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Garg, Sushil Kumar

https://orcid.org/0000-0002-8621-0214

Mayo Clinic

Mayo Clinic Health System

Citations 35

Longitudinal Data from a Large, Multi-Target Stool DNA Colorectal Cancer Screening Program
Garg, Sushil Kumar , Hintz, Carley F , Kolarik, Hannah J , Mau, Brayden , Hubers, Jeffrey , Arce, Victor, Ebner, Derek W. , Gurudu, Suryakanth, Bi, Yan , Greenwood, Jason D. , Chaudhary, Rajeev, Hubers, Jeffery , Gurudu, Suryakanth R, Greenwood, Jason , Kisiel, John B , Ebner, Derek , Kolarik, Hannah , Arce, Victor, Kisiel, John B.

American Journal of Gastroenterology | September 3, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.14309/ajg.0000000000004196 Get It

Background & Aims: Multi-target stool DNA (mt-sDNA) is an established stool-based colorectal cancer screening test, yet long-term performance is not well-described. We evaluated follow-up colonoscopy rates & quality, neoplasia yield, and repeat-testing adherence over 10 years with an integrated screening program. Methods: We assembled a retrospective cohort of mt-sDNA tests (September 2014–July 2025) within a multi-site health system. A validated large-language-model pipeline extracted colonoscopy, pathology, and quality endpoints from free-text reports. Detection outcomes (adenoma detection rate, advanced neoplasia, modified advanced adenoma, sessile serrated lesion (SSL), and negative exams) were calculated among high-quality exams; adenocarcinoma, bowel preparation adequacy, and cecal intubation rate (CIR) used all screening exams. We assessed colonoscopy completion ≤1 year after positive mt-sDNA, follow-up colonoscopy findings, findings by time-to-colonoscopy, and adherence to repeat mt-sDNA after negative result. Results: Among 148,624 tests in 110,410 individuals, positivity was 13.6%. Of 19,506 positives, 65.1% completed colonoscopy within 12 months (median 82 days). Colonoscopy after a positive mt-sDNA had high yield: advanced adenoma diagnosis was 30.7%; adenocarcinoma was 1.3%. Of patients who had colonoscopy within 3 years of a negative mt-sDNA test, 45.2% had adenoma/serrated lesion, 9.3% had advanced adenoma and 0.5% had colon cancer. Adenoma detection rate after positive mt-sDNA (>50%) exceeded specialty society quality benchmarks and increased over time; Longer intervals (>6 months) to colonoscopy after a positive test were associated with higher advanced adenoma (trend P=0.001).After an initial negative mt-sDNA, only 35.3% were screened again by mt-sDNA testing within 3 years. Conclusions: Over a decade,mt-sDNA screening achieved high colonoscopy qualitybut revealed critical gaps in the care cascade. One-third of positive tests lacked timely follow-up and nearly two-thirds of negative tests were not repeated on schedule, suggesting opportunities for system-level interventions.
Colon-Pilot: A Generative AI Tool for Automated Colonoscopy Surveillance Recommendations and 2024 ACG/ASGE Quality Benchmarking
Garg, Sushil Kumar , Mau, Brayden , Hubers, Jeffery , Arce, Victor, Hooper, Nicole, Lindquist, Jennifer, Harper, Sarah B. , Thayer, Ann B., Mukherjee, Piyush, Loufek, Brenna, Melnick, Joe , Rost, Lauren, Robbins, Steven A. , Chaudhary, Rajeev, Harper, Sarah B , Loufek, Brenna T , Rost, Lauren M , Gomes, Rahul , Chaudhary, Rajeev , Hubers, Jeffrey , Arce, Victor, Mukherjee, Piyush, Rost, Lauren M. , Gomes, Rahul

American Journal of Gastroenterology | February 10, 2026 | Volume: 121 | Issue: 4 | Pages: 964-973

10.14309/ajg.0000000000003946 Get It

INTRODUCTION: High-quality colonoscopy requires accurate risk stratification for surveillance per the 2020 US Multi-Society Task Force guidelines and adherence to 2024 American College of Gastroenterology/American Society for Gastrointestinal Endoscopy quality benchmarks. Both are operationally challenging in clinical practice. We developed and validated Colon-Pilot, a large language model—powered clinical decision support system using GPT-4o to automate and standardize both functions. METHODS: The system was evaluated in 2 operational modes: (i) a human-in-the-loop clinical decision support validation of surveillance recommendations for 596 colonoscopies, comparing concordance with 2020 US Multi-Society Task Force guidelines against expert consensus, and (ii) an automated administrative audit applying Colon-Pilot to 42,632 colonoscopies across the Mayo Clinic Health System to calculate 2024 American College of Gastroenterology/American Society for Gastrointestinal Endoscopy priority quality indicators. Recommendations were autogenerated unless predefined safety criteria triggered manual review. RESULTS: Colon-Pilot issued recommendations for 522 of 596 cases (87.6%) and flagged 12.4% for manual review. For automated cases, guideline-concordant accuracy was 97.5% (Cohen κ = 0.970) versus 69.7% (κ = 0.781) for original endoscopist recommendations. Discordant artificial intelligence (AI) cases (n = 13) most often recommended longer-than-appropriate intervals (62%). Applied to the enterprise data set, Colon-Pilot calculated performance exceeding 2024 targets: adenoma detection rate 49.8% (≥35%), sessile serrated lesion detection rate 17.7% (≥6%), bowel preparation adequacy 91.8% (≥90%), and cecal intubation rate 97.4% (≥95%). DISCUSSION: Colon-Pilot demonstrated high fidelity in applying surveillance guidelines and automated quality benchmarking, outperforming unassisted endoscopists in guideline adherence. By combining safety protocols with large-scale automated reporting, it offers a scalable solution for improving both efficiency and quality in colorectal cancer prevention.
Accurate and Scalable Classification of Colonoscopy Neoplasia Using Machine Learning and Natural Language Processing
Broderick, Brendan T., Greenwood, Jason D. , Burger, Kelli N. , Garg, Sushil Kumar , Gurudu, Suryakanth, Ebner, Derek W. , Broderick, Brendan, Greenwood, Jason, Mahoney, Douglas, Burger, Kelli, Gurudu, Suryakanth R, Ebner, Derek , Kisiel, John, Mahoney, Douglas W. , Wallace, Michael B. , Kisiel, John B.

Clinical and Translational Gastroenterology | December 9, 2025 | Volume: 17 | Issue: 2 | Pages: e00959

10.14309/ctg.0000000000000959 Get It

INTRODUCTION: Colorectal cancer remains a leading cause of cancer associated death in the United States and colonoscopy the primary screening strategy for prevention. Rates of adenomatous and serrated neoplasia detection are inversely associated with postcolonoscopy colorectal cancer. This crucial quality metric depends on accurate ascertainment of colorectal neoplasia findings from both endoscopy and histopathology records. We aimed to assess the feasibility of a random forest machine learning model to rapidly and accurately categorize colorectal neoplasia from electronic health record data. METHODS: A retrospective cohort study compared neoplasia detection rates among individuals undergoing colonoscopy at a large academic institution to develop a rule-based algorithm to categorize colorectal neoplasia from endoscopy reports and pathology systematized nomenclature of medicine – clinical terms. This cohort provided a large training set to develop a natural language processing system using a random forest approach to automatically classify unstructured pathology findings into adenoma, serrated, or advanced neoplasms. This system was manually validated through an independent holdout set. RESULTS: The training set comprised 35,953 unstructured pathology reports with matched systematized nomenclature of medicine – clinical terms from 95,188 unstructured colonoscopy reports. The final model was assessed on an independent holdout set of 337 manually annotated procedures obtaining an area under the receiver operating characteristic curve of 0.997 (confidence interval [CI] 0.994–1), 0.99 (CI 0.98–1), and 0.99 (CI 0.98–0.99) for prediction of adenoma, serrated, and advanced lesions, respectively. DISCUSSION: The random forest-based hybrid natural language processing system for classification of colonoscopy results was both accurate and explainable. NLP combined with effective machine learning algorithms can provide a scalable strategy for colonoscopy quality monitoring.
Semaglutide-Associated Gastric Pneumatosis
Turunen, Arto , Coombs, Reilly A. , Garg, Sushil Kumar , Turunen, Andrew M.

ACG Case Reports Journal | December 27, 2024 | Volume: 12 | Issue: 1 | Pages: e01579

10.14309/crj.0000000000001579 Get It

ABSTRACT Semaglutide, a glucagon-like peptide-1 receptor agonist, used for Type 2 diabetes mellitus and more recently for weight loss, often causes gastrointestinal adverse effects such as delayed gastric emptying and abdominal discomfort. Current literature has not described an associated case of gastric pneumatosis with semaglutide use. We report a 61-year-old man on semaglutide for 9 months with gastric pneumatosis. Symptoms resolved on discontinuation. Clinicians should be vigilant for significant gastrointestinal adverse effects, including pneumatosis with semaglutide use.
Surgical Trends in Chronic Pancreatitis From 2014 to 2021
Turunen, Arto , Garg, Sushil Kumar , Turunen, Andrew

Pancreas | November 26, 2024 | Volume: 54 | Issue: 4 | Pages: e310-e316

10.1097/mpa.0000000000002438 Get It

Objectives: We analyzed annual surgical trends for benign chronic pancreatitis (CP), studying specifically mortality, morbidity, and pancreatic fistula rates. We also aimed to identify predictors of pancreatic fistula formation. Materials and Methods: For this analysis, we used data from the American College of Surgeons National Surgical Quality Improvement Program from 2014 to 2021. The study included patients who underwent surgery for benign CP. Data collected included patient demographics, preoperative variables, and postoperative outcomes. Data were analyzed with univariate and multivariate analyses, with significance defined as P ≤ 0.05. Results: Over the study period, the number of pancreatic surgical procedures increased by 49.3%, although surgery specifically for CP declined by 31.7%. The rate of pancreatic fistula formation decreased 44.9%, and mortality decreased 31.9%. Significant predictors of a pancreatic fistula included no diabetes, preoperative sepsis, soft texture of the pancreatic gland, and greater patient weight. Conclusion: Surgery for benign CP decreased substantially despite the established efficacy of surgical intervention for long-term pain management. The concurrent decline in mortality and rates of pancreatic fistula formation suggest advances over the study years in surgical and postoperative care.
Hepatitis B immune globulin for preventing hepatitis B recurrence after liver transplantation
Berdichevski, Tania, Garg, Sushil Kumar , Katz, Lior H.

Cochrane Database of Systematic Reviews | November 16, 2021 | Volume: 2021 | Issue: 11 | Pages: No page available

10.1002/14651858.cd010174.pub2 Get It

Adefovir dipivoxil versus other antiviral drugs for chronic hepatitis B
Garg, Sushil Kumar , Sethi, Saurabh, Kongnyuy, Eugene J, Njei, Basile

Cochrane Database of Systematic Reviews | November 2, 2021 | Volume: 2021 | Issue: 11 | Pages: No page available

10.1002/14651858.cd009522.pub2 Get It

Adefovir dipivoxil for chronic hepatitis B
Garg, Sushil Kumar , Alam, Shaan E., Kongnyuy, Eugene J, Njei, Basile , McCarty, Thomas R.

Cochrane Database of Systematic Reviews | November 2, 2021 | Volume: 2021 | Issue: 11 | Pages: No page available

10.1002/14651858.cd009521.pub2 Get It

Treatments for subacute sclerosing panencephalitis
Kannan, Lakshminarayanan, Garg, Sushil Kumar , Sankar, Mari Jeeva, Anand, Vidhu , Kannan, Lakshminarayanan, Arya, Ravindra , Sankar, M. Jeeva

Cochrane Database of Systematic Reviews | September 9, 2021 | Volume: 2021 | Issue: 7 | Pages: No page available

10.1002/14651858.cd010867.pub2 Get It

Abstract PO-084: Automated detection of pancreatic ductal adenocarcinoma (PDAC) on CT scans using artificial intelligence (AI): Impact of inclusion of automated pancreas segmentation on the accuracy of 3D-convolutional neural network (CNN)
Patra, Anurima , Panagiotis, Korfiatis, Suman, Garima , Garg, Sushil Kumar , Goenka, Ajit H. , Panda, Ananya

Clinical Cancer Research | March 1, 2021 | Volume: 27 | Issue: 5_Supplement | Pages: PO-084-PO-084

10.1158/1557-3265.adi21-po-084 Get It

Abstract Purpose: Around 30% of PDAC less than 2-cm tend to go undetected on CT due to their subtle imaging signatures. Automated detection of PDAC using AI represents an opportunity to augment physician expertise and to improve outcomes through early detection of PDAC. Our purpose was to develop a 3D-CNN for fully automated detection of PDAC and to further evaluate the impact of inclusion of pancreas segmentation on the accuracy of this 3D-CNN. Methods: A Medical Imaging Data Readiness Scale (MIDaR) level A dataset (portal venous phase CTs, slice thickness ≤ 3.75 mm) of 466 treatment-naïve biopsy-proven PDAC and 1994 subjects with normal pancreas was created after exclusion of CTs with suboptimal image quality or biliary stents. Volumetric pancreas and tumor segmentations on CTs were done by two radiologists using 3D Slicer. A total of 370 CTs with PDAC and 370 CTs with normal pancreas were randomly selected for separate training and validation sets, and 396 CTs (96 CTs with PDAC and 300 CTs with normal pancreas) were utilized for testing. Two separate 3D-CNNs were trained. A three-stage bounding-box-only model (A): stage 1 was based on a UNET-like architecture and localized the pancreas on CT with a bounding box; stage 2 utilized an Inception ResNet architecture and classified each slice through the pancreas into PDAC vs. normal; and stage 3 utilized the output of stage 2 to generate final classification for a given CT. Conversely, a four-stage pancreas segmentation-based model (B) included stage 1 of model A followed by an additional stage of automated pancreas and tumor segmentation (stage 2), classification of each slice through the pancreas into PDAC vs. normal (stage 3) and, finally, generation of final classification score (stage 4) for a given CT. Area under the receiver operating characteristic curve (AUROC) of the two models were compared on the test set. Results: Mean (SD) PDAC diameter in the test set was 1.1 (0.43) cm. Model A (three-stage bounding-box-only) correctly classified 305 (77%) out of 396 CTs from the test set into PDAC vs. normal. It incorrectly classified 12/96 (12.5%) CTs with PDAC as normal and 79/300 (26%) normal CTs as PDAC. AUROC for model A was 0.85. Model B (four-stage pancreas segmentation-based) correctly classified 351 (88%) out of 396 CTs. It incorrectly classified 13/96 (13.5%) CTs with PDAC as normal and 32/300 (10.7%) normal CTs as PDAC. AUROC for model B was 0.94. AUROC for model B was significantly higher than model A (p<0.005). Conclusion: A 3D-CNN can detect small PDAC with high accuracy using automated localization of pancreas with a bounding box without relying on separate pancreas segmentation. Inclusion of an additional automated pancreas segmentation step reduced false positives with consequent incremental gain in the model’s accuracy. Prospective validation and subsequent integration of such models into clinical workflows has the potential to reduce inadvertent errors in detection of subtle or small PDAC on standard-of-care CT scans. Citation Format: Anurima Patra, Korfiatis Panagiotis, Garima Suman, Ananya Panda, Sushil Kumar Garg, Ajit Goenka. Automated detection of pancreatic ductal adenocarcinoma (PDAC) on CT scans using artificial intelligence (AI): Impact of inclusion of automated pancreas segmentation on the accuracy of 3D-convolutional neural network (CNN) [abstract]. In: Proceedings of the AACR Virtual Special Conference on Artificial Intelligence, Diagnosis, and Imaging; 2021 Jan 13-14. Philadelphia (PA): AACR; Clin Cancer Res 2021;27(5_Suppl):Abstract nr PO-084.