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Chari, Suresh T

0000-0002-3924-0971

Mayo Clinic

Mayo Clinic

Citations 52

Next-generation AI for visually occult pancreatic cancer detection in a low-prevalence setting with longitudinal stability and multi-institutional generalisability
Mukherjee, Sovanlal , Antony, Ajith , Trivedi, Kamaxi H. , Karbhari, Aashna , Bhinder, Khurram Khaliq , Truty, Mark, Johnson, Matthew P. , Goenka, Ajit H. , Patnam, Nandakumar G. , Chari, Suresh T , Goenka, Ajit Harishkumar , Zarrintan, Armin , Fletcher, Joel G. , Truty, Mark J. , Chari, Suresh T.

Gut | April 29, 2026 | Volume: No volume available | Issue: No issue available | Pages: gutjnl-2025-337266

10.1136/gutjnl-2025-337266 Get It

Background Failure of conventional imaging to detect pancreatic ductal adenocarcinoma (PDA) at its visually occult pre-diagnostic stage is a primary barrier to improving its otherwise poor rate of survival. Objective To develop and validate the Radiomics-based Early Detection MODel (REDMOD), an AI framework to identify subvisual radiomic signatures of pre-diagnostic PDA on standard-of-care CT. Designs REDMOD was trained on a multi-institutional cohort (n=969; 156 pre-diagnostic, 813 control) and tested on an independent set (n=493; 63 pre-diagnostic, 430 control), simulating a low prevalence (~1:6) early detection paradigm. The fully automated framework couples AI-driven segmentation with a heterogeneous ensemble architecture trained on a 40-feature radiomic signature derived from Synthetic Minority Over-sampling Technique (SMOTE)-balanced data. A tunable Youden Index-optimised classification threshold enables performance calibration without retraining. Validation included direct comparison with radiologists, longitudinal test–retest analysis and external specificity validation across two independent cohorts (n=539 and n=80). Results On an independent test set (n=493), REDMOD identified occult PDA (AUC 0.82; 73.0% sensitivity) at a median 475-day lead time. This represented nearly twofold higher sensitivity than radiologists (38.9%; p<0.001), which grew to nearly threefold (68.0% vs 23.0%) at >24 months lead time. REDMOD showed strong longitudinal stability (90–92% concordance) and generalisable specificity across multi-institutional (81.3%; n=539) and public (87.5%; n=80) datasets. Mechanistic analyses confirmed predictive power derived principally from multi-scale wavelet-filtered textural features (90% of selected signature), which outperformed unfiltered features (AUC 0.82 vs 0.74; p=0.007) in capturing subvisual architectural disruptions. Conclusions REDMOD is an automated, mechanistically grounded, longitudinally stable, externally validated AI that surpasses radiologists for PDA detection at its visually occult pre-diagnostic stage. These attributes position it for prospective validation in high-risk cohorts, a necessary step towards shifting the paradigm from late-stage symptomatic diagnosis to proactive pre-clinical interception.
Chronic Pancreatitis
Vege, Santhi Swaroop, Chari, Suresh T. , Chari, Suresh T , Vege, Santhi Swaroop

New England Journal of Medicine | March 2, 2022 | Volume: 386 | Issue: 9 | Pages: 869-878

10.1056/nejmcp1809396 Get It

Two‐stage deep learning model for fully automated pancreas segmentation on computed tomography: Comparison with intra‐reader and inter‐reader reliability at full and reduced radiation dose on an external dataset
Panda, Ananya , Korfiatis, Panagiotis , Suman, Garima , Garg, Sushil Kumar , Singh, Dhruv P. , Chari, Suresh T. , Goenka, Ajit H. , Garg, Sushil K, Polley, Eric C. , Chari, Suresh T

Medical Physics | February 18, 2021 | Volume: 48 | Issue: 5 | Pages: 2468-2481

10.1002/mp.14782 Get It

PurposeTo develop a two‐stage three‐dimensional (3D) convolutional neural networks (CNNs) for fully automated volumetric segmentation of pancreas on computed tomography (CT) and to further evaluate its performance in the context of intra‐reader and inter‐reader reliability at full dose and reduced radiation dose CTs on a public dataset.MethodsA dataset of 1994 abdomen CT scans (portal venous phase, slice thickness ≤ 3.75‐mm, multiple CT vendors) was curated by two radiologists (R1 and R2) to exclude cases with pancreatic pathology, suboptimal image quality, and image artifacts (n = 77). Remaining 1917 CTs were equally allocated between R1 and R2 for volumetric pancreas segmentation [ground truth (GT)]. This internal dataset was randomly divided into training (n = 1380), validation (n = 248), and test (n = 289) sets for the development of a two‐stage 3D CNN model based on a modified U‐net architecture for automated volumetric pancreas segmentation. Model’s performance for pancreas segmentation and the differences in model‐predicted pancreatic volumes vs GT volumes were compared on the test set. Subsequently, an external dataset from The Cancer Imaging Archive (TCIA) that had CT scans acquired at standard radiation dose and same scans reconstructed at a simulated 25% radiation dose was curated (n = 41). Volumetric pancreas segmentation was done on this TCIA dataset by R1 and R2 independently on the full dose and then at the reduced radiation dose CT images. Intra‐reader and inter‐reader reliability, model’s segmentation performance, and reliability between model‐predicted pancreatic volumes at full vs reduced dose were measured. Finally, model’s performance was tested on the benchmarking National Institute of Health (NIH)‐Pancreas CT (PCT) dataset.ResultsThree‐dimensional CNN had mean (SD) Dice similarity coefficient (DSC): 0.91 (0.03) and average Hausdorff distance of 0.15 (0.09) mm on the test set. Model’s performance was equivalent between males and females (P = 0.08) and across different CT slice thicknesses (P > 0.05) based on noninferiority statistical testing. There was no difference in model‐predicted and GT pancreatic volumes [mean predicted volume 99 cc (31cc); GT volume 101 cc (33 cc), P = 0.33]. Mean pancreatic volume difference was −2.7 cc (percent difference: −2.4% of GT volume) with excellent correlation between model‐predicted and GT volumes [concordance correlation coefficient (CCC)=0.97]. In the external TCIA dataset, the model had higher reliability than R1 and R2 on full vs reduced dose CT scans [model mean (SD) DSC: 0.96 (0.02), CCC = 0.995 vs R1 DSC: 0.83 (0.07), CCC = 0.89, and R2 DSC:0.87 (0.04), CCC = 0.97]. The DSC and volume concordance correlations for R1 vs R2 (inter‐reader reliability) were 0.85 (0.07), CCC = 0.90 at full dose and 0.83 (0.07), CCC = 0.96 at reduced dose datasets. There was good reliability between model and R1 at both full and reduced dose CT [full dose: DSC: 0.81 (0.07), CCC = 0.83 and reduced dose DSC:0.81 (0.08), CCC = 0.87]. Likewise, there was good reliability between model and R2 at both full and reduced dose CT [full dose: DSC: 0.84 (0.05), CCC = 0.89 and reduced dose DSC:0.83(0.06), CCC = 0.89]. There was no difference in model‐predicted and GT pancreatic volume in TCIA dataset (mean predicted volume 96 cc (33); GT pancreatic volume 89 cc (30), p = 0.31). Model had mean (SD) DSC: 0.89 (0.04) (minimum–maximum DSC: 0.79 −0.96) on the NIH‐PCT dataset.ConclusionA 3D CNN developed on the largest dataset of CTs is accurate for fully automated volumetric pancreas segmentation and is generalizable across a wide range of CT slice thicknesses, radiation dose, and patient gender. This 3D CNN offers a scalable tool to leverage biomarkers from pancreas morphometrics and radiomics for pancreatic diseases including for early pancreatic cancer detection.
High Detection Rates of Pancreatic Cancer Across Stages by Plasma Assay of Novel Methylated DNA Markers and CA19-9
Majumder, Shounak , Wu, Chung Wah, Bamlet, William R. , Burger, Kelli N. , Postier, Neil, Fuente, Jaime de la , Lidgard, Graham P. , Allawi, Hatim T. , Petersen, Gloria M. , Chari, Suresh T. , Ahlquist, David A. , Foote, Patrick H. , Berger, Calise K. , Mahoney, Douglas W. , Bamlet, William R , de la Fuente, Jaime , Doering, Karen A , Kisiel, John B , Majumder, Shounak , Chari, Suresh T , Taylor, William R. , Doering, Karen A. , Kisiel, John B.

Clinical Cancer Research | February 16, 2021 | Volume: 27 | Issue: 9 | Pages: 2523-2532

10.1158/1078-0432.ccr-20-0235 Get It

Abstract Purpose: We have previously identified tissue methylated DNA markers (MDMs) associated with pancreatic ductal adenocarcinoma (PDAC). In this case–control study, we aimed to assess the diagnostic performance of plasma MDMs for PDAC. Experimental Design: Thirteen MDMs (GRIN2D, CD1D, ZNF781, FER1L4, RYR2, CLEC11A, AK055957, LRRC4, GH05J042948, HOXA1, PRKCB, SHISA9, and NTRK3) were identified on the basis of selection criteria applied to results of prior tissue experiments and assays were optimized in plasma. Next, 340 plasma samples (170 PDAC cases and 170 controls) were assayed using target enrichment long-probe quantitative amplified signal method. Initially, 120 advanced-stage PDAC cases and 120 healthy controls were used to train a prediction algorithm at 97.5% specificity using random forest modeling. Subsequently, the locked algorithm derived from the training set was applied to an independent blinded test set of 50 early-stage PDAC cases and 50 controls. Finally, data from all 340 patients were combined, and cross-validated. Results: The cross-validated area under the receiver operating characteristic curve (AUC) for the training set was 0.93 (0.89–0.96) for the MDM panel alone, 0.91 (95% confidence interval, 0.87–0.96) for carbohydrate antigen 19-9 (CA19-9) alone, and 0.99 (0.98–1) for the combined MDM-CA19-9 panel. In the test set of early-stage PDAC, the AUC for MDMs alone was 0.84 (0.76–0.92), CA19-9 alone was 0.87 (0.79–0.94), and combined MDM-CA19-9 panel was 0.90 (0.84–0.97) significantly better compared with either MDMs alone or CA19-9 alone (P = 0.0382 and 0.0490, respectively). At a preset specificity of 97.5%, the sensitivity for the combined panel in the test set was 80% (28%–99%) for stage I disease and 82% (68%–92%) for stage II disease. Using the combined datasets, the cross-validated AUC was 0.9 (0.86–0.94) for the MDM panel alone and 0.89 for CA19-9 alone (0.84–0.93) versus 0.97 (0.94–0.99) for the combined MDM-CA19-9 panel (P ≤ 0.0001). Overall, cross-validated sensitivity of MDM-CA19-9 panel was 92% (83%–98%), with an observed specificity of 92% at the preset specificity of 97.5%. Conclusions: Plasma MDMs in combination with CA19-9 detect PDAC with significantly higher accuracy compared with either biomarker individually.
Utilisation of artificial intelligence for the development of an EUS-convolutional neural network model trained to enhance the diagnosis of autoimmune pancreatitis
Marya, Neil B. , Powers, Patrick, Chari, Suresh T. , Gleeson, Ferga C. , Leggett, Cadman L. , Dayyeh, Barham K. Abu , Iyer, Prasad G. , Majumder, Shounak , Pearson, Randall K., Petersen, Bret T. , Rajan, Elizabeth , Sawas, Tarek , Vege, Santhi Swaroop, Chen, Shigao , Long, Zaiyang , Hough, David M., Mara, Kristin C. , Levy, Michael J. , Abu Dayyeh, Barham K , Iyer, P G , Majumder, Shounak , Sawas, T , Vege, Santhi S, Mara, Kristin, Mara, Kristin C , Leggett, Cadman L , Chari, Suresh T , Marya, Neil B. , Chandrasekhara, Vinay , Storm, Andrew C. , Vege, Santhi Swaroop , Levy, Michael J.

Gut | October 7, 2020 | Volume: 70 | Issue: 7 | Pages: 1335-1344

10.1136/gutjnl-2020-322821 Get It

Objective The diagnosis of autoimmune pancreatitis (AIP) is challenging. Sonographic and cross-sectional imaging findings of AIP closely mimic pancreatic ductal adenocarcinoma (PDAC) and techniques for tissue sampling of AIP are suboptimal. These limitations often result in delayed or failed diagnosis, which negatively impact patient management and outcomes. This study aimed to create an endoscopic ultrasound (EUS)-based convolutional neural network (CNN) model trained to differentiate AIP from PDAC, chronic pancreatitis (CP) and normal pancreas (NP), with sufficient performance to analyse EUS video in real time. Design A database of still image and video data obtained from EUS examinations of cases of AIP, PDAC, CP and NP was used to develop a CNN. Occlusion heatmap analysis was used to identify sonographic features the CNN valued when differentiating AIP from PDAC. Results From 583 patients (146 AIP, 292 PDAC, 72 CP and 73 NP), a total of 1 174 461 unique EUS images were extracted. For video data, the CNN processed 955 EUS frames per second and was: 99% sensitive, 98% specific for distinguishing AIP from NP; 94% sensitive, 71% specific for distinguishing AIP from CP; 90% sensitive, 93% specific for distinguishing AIP from PDAC; and 90% sensitive, 85% specific for distinguishing AIP from all studied conditions (ie, PDAC, CP and NP). Conclusion The developed EUS-CNN model accurately differentiated AIP from PDAC and benign pancreatic conditions, thereby offering the capability of earlier and more accurate diagnosis. Use of this model offers the potential for more timely and appropriate patient care and improved outcome.
Early detection of pancreatic cancer
Garg, Sushil Kumar , Chari, Suresh T. , Chari, Suresh T

Current Opinion in Gastroenterology | July 13, 2020 | Volume: 36 | Issue: 5 | Pages: 456-461

10.1097/mog.0000000000000663 Get It

Purpose of review Pancreatic cancer is the third leading cause of cancer death and with a dismal 5-year survival of 10%. Poor survival of pancreatic cancer is mostly due to its presentation and diagnosis at a late stage. The present article aims to update clinicians with recent progress in the field of early detection of pancreatic cancer. Recent findings Pancreatic cancer screening is not recommended in the general population due to its low prevalence. In this review, we discuss high-risk groups for pancreatic cancer, including inherited predisposition to pancreatic cancer, new-onset diabetes, mucinous pancreatic cyst, and chronic pancreatitis. We discuss methods of enrichment of high-risk groups with clinical models using electronic health records and biomarkers. We also discuss improvements in imaging modalities and emerging role of machine learning and artificial intelligence in the field of imaging and biomarker to aid in early identification of pancreatic cancer. Summary There are still vast challenges in the field of early detection of pancreatic cancer. We need to develop noninvasive prediagnostic validated biomarkers for longitudinal surveillance of high-risk individuals and imaging modalities that can identify pancreatic cancer early.
Impact of disconnected pancreatic duct syndrome on endoscopic ultrasound-guided drainage of pancreatic fluid collections
Wang, Lillian , Elhanafi, Sherif , Topazian, Mark , Majumder, Shounak , Levy, Michael J. , Petersen, Bret T. , Martin, John A. , Chari, Suresh T. , Vege, Santhi Swaroop , Abu Dayyeh, Barham K, Vege, Santhi S, Majumder, Shounak , Chari, Suresh T , Storm, Andrew C. , Dayyeh, Barham K. Abu , Levy, Michael J. , Chandrasekhara, Vinay

Endoscopy | July 6, 2020 | Volume: 53 | Issue: 06 | Pages: 603-610

10.1055/a-1213-1489 Get It

Abstract Background Endoscopic intervention for pancreatic fluid collections (PFCs) with disconnected pancreatic duct syndrome (DPDS) has been associated with failures and increased need for additional endoscopic and non-endoscopic interventions. The primary aim of this study was to determine the outcomes of endoscopic ultrasound (EUS)-guided transmural drainage of PFCs in patients with DPDS. Methods In patients undergoing EUS-guided drainage of PFCs from January 2013 to January 2018, demographic profiles, procedural indications and details, adverse events, outcomes, and subsequent interventions were retrospectively collected. Overall treatment success was determined by PFC resolution on follow-up imaging or stent removal without recurrence. Results EUS-guided drainage of PFCs was performed in 141 patients. DPDS was present in 57 of them (40 %) and walled-off necrosis was the most frequent type of PFC (55 %). DPDS was not associated with lower clinical success, increased number of repeat interventions, or increased time to PFC resolution. Patients with DPDS were more likely to be treated with permanent transmural plastic double-pigtail stents (odds ratio [OR] 6.4; 95 % confidence interval [CI] 2.5 – 16.5; P < 0.001). However, when stents were removed, DPDS was associated with increased PFC recurrence after stent removal (OR 8.0; 95 %CI 1.2 – 381.8; P = 0.04). Conclusions DPDS frequently occurs in patients with PFCs but does not negatively impact successful resolution. DPDS is associated with increased PFC recurrence after stent removal.
Systemic Proteome Alterations Linked to Early Stage Pancreatic Cancer in Diabetic Patients
Peng, Hong , Pan, Sheng, Yan, Yuanqing , Brand, Randall E. , Petersen, Gloria M. , Chari, Suresh T. , Lai, Lisa A. , Eng, Jimmy K. , Brentnall, Teresa A. , Chen, Ru , Brand, Randall E , Chari, Suresh T

Cancers | June 15, 2020 | Volume: 12 | Issue: 6 | Pages: 1534

10.3390/cancers12061534 Get It

Background: Diabetes is a risk factor associated with pancreatic ductal adenocarcinoma (PDAC), and new adult-onset diabetes can be an early sign of pancreatic malignancy. Development of blood-based biomarkers to identify diabetic patients who warrant imaging tests for cancer detection may represent a realistic approach to facilitate earlier diagnosis of PDAC in a risk population. Methods: A spectral library-based proteomic platform was applied to interrogate biomarker candidates in plasma samples from clinically well-defined diabetic cohorts with and without PDAC. Random forest algorithm was used for prediction model building and receiver operating characteristic (ROC) curve analysis was applied to evaluate the prediction probability of potential biomarker panels. Results: Several biomarker panels were cross-validated in the context of detection of PDAC within a diabetic background. In combination with carbohydrate antigen 19-9 (CA19-9), the panel, which consisted of apolipoprotein A-IV (APOA4), monocyte differentiation antigen CD14 (CD14), tetranectin (CLEC3B), gelsolin (GSN), histidine-rich glycoprotein (HRG), inter-alpha-trypsin inhibitor heavy chain H3 (ITIH3), plasma kallikrein (KLKB1), leucine-rich alpha-2-glycoprotein (LRG1), pigment epithelium-derived factor (SERPINF1), plasma protease C1 inhibitor (SERPING1), and metalloproteinase inhibitor 1 (TIMP1), demonstrated an area under curve (AUC) of 0.85 and a two-fold increase in detection accuracy compared to CA19-9 alone. The study further evaluated the correlations of protein candidates and their influences on the performance of biomarker panels. Conclusions: Proteomics-based multiplex biomarker panels improved the detection accuracy for diagnosis of early stage PDAC in diabetic patients.
Early Detection of Sporadic Pancreatic Ductal Adenocarcinoma: Problems, Promise, and Prospects
Chari, Suresh T. , Chari, Suresh T , Sharma, Ayush , Maitra, Anirban

Annals of Internal Medicine | March 16, 2020 | Volume: 172 | Issue: 8 | Pages: 558-559

10.7326/m19-2336 Get It

The 2019 American College of Rheumatology/European League Against Rheumatism Classification Criteria for IgG4‐Related Disease
Wallace, Zachary S. , Naden, Ray, Chari, Suresh T. , Choi, Hyon K. , Della‐Torre, Emanuel, Dicaire, Jean‐Francois, Hart, Phil A. , Inoue, Dai , Khosroshahi, Arezou , Lanzillotta, Marco , Okazaki, Kazuichi , Perugino, Cory A. , Saeki, Takako , Sekiguchi, Hiroshi , Schleinitz, N. , Stone, James R. , Takahashi, Naoki , Umehara, Hisanori , Webster, George, Zen, Yoh , Stone, John H. , Culver, Emma , Frulloni, Luca , Lerch, Markus M. , Matsui, Shoko , Rosenbaum, James T. , Chari, Suresh, Choi, Hyon , Stone, John H , Takahashi, Naoki , Chari, Suresh T , Della‐Torre, Emanuel , Kawano, Mitsuhiro , Kubota, Kensuke , Sharma, Amita

Arthritis & Rheumatology | December 3, 2019 | Volume: 72 | Issue: 1 | Pages: 7-19

10.1002/art.41120 Get It

Objective IgG4‐related disease (IgG4‐ RD ) can cause fibroinflammatory lesions in nearly any organ. Correlation among clinical, serologic, radiologic, and pathologic data is required for diagnosis. This work was undertaken to develop and validate an international set of classification criteria for IgG4‐ RD . Methods An international multispecialty group of 86 physicians was assembled by the American College of Rheumatology ( ACR ) and the European League Against Rheumatism ( EULAR ). Investigators used consensus exercises, existing literature, derivation and validation cohorts of 1,879 subjects (1,086 cases, 793 mimickers), and multicriterion decision analysis to identify, weight, and test potential classification criteria. Two independent validation cohorts were included. Results A 3‐step classification process was developed. First, it must be demonstrated that a potential IgG4‐ RD case has involvement of at least 1 of 11 possible organs in a manner consistent with IgG4‐ RD . Second, exclusion criteria consisting of a total of 32 clinical, serologic, radiologic, and pathologic items must be applied; the presence of any of these criteria eliminates the patient from IgG4‐ RD classification. Third, 8 weighted inclusion criteria domains, addressing clinical findings, serologic results, radiology assessments, and pathology interpretations, are applied. In the first validation cohort, a threshold of 20 points had a specificity of 99.2% (95% confidence interval [95% CI ] 97.2–99.8%) and a sensitivity of 85.5% (95% CI 81.9–88.5%). In the second, the specificity was 97.8% (95% CI 93.7–99.2%) and the sensitivity was 82.0% (95% CI 77.0–86.1%). The criteria were shown to have robust test characteristics over a wide range of thresholds. Conclusion ACR / EULAR classification criteria for IgG4‐ RD have been developed and validated in a large cohort of patients. These criteria demonstrate excellent test performance and should contribute substantially to future clinical, epidemiologic, and basic science investigations.