal Tumors: Characterization of Primary and Secondary KIT Mutations in a Large Clinical Cohort
Alvand, Saba , Jaladi, Soumya , Voss, Jesse S. , Mopuri, Rohini , Fadra, Numrah, Sunder, Sham, Atiq, Mazen , Gupta, Sounak , Kipp, Benjamin R. , Halling, Kevin C. , Pitel, Beth A. , Davila, Jaime

American Journal of Clinical Pathology | November 12, 2025 | Volume: 164 | Issue: Supplement_1 | Pages: No page available

10.1093/ajcp/aqaf121.356 Get It

Abstract Introduction/Objective Mutations in KIT and PDGFRA drive the majority of gastrointestinal stromal tumors (GIST) and inform targeted therapy selection. While single-driver mutations are typical, a subset of cases harbors multiple KIT mutations, complicating clinical interpretation. This study investigated the frequency, distribution, and inferred hierarchy of primary and secondary KIT mutations using DNA-based sequencing in a large GIST cohort. Methods/Case Report We retrospectively reviewed 579 GIST cases that underwent DNA-based next-generation sequencing using a custom panel targeting all coding exons of KIT and PDGFRA. Tumor-rich formalin-fixed paraffin-embedded (FFPE) tissue was required. In double-mutant cases, the mutation with higher variant allele frequency (VAF) was presumed to be primary. Results Mutations in KIT or PDGFRA were detected in 482/579 cases (83.2%). Among KIT-mutant cases, 28 had two mutations and one had three. Secondary mutations frequently occurred in exons 13, 14, and 17 and were significantly more common in non-gastric tumors (p < 0.0001). Primary mutations most often involved exon 11. Conclusion VAF analysis enabled classification of mutation hierarchy in cases with multiple KIT mutations. The distinct anatomical and exon-specific distribution of primary vs. secondary mutations highlights their potential therapeutic implications and warrants further study.
Evolution of Potentially Actionable Genomic Alterations in Advanced Prostate Cancer: A Real-World Analysis of Serial Circulating Tumor DNA Testing
Muniz, Miguel, Orme, Jacob J. , Wei, Nancy , Koch, Regina M. , Scharf, Zachary, Gupta, Sounak , Kase, Adam M. , Pessoa, Rodrigo Rodrigues, Kwon, Eugene D., Andrews, Jack R. , Muniz, Miguel , Orme, Jacob J , Basourakos, Spyridon P. , Wei, Nancy , Scharf, Zachary , Gupta, Sounak , Kase, Adam M , Childs, Daniel S , Tsai, Jill , Bucheit, Leslie , Riaz, Irbaz Bin , Childs, Daniel S.

Cancers | September 18, 2025 | Volume: 17 | Issue: 18 | Pages: 3048

10.3390/cancers17183048 Get It

Background: Longitudinal genomic profiling through serial circulating tumor DNA (ctDNA) testing offers a noninvasive method to monitor clonal evolution in advanced prostate cancer. This study evaluated the frequency and nature of newly emergent and potentially actionable genomic alterations detected through serial testing in a real-world setting. Methods: We conducted a retrospective analysis of advanced prostate cancer patients who underwent multiple Guardant360 ctDNA tests between October 2020 and March 2023. The study focused on identifying new genomic alterations absent in the initial test, with particular attention to alterations relevant for on-label therapies, therapies approved in other oncologic indications (i.e., off-label), or a clinical trial. Results: Among 479 patients with at least two ctDNA tests, the median interval between the first and second evaluable tests was 207 days. New and potentially actionable alterations emerged in 57.8% of patients, including potential targets for on-label therapies (16.7%), off-label therapies (16.5%), and clinical trials (55.7%). Tumor mutational burden (TMB) increased from “low” to “high” in 11% of patients, although none had microsatellite instability or mismatch repair deficiency. In a Mayo Clinic subset, ten patients received olaparib based on treatment-emergent alterations, but none achieved a prostate-specific antigen (PSA) response. Two patients who transitioned from low to high TMB received pembrolizumab, both with progressive disease as best response. Conclusions: In a large real-world cohort, serial ctDNA testing frequently identified new alterations that were not detected at baseline and are potentially actionable therapeutic targets, highlighting the value of serial genomic profiling for capturing clonal dynamics. Additional research is needed to better establish a framework for retesting and to clarify how these results should influence subsequent treatment decisions.
Assessment and classification of sex cord‐stromal tumours of the testis: recommendations from the testicular sex cord‐stromal tumour ( TESST ) group, an Expert Panel of the Genitourinary Pathology Society
Acosta, Andrés , Compérat, Éva , Cornejo, Kristine M. , Gupta, Sounak , Cheville, John C. , Idrees, Muhammad T. , Raspollini, Maria Rosaria , Reyes‐Múgica, Miguel , Tickoo, Satish K. , Ulbright, Thomas M. , Sholl, Lynette M. , Gonzalez‐Peramato, Pilar, Acosta, Andrés M , Comperat, Eva , Raspollini, Maria Rosaria , Tsuzuki, Toyonori , Williamson, Sean R , Siegmund, Stephanie , Sholl, Lynette , Berney, Daniel M , Reyes-Mugica, Miguel , Colecchia, Maurizio , Gill, Anthony J. , Kao, Chia‐Sui , Maclean, Fiona M. , Matoso, Andres , Michalova, Kvetoslava , Tsuzuki, Toyonori , Williamson, Sean R. , Berney, Daniel M.

Histopathology | June 18, 2025 | Volume: 87 | Issue: 5 | Pages: 660-676

10.1111/his.15482 Get It

Aims Testicular sex cord‐stromal tumours (TSCSTs) are relatively rare, accounting for ~5% of all testicular neoplasms. They were historically classified into Leydig cell tumour, Sertoli cell tumour, granulosa cell tumour, and unclassified sex cord‐stromal tumour. More recently, classification was expanded to incorporate additional histologic types, including some associated with inherited cancer predisposition syndromes. However, the classification of TSCSTs still relies entirely on morphology, with some tumour types being defined based on their resemblance to ovarian counterparts. In recent years, molecular studies have identified drivers and genomic alterations associated with aggressive behaviour and progression; however, these findings have not yet impacted classification and management. Methods and results Under sponsorship of the International Society of Urological Pathology (ISUP) and the Genitourinary Pathology Society (GUPS), a group of genitourinary pathologists was assembled in 2023 with the aim of assessing how to use these new data to improve the classification and management of TSCSTs. Conclusions This paper summarizes the recommendations derived from the consensus activities and the first meeting of the te sticular s ex cord‐ s tromal t umour (TESST) group (held at Johns Hopkins Hospital, Baltimore, USA, 3/23/2024).
EWSR1 Rearrangements in Basaloid Neoplasms With Adnexal Differentiation
Dehner, Carina , Agrawal, Shruti , Ameline, Baptiste , Gupta, Sounak , Halling, Kevin C. , Baumhoer, Daniel, Dehner, Carina A , Gupta, Sounak , Malik, Faizan Ahmad , Baumhoer, Daniel , Guo, Ruifeng

Genes, Chromosomes and Cancer | June 13, 2025 | Volume: 64 | Issue: 6 | Pages: No page available

10.1002/gcc.70057 Get It

ABSTRACTVarious cutaneous adnexal neoplasms have been associated with gene fusions as the main driver of their histogenesis, most of which showed poroid or hidradenomatous differentiation or represented other tumors of sweat glands. Recently, we encountered two cases of primitive basaloid neoplasms of predominantly folliculogenic/pilosebaceous origin, both surprisingly harboring recurrent EWSR1 rearrangements. Both tumors presented in young patients of either sex (1 F; 17 years; 1 M; 37 years) and involved the dermis and subcutaneous tissue of the abdominal wall (case 1) and the buttock (case 2). Histologically, the tumors were composed of primitive, basaloid cells with areas of keratinization (case 1) or foci of sebaceous differentiation (case 2) and stained strongly with keratins, p40 (case 1) or p63 (case 2), while lacking significant CD99 expression in both cases. Case 1 harbored an EWSR1::FLI1 fusion while case 2 harbored an EWSR1::PBX3 fusion. Clinical follow‐up was available for case 2 and showed no evidence of disease at 15 months of follow‐up. Methylation profiling showed case 1 to cluster with cutaneous squamous cell carcinoma, while case 2 was independent but positioned close to salivary gland epithelial‐myoepithelial carcinoma. These findings expand on the histopathologic and molecular genetic features of basaloid tumors with apparent adnexal differentiation and raise awareness to carefully interpret and correlate molecular findings with morphology and immunophenotype to avoid misinterpretation as a mesenchymal neoplasm.
Alterations of G-protein Activating Subunit Genes in Ovarian Hemangiomas: A Molecular Study of 6 Cases Including 3 Anastomosing Hemangiomas With a Cavernous Component
Dashti, Nooshin K. , Swanson, Amy A. , Keeney, Gary L., Edgar, Mark , Gupta, Sounak , Schoolmeester, John K., Edgar, Mark A. , Schoolmeester, John Kenneth

International Journal of Gynecological Pathology | May 9, 2025 | Volume: 45 | Issue: 1 | Pages: 79-81

10.1097/pgp.0000000000001107 Get It

Biomarkers of response to antibody-drug conjugates (TROP2 and nectin-4) and the immune microenvironment (NKG7, PD-L1, and B7-H3) in penile squamous cell carcinoma
Cheville, John C. , Kopp, Karla, Torell, Nate R, Lavoie, Roxane R. , Farrell, Ava, Jaszewski, Brandy L., Jenkins, Sarah M. , Dasari, Surendra , Menon, Santosh, Whaley, Rumeal D. , Boorjian, Stephen A. , Pagliaro, Lance C. , Gupta, Sounak , Lucien, Fabrice , Kopp, Karla J, Smith, Carin Y , Tekin, Burak , Lucien, Fabrice , McCarthy, Michael, Dong, Haidong , Smith, Carin Y. , Erickson, Lori A, Guo, Ruifeng

American Journal of Clinical Pathology | May 6, 2025 | Volume: 163 | Issue: 6 | Pages: 898-908

10.1093/ajcp/aqaf022 Get It

Abstract Objectives We aimed to assess the expression of biomarkers of response to antibody-drug conjugates (TROP2 and nectin-4) and immune microenvironment (NKG7, PD-L1, and B7-H3) in penile squamous cell carcinoma (pSCC). Methods Our archive was queried for patients who had a penectomy for pSCC between 2000 and 2022. Primary tumors were immunostained for B7-H3 and NKG7, while metastatic specimens were immunostained for TROP2 and nectin-4. Expression of PD-L1, TROP2, and nectin-4 in primary tumors was previously characterized. H-scores (0-300) were used to quantify expression. Associations between biomarkers, tumor-infiltrating lymphocytes (TILs), and clinicopathologic and outcome parameters were evaluated. Results For both TROP2 and nectin-4, H-scores within the lymph node metastases were higher compared to those within the primary tumors (mean, 264.5 vs 244.8, P = .0003; mean, 170.6 vs 146.7, P = .05, respectively; 33 paired specimens). For B7-H3 (n = 107), 32.7% of the primary tumors had an H-score of more than 0. In 34.8% of the cases, NKG7 expression was observed in 25% to 50% of the TILs. A significant association was noted between TIL density, B7-H3, NKG7, and PD-L1 expression. Conclusions Therapeutic strategies targeting TROP2 and nectin-4 hold promise for patients with advanced pSCC. The potential of PD-L1, B7-H3, and NKG7 for predicting response to immunomodulatory treatment warrants further research.
A 23‐year‐old woman with a headache and imbalance
Marcelis, Lukas , Folpe, Andrew, Gupta, Sounak , Zepeda‐Mendoza, Cinthya , Zepeda-Mendoza, Cinthya J

Brain Pathology | March 30, 2025 | Volume: 35 | Issue: 5 | Pages: No page available

10.1111/bpa.70008 Get It