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Al-Kali, Aref

0000-0002-0824-3715

Mayo Clinic

Division of Hematology, Mayo Clinic, Rochester, MN.

Citations 31

PHF6 mutations in chronic myelomonocytic leukemia identify a unique subset of patients with distinct phenotype and superior prognosis
Tefferi, Ayalew , Fathima, Saubia, Alsugair, Ali, Aperna, Fnu, Natu, Anuya , Abdelmagid, Maymona, Csizmar, Clifford M. , Gurney, Mark E. , Finke, Christy M. , Mangaonkar, Abhishek A. , Al‐Kali, Aref , Pardanani, Animesh , Reichard, Kaaren K. , He, Rong , Gangat, Naseema , Patnaik, Mrinal M. , Fathima, Saubia , Alsugair, Ali Khalid A, Abdelmagid, Maymona G, Gurney, Mark , Mangaonkar, Abhishek A. , Al-Kali, Aref , Pardanani, Animesh , He, Rong , Gangat, Naseema , Patnaik, Mrinal , Csizmar, Clifford , Fathima, Saubia , Lasho, Terra L.

American Journal of Hematology | September 27, 2024 | Volume: 99 | Issue: 12 | Pages: 2321-2327

10.1002/ajh.27492 Get It

AbstractThe current study was inspired by observations from exploratory analyses of an institutional cohort with chronic myelomonocytic leukemia (CMML; N = 398) that revealed no instances of blast transformation in the seven patients with plant homeodomain finger protein 6 (PHF6) mutation (PHF6MUT). A subsequent Mayo Clinic enterprise‐wide database search identified 28 more cases with PHF6MUT. Compared with their wild‐type PHF6 counterparts (PHF6WT; N = 391), PHF6MUT cases (N = 35) were more likely to co‐express TET2 (89% vs. 45%; p < .01), RUNX1 (29% vs. 14%; p = .03), CBL (14% vs. 2%; p < .01), and U2AF1 (17% vs. 6%; p = .04) and less likely SRSF2 (23% vs. 45%; p < .01) mutation. They were also more likely to display loss of Y chromosome (LoY; 21% vs. 2%; p < .01) and platelets <100 × 109/L (83% vs. 51%; p < .01). Multivariable analysis identified PHF6MUT (HR 0.28, 95% CI 0.15–0.50) and DNMT3AMUT (HR 5.8, 95% CI 3.3–10.5) as the strongest molecular predictors of overall survival. The same was true for blast transformation‐free survival with corresponding HR (95% CI) of 0.08 (0.01–0.6) and 9.5 (3.8–23.5). At median 20 months follow‐up, blast transformation was documented in none of the 33 patients with PHF6MUT/DNMT3AWT but in 6 (32%) of 19 with DNMT3AMUT and 74 (20%) of 374 with PHF6WT/DNMT3AWT (p < .01). The specific molecular signatures sustained their significant predictive performance in the context of the CMML‐specific molecular prognostic model (CPSS‐mol). PHF6MUT identifies a unique subset of patients with CMML characterized by thrombocytopenia, higher prevalence of LoY, and superior prognosis.
Clinicopathologic correlates and prognostic impact of lymphoid aggregates in patients with myelodysplastic syndromes
Baranwal, Anmol , Shah, Meera , Shi, Min , Reichard, Kaaren K. , Gangat, Naseema , Patnaik, Mrinal M. , Begna, Kebede H. , Litzow, Mark R. , Tefferi, Ayalew , Al‐Kali, Aref , Mangaonkar, Abhishek A. , Shah, Mithun V , Greipp, Patricia, Shi, Min , Gangat, Naseema , Alkhateeb, Hassan B , Tefferi, Ayalew , Al-Kali, Aref , Mangaonkar, Abhishek A. , Baranwal, Anmol , Greipp, Patricia T. , Jevremović, Dragan , Alkhateeb, Hassan B. , Hogan, William J.

British Journal of Haematology | July 31, 2024 | Volume: 205 | Issue: 4 | Pages: 1627-1631

10.1111/bjh.19677 Get It

Risk prediction for clonal cytopenia: multicenter real-world evidence
Xie, Zhuoer , Komrokji, Rami S. , Al‐Ali, Najla, Regelson, Alexandra, Geyer, Susan, Patel, Anand , Saygin, Caner , Zeidan, Amer M. , Mendez, Lourdes , Coombs, Catherine C. , Madanat, Yazan F. , Chung, Stephen S. , Badar, Talha , Foran, James M. , Tsai, Charlton , Amanam, Idoroenyi , Deeg, H. Joachim , Adès, Lionel, Osman, Afaf E.G. , Dinner, Shira, Chandhok, Namrata S. , Soong, Deborah, Brunner, Andrew M. , Ferrari, Jacqueline, Pozzi, Sara , Padron, Eric , Patnaik, Mrinal M. , Al‐Kali, Aref , Adès, Lionel , Komrokji, Rami S , Mendez, Lourdes , Zeidner, Joshua F , Madanat, Yazan , Badar, Talha , Griffiths, Elizabeth A. , Al Malki, Monzr M , Lai, Catherine , Arana Yi, Cecilia , Osman, Afaf E G , Abaza, Yasmin , Taylor, Justin , Chandhok, Namrata , Carraway, Hetty E. , Elena, Chiara , Gallì, Anna , Patnaik, Mrinal , Malcovati, Luca , Savona, Michael R , Al-Kali, Aref , Patel, Anand , Xie, Zhuoer , Zeidan, Amer M , Bewersdorf, Jan Philipp , Kishtagari, Ashwin , Zeidner, Joshua F. , Desai, Pinkal , Malki, Monzr M. Al , Lai, Catherine , Yi, Cecilia Arana , Abaza, Yasmin , Singh, Abhay , Malcovati, Luca , Savona, Michael R.

Blood | July 12, 2024 | Volume: 144 | Issue: 19 | Pages: 2033-2044

10.1182/blood.2024024756 Get It

Abstract Clonal cytopenia of undetermined significance (CCUS) represents a distinct disease entity characterized by myeloid-related somatic mutations with a variant allele fraction of ≥2% in individuals with unexplained cytopenia(s) but without a myeloid neoplasm (MN). Notably, CCUS carries a risk of progressing to MN, particularly in cases featuring high-risk mutations. Understanding CCUS requires dedicated studies to elucidate its risk factors and natural history. Our analysis of 357 patients with CCUS investigated the interplay between clonality, cytopenia, and prognosis. Multivariate analysis identified 3 key adverse prognostic factors: the presence of splicing mutation(s) (score = 2 points), platelet count of &lt;100 × 109/L (score = 2.5), and ≥2 mutations (score = 3). Variable scores were based on the coefficients from the Cox proportional hazards model. This led to the development of the clonal cytopenia risk score (CCRS), which stratified patients into low- (score of &lt;2.5 points), intermediate- (score of 2.5 to &lt;5), and high-risk (score of ≥5) groups. The CCRS effectively predicted 2-year cumulative incidence of MN for low- (6.4%), intermediate- (14.1%), and high-risk (37.2%) groups, respectively, by the Gray test (P &lt; .0001). We further validated the CCRS by applying it to an independent CCUS cohort of 104 patients, demonstrating a c-index of 0.64 (P = .005) in stratifying the cumulative incidence of MN. Our study underscores the importance of integrating clinical and molecular data to assess the risk of CCUS progression, making the CCRS a valuable tool that is practical and easily calculable. These findings are clinically relevant, shaping the management strategies for CCUS and informing future clinical trial designs.
Cardiac events in newly diagnosed acute myeloid leukaemia during treatment with venetoclax + hypomethylating agents
Johnson, Isla McKerrow , Karrar, Omer , Rana, Masooma , Iftikhar, Moazah, Chen, Sunny , Saliba, Antoine N. , Al‐Kali, Aref , Begna, Kebede H. , Litzow, Mark R. , Patnaik, Mrinal M. , Pardanani, Animesh , Hermann, Joerg, Tefferi, Ayalew , Gangat, Naseema , Saliba, Antoine N. , Johnson, Isla M, Saliba, Antoine N , Al-Kali, Aref , Alkhateeb, Hassan B , Shah, Mithun V , Pardanani, Animesh , Tefferi, Ayalew , Gangat, Naseema , Saliba, Antoine N , McCullough, Kristen , Alkhateeb, Hassan B. , Hogan, William J. , Shah, Meera

British Journal of Haematology | February 5, 2024 | Volume: 204 | Issue: 4 | Pages: 1232-1237

10.1111/bjh.19325 Get It

SummaryAmong 301 newly diagnosed patients with acute myeloid leukaemia receiving venetoclax and a hypomethylating agent, 23 (7.6%) experienced major cardiac complications: 15 cardiomyopathy, 5 non‐ST elevation myocardial infarction and/or 7 pericarditis/effusions. Four patients had more than one cardiac complication. Baseline characteristics included median age ± interquartile range; 73 ± 5 years; 87% males; 96% with cardiovascular risk factors; and 90% with preserved baseline ejection fraction. In multivariate analysis, males were more likely (p = 0.02) and DNMT3A‐mutated cases less likely (p < 0.01) to be affected. Treatment‐emergent cardiac events were associated with a trend towards lower composite remission rates (43% vs. 62%; p = 0.09) and shorter survival (median 7.7 vs. 13.2 months; p < 0.01). These observations were retrospectively retrieved and warrant further prospective examination.
TP53 variant allele frequency and therapy‐related setting independently predict survival in myelodysplastic syndromes with del(5q)
Tefferi, Ayalew , Fleti, Farah, Ali, Najla H. Al, Al‐Kali, Aref , Begna, Kebede H. , Foran, James M. , Badar, Talha , Khera, Nandita , Shah, Meera , Hiwase, Devendra , Padron, Eric , Sallman, David A. , Pardanani, Animesh , Reichard, Kaaren K. , He, Rong , Gangat, Naseema , Chan, Onyee , Al-Kali, Aref , Foran, James M , Badar, Talha , Shah, Mithun V , Hiwase, Devendra , Sallman, David A , Pardanani, Animesh , Arber, Daniel A , He, Rong , Gangat, Naseema , Komrokji, Rami S , Arber, Daniel A. , Orazi, Attilio , Ketterling, Rhett P. , Komrokji, Rami S.

British Journal of Haematology | December 12, 2023 | Volume: 204 | Issue: 4 | Pages: 1243-1248

10.1111/bjh.19247 Get It

SummaryAmong 210 patients with myelodysplastic syndromes (MDSs) with del(5q), molecular information was available at diagnosis or at least 3 months before leukaemic transformation in 146 cases. Multivariate analysis identified therapy‐related setting (p = 0.02; HR 2.3) and TP53 variant allele frequency (VAF) ≥22% (p < 0.01; HR 2.8), but not SF3B1 mutation (p = 0.65), as independent risk factors for survival. Median survival was 11.7 versus 4 years (5/10‐year survival 73%/52% vs. 42%/14%) in the absence (N = 112) versus presence (N = 34) of ≥1 risk factors; leukaemia‐free survival was affected by TP53 VAF ≥22% (p < 0.01). Such information might inform treatment decision‐making in MDS‐del(5q) regarding allogeneic stem cell transplant.
Venetoclax plus hypomethylating agents in DDX41‐mutated acute myeloid leukaemia and myelodysplastic syndrome: Mayo Clinic series on 12 patients
Nanaa, Ahmad , He, Rong , Foran, James M. , Badar, Talha , Gangat, Naseema , Pardanani, Animesh , Litzow, Mark R. , Patnaik, Mrinal M. , Al‐Kali, Aref , Al-Kali, Aref , Alkhateeb, Hassan B , Nanaa, Ahmad , Badar, Talha , Hogan, William J. , Alkhateeb, Hassan B.

British Journal of Haematology | September 15, 2023 | Volume: 204 | Issue: 1 | Pages: 171-176

10.1111/bjh.19105 Get It

SummaryVenetoclax (VEN) is an FDA‐approved selective inhibitor of B‐cell leukaemia/lymphoma‐2 (BCL‐2), used for treating elderly or unfit acute myeloid leukaemia (AML) patients unable to undergo intensive chemotherapy. Combining VEN with hypomethylating agents (HMAs) has shown impressive response rates in high‐risk myelodysplastic syndromes (MDS) and relapsed/refractory AML. However, the efficacy of VEN and HMAs in treating DDX41‐mutated (mDDX41) MDS/AML patients remains uncertain. Despite the favourable prognostic nature of mDDX41 MDS/AML patients, there is a lack of clinical experience regarding their response to different treatment regimens, leading to an unknown optimal therapeutic approach.
The clinical and molecular spectrum of ETV6 mutated myeloid neoplasms
Gurney, Mark E. , Chekkaf, Ismahene, Baranwal, Anmol , Basmaci, Rami, Katamesh, Bahga , Greipp, Patricia T. , Foran, James M. , Badar, Talha , Mangaonkar, Abhishek A. , Begna, Kebede H. , Gangat, Naseema , Patnaik, Mrinal M. , Litzow, Mark R. , Viswanatha, David S., He, Rong , Al‐Kali, Aref , Gurney, Mark , Greipp, Patricia, Shah, Mithun V , He, Rong , Al-Kali, Aref , Badar, Talha , Baranwal, Anmol , Greipp, Patricia T , Shah, Meera , Alkhateeb, Hassan B.

British Journal of Haematology | May 5, 2023 | Volume: 202 | Issue: 2 | Pages: 279-283

10.1111/bjh.18850 Get It

AbstractETV6 mutations are rare but recurrent somatic events in myeloid neoplasms and are negatively prognostic in myelodysplastic syndrome. We set out to examine the clinical and molecular characteristics of patients undergoing investigation for myeloid neoplasms, found to have deleterious ETV6 mutations. ETV6 mutations occurred in 33 of 5793 (0.6%) cases investigated and predominantly in high‐risk disease entities including MDS with increased blasts, primary myelofibrosis and AML, myelodysplasia‐related. In three cases, isolated iso (17q) karyotype was concurrently detected, an otherwise rare karyotype in myeloid neoplasms. ETV6 mutations were frequently subclonal and never occurred as an isolated abnormality with ASXL1 (n = 22, 75%), SRSF2 (n = 14, 42%) and SETBP1 (n = 11, 33%) the predominant co‐mutations. Restricting to patients with MDS, higher rates of ASXL1, SETBP1, RUNX1 and U2AF1 mutations occurred in ETV6 mutated cases, relative to a consecutive control cohort with wild‐type ETV6. The median OS of the cohort was 17.5 months. This report highlights the clinical and molecular associations of somatic ETV6 mutations in myeloid neoplasms, suggests their occurrence as a later event, and proposes further translational research questions for their role in myeloid neoplasia.
Sodium‐glucose co‐transporter‐2 inhibitor use and JAK2 unmutated erythrocytosis in 100 consecutive cases
Gangat, Naseema , Abdallah, Mostafa, Szuber, Natasha , Saliba, Antoine N. , Al‐Kali, Aref , Begna, Kebede H. , Pardanani, Animesh , Tefferi, Ayalew , Saliba, Antoine N. , Saliba, Antoine N , Al-Kali, Aref , Begna, Kebede , Pardanani, Animesh , Tefferi, Ayalew , Saliba, Antoine N , Szuber, Natasha , Alkhateeb, Hassan B.

American Journal of Hematology | April 19, 2023 | Volume: 98 | Issue: 7 | Pages: No page available

10.1002/ajh.26933 Get It