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Zepeda, Cinthya Mendoza

Mayo Clinic

Mayo Clinic

Citations 6

Pirtobrutinib versus usual care for patients with richter transformation of chronic lymphocytic leukemia: Inverse probability of treatment weighting-based analysis of BRUIN trial and mayo observational cohort
Hampel, Paul J. , Schwager, Susan M., Hanson, Curtis A. , King, Rebecca, Zepeda, Cinthya Mendoza, Koehler, Amber B. , Behnken, Amy, Coddington, Catherine, Wang, Yucai , Rabe, Kari G. , Roeker, Lindsey E. , Zhou, Jihao , Atallah‐Yunes, Suheil Albert , Shi, Min , Kenderian, Saad S. , Muchtar, Eli , Kay, Neil E. , Coddington, Catherine, Slager, Susan L. , Parikh, Sameer A.

Blood | December 5, 2025 | Volume: 146 | Issue: Supplement 1 | Pages: 5673-5673

10.1182/blood-2025-5673 Get It

Abstract Introduction: Pirtobrutinib, a highly selective non-covalent BTK inhibitor, demonstrated encouraging efficacy in Richter transformation (RT) of chronic lymphocytic leukemia (CLL) in the BRUIN trial (Wierda et al, Lancet Haematology, 2024). However, a control arm was not included in this phase 1/2 trial, and how pirtobrutinib compares to usual care is unknown. To address this gap of knowledge, we sought to compare efficacy outcomes in BRUIN to that in a control cohort consisting of RT patients treated with usual care at Mayo Clinic. Methods: The study was approved by the Mayo Clinic IRB. Patient-level data from BRUIN (n=79; investigator-assessed) were obtained from the study sponsor. Patients with histologically confirmed RT (large B-cell lymphoma) who received at least one line of therapy (n=230) were identified from the Mayo Clinic CLL Database. Multivariable logistic regression was employed to calculate propensity scores for baseline covariates (ie, age at RT treatment line, number of prior lines of CLL treatment [truncated at 3], number of prior lines of RT treatment [truncated at 3], and LDH). For each Mayo patient, propensity scores for each line of RT therapy were calculated, and the line with the highest propensity score was chosen as the index RT treatment line. Using the inverse probability treatment weighting (IPTW) methodology, individual weights were computed, and standardized mean differences (SMDs) were examined for each of the unadjusted and weighted baseline covariates to ensure that balance was obtained between BRUIN cases and Mayo controls. Overall survival (OS; the primary endpoint) and progression-free survival (PFS) were analyzed using unweighted and weighted Cox proportional hazards models. Unweighted and weighted overall response rates (ORRs) and complete response (CR) rates were analyzed using logistic regression. Results: The final analysis dataset contained 79 BRUIN cases (median age 67 [range 26-95], 66% male) and 204 Mayo controls (median age 69 [range 30-89], 74% male). The BRUIN cohort had more patients with ECOG PS ≥1 (61% vs 40%, p=0.001) and elevated LDH (81% vs 63%, p=0.003) than the Mayo cohort. The proportion of patients with TP53 aberration was not statistically different in both cohorts (57% vs. 44%, p=0.15). The index line of RT treatment in the Mayo cohort included chemoimmunotherapy (n=167, 80%) and novel agent-based therapy (eg, cBTKi, venetoclax, PI3Ki, immune checkpoint inhibitor, etc; n=42, 20%). Median lines of prior CLL therapy were 2 (IQR 1-4) vs 1 (IQR 0-3) in the BRUIN and Mayo cohorts, respectively; median lines of prior RT therapy were 2 (IQR 1-2) vs 0 (IQR 0-2). The SMDs of the weighted baseline factors met pre-determined criteria (-0.25≤SMD≤0.25), indicating that balance between the two cohorts was achieved. The median follow-up was 18.3 months (range 0.7-32.9) in the BRUIN cohort and 122.8 months (range 0-280.2) in the Mayo cohort. The unweighted median OS was 12.5 months (95% CI 7.0-20.6) in the BRUIN cohort and 5.7 months (95% CI 3.9-10.7) in the Mayo cohort. The unweighted HR was 0.76 (95% CI 0.54-1.07, p=0.12). After IPTW, the weighted HR was 0.63 (95% CI 0.50-0.78, p<0.001), significantly favoring the BRUIN cohort. The unweighted median PFS was 3.6 months (95% CI 2.8-5.1) in the BRUIN cohort and 3.1 months (95% CI 2.5-4.3) in the Mayo cohort. The unweighted HR was 0.98 (95%CI 0.72-1.34, p=0.92). After IPTW, the weighted HR was 0.78 (95% CI 0.64-0.95, p=0.01), again favoring the BRUIN cohort. Response was evaluable/available in 69 patients in BRUIN and 182 patients in Mayo cohort. The unweighted ORR was 58% vs 53% in BRUIN and Mayo cohorts, respectively (OR=0.83, 95% CI 0.47-1.45, p=0.51), and the CR rate was 16% vs 36% (OR=2.94, 95% CI 1.43-5.88, p=0.003). After IPTW, the weighted OR was 0.65 (95% CI 0.45-0.93, p=0.02) for ORR, favoring the BRUIN cohort, and 1.89 (95%CI 1.23-2.86, p=0.02) for CR rate, favoring the Mayo cohort. Conclusions: This individual patient-level IPTW-based analysis demonstrated that single agent pirtobrutinib is associated with improved OS, PFS, and ORR compared to usual care in patients with RT. These results support the choice of pirtobrutinib over traditional therapies for RT. Although these results are encouraging, the durability of response to pirtobrutinib remains suboptimal. Ongoing trials and other future research will evaluate the efficacy of pirtobrutinib in combination with other treatments in this setting.
Clinical NGS detection of TP53 mutations in chronic phase primary myelofibrosis: Comparative analyses of genotype and prognosis
Tefferi, Ayalew , Bashir, Yassin, Abdelrheem, Ahmed, Abdelmagid, Maymona, Viswanatha, David S., He, Rong , Reichard, Kaaren K. , Zepeda, Cinthya Mendoza, Kharfan‐Dabaja, Mohamed A. , Yi, Cecilia Y. Arana , Palmer, Jeanne , Al‐Kali, Aref , Mangaonkar, Abhishek A. , Vannucchi, Alessandro M., Pardanani, Animesh , Gangat, Naseema , Yi, Cecilia Arana , Hogan, William J. , Guglielmelli, Paola , Hiwase, Devendra , Shah, Meera

Blood | December 5, 2025 | Volume: 146 | Issue: Supplement 1 | Pages: 3798-3798

10.1182/blood-2025-3798 Get It

Abstract Background A previous multicenter study of patients with TP53-mutated myeloproliferative neoplasms showed a significantly shorter survival in chronic phase myelofibrosis (MF-CP) that included primary (PMF) and secondary MF and was mostly based on research-based mutation screening and was not systematically controlled for patients without TP53 mutations (AJH 2025;100:552). The objective of the current study was to examine the prognostic impact of TP53 mutations (VAF ≥2%) that were discovered during clinical NGS testing among consecutive patients with PMF-CP. Impact on overall (OS) and leukemia-free (LFS) survival was analyzed in the context of other genetic risk factors and calculated from the time of mutation detection. Methods The current retrospective study includes consecutive patients with PMF-CP who underwent clinical NGS testing at the Mayo Clinic between 2015 and 2025. Diagnoses of PMF-CP and leukemic transformation (LT) were retrospectively fitted to be in accordance with the International Consensus Classification criteria (Blood 2022;140:1200). Mutation and cytogenetic analyses were performed according to institutional protocols for clinical use and reported in conformity with international guidelines. OS and LFS analyses were censored for treatment with allogeneic stem cell transplantation (ASCT) and calculated from the date of NGS. Conventional statistical methods were utilized (JMP Pro 17.1.0, SAS Institute, Cary, NC, USA). Results A total of 633 patients with PMF-CP underwent clinical NGS testing prior to LT and prior to ASCT (median age 65 years; males 59%). Median interval from initial diagnosis/referral to NGS testing was 2 months; 357 (56%), 392 (62%), and 429 (68%) patients had NGS performed within 3, 6 and 12 months of diagnosis, respectively. Risk distribution according to the dynamic International Prognostic Scoring System (DIPSS; Blood 2010;115:1703) were low (19%), intermediate-1 (44%), intermediate-2 (31%), or high (6%). TP53 mutations (TP53MUT) with variant allele frequency (VAF) of ≥2% were detected in 28 (4.4%) patients with a median VAF of 25.3% (range 2.4-85; ICC-defined multihit 43%). Patients with TP53MUT were more likely to harbor IDH2MUT (14% vs. 3%; p<0.01), EZH2MUT (14% vs. 4%; p=0.03), and unfavorable karyotype (36% vs. 19%; p=0.047) and less likely to harbor CALR type 1/like (4% vs. 18%; p=0.02) and SF3B1MUT (0% vs. 6%; p=0.07). The association with unfavorable karyotype was mainly driven by multihit configuration. No significant associations with clinical features were apparent. At a median follow-up of 40 months for surviving patients, 157 (25%) deaths, 48 (8%) LTs and 135 (21%) ASCTs were documented. A near-two-fold lower, albeit not statistically significant OS was observed in the presence of TP53MUT (median 123 vs. 228 months; HR 1.9, 95% CI 0.94-3.7; p=0.074); the difference reached significance for multihit TP53MUT (median 81 months; HR 3.6, 1.7-7.7; p<0.01) but not for non-multihit TP53MUT (median not reached; HR 0.7, 0.2-2.8; p=0.6), both compared to TP53WT (median 228 months). The significant impact of multihit TP53MUT on OS was confirmed in multivariable analysis (MVA) that included other high molecular risk (HMR) mutations and unfavorable karyotype: multihit TP53MUT (HR 2.5, 1.1-5.5; p=0.02), SRSF2MUT (2.4, 1.5-3.8; p<0.01), ASXL1MUT (1.8, 1.2-2.6; p<0.01), U2AF1MUT-Q157 (4.8, 2.6-8.6; p<0.01), and absence of CALR type 1/like (4.0, 2.0-7.8; p<0.01); additional prognostic contribution was not evident for unfavorable karyotype (p=0.17), EZH2MUT (p=0.3), IDH1MUT (p=0.6), IDH2MUT (p=0.7), or any other HMR mutation. Multihit TP53MUT was also associated with inferior LFS (10-year risk 62% vs. 32% for non-multihit TP53MUT vs. 15% for TP53WT; p=0.03) but significance was lost during MVA that included SRSF2MUT, which was the only HMR mutation showing a significant effect on LFS (HR 5.0, 2.5-9.8; p<0.01). Post-ASCT survival among 135 transplanted patients was significantly shorter for patients with multihit TP53MUT (N=4; median 5 months) vs. those with non-multihit TP53MUT (N=7; median not reached) vs. patients with TP53WT (N=124; median not reached) [p=0.02]. Conclusion The current study implicates multihit TP53MUT as an HMR mutation-independent prognostic factor for OS in PMF-CP. By contrast, prognosis in PMF-CP patients with non-multihit TP53MUT was more likely to be influenced by other HMR mutations, as was the case for those with TP53WT.
Integrated prognostic model for TP53‑mutated myeloid neoplasms across all myeloid neoplasm subtypes
Tessier, Steven , He, Rong , Abdelmagid, Maymona, Rud, Danielle, Al‐Kali, Aref , Gangat, Naseema , Patnaik, Mrinal M. , Mangaonkar, Abhishek A. , Anani, Hosein, Punwani, Nathan , Foran, James M. , Gnanamanickam, Emmanuel , Ladon, Dariusz, Begna, Kebede, Matin, Aasiya , Reichard, Kaaren K. , Zepeda, Cinthya Mendoza, Tefferi, Ayalew, Hiwase, Devendra , Hung, Kevin , Maritz, Michelle F. , Anani, Hosein, Saliba, Antoine N. , Chen, Dong , Alkhateeb, Hassan B. , Kutyna, Monika , Scott, Hamish S. , Hefazi, Mehrdad , Hahn, Christopher N , Hogan, William J. , Orazi, Attilio , Arber, Daniel A. , Kok, Chung Hoow , Shah, Meera , Tefferi, Ayalew

Blood | December 5, 2025 | Volume: 146 | Issue: Supplement 1 | Pages: 2087-2087

10.1182/blood-2025-2087 Get It

Abstract Background: TP53-mutated myeloid neoplasms (MNs) represent one of the most lethal subgroups of blood cancers. The World Health Organization (WHO-5) recognize TP53-mutated (TP53mut) myelodysplastic syndrome (MDS) and International Consensus Classification (ICC) recognize TP53mut MDS and acute myeloid leukaemia (AML) as distinct disease entities, acknowledging their dismal prognosis and the urgent need for novel therapeutic strategies. However, key discrepancies exist between the classifications, creating uncertainty in diagnosis, influencing therapeutic decisions, and complicating clinical trial enrolment for patients with uniformly poor survival. Importantly, neither classifications included TP53-mutated myelofibrosis (MF), other myeloproliferative neoplasms (MPN), and MDS/MPN overlap syndromes, despite growing evidence that these cases carry similar adverse outcomes. To address these critical gaps, we conducted a comprehensive analysis across the full spectrum of TP53-mutated MN. Methods: We included TP53mut cases with variant allele frequency (VAF ≥2%) of AML, MDS, MDS/MPN overlap, myelofibrosis and other MPN managed at the Mayo clinic (Rochester, USA) and Local Health Network in South Australia (Australia). Cases were classified according to the revised 4th edition WHO classification (WHO-4R). Biallelic TP53 loss was defined as: (i) ≥2 mutations with VAF ≥2%; (ii) single TP53mut with VAF ≥2% plus 17p loss on karyotype, FISH, or SNP array; or (iii) single TP53mut with VAF ≥50% with or without 17p loss. Monoallelic loss was defined as a single TP53mut with VAF <50% without 17p loss or copy neutral loss of heterozygosity. The primary endpoint was overall survival (OS) from diagnosis, censored at allogeneic transplantation. Conditional inference tree analysis was performed to define the effect of individual predictors on OS. Results: We identified 853 TP53mutMN cases including WHO-4R-defined AML (BM/PB blasts ≥20%, n=314; 36.8%), MDS with excess blasts-2 (EB-2; BM 10–19% or PB 5–19%, n=129; 15.1%), MDS-EB-1 (BM 5–9% or PB 2–4%, n=100; 11.7%), and MDS with low blasts (LB; BM <5% and PB <1%, n=228; 26.7%). MF included chronic phase (MF-CP, n=48; 5.6%), accelerated phase (MF-AP, n=7; 0.8%), and blast phase (MF-BP, n=17; 2.0%). Additional cases comprised other MPN-chronic phase (n=3, 0.4%) and MDS/MPN overlap syndromes (n=7, 0.8%). Of 848 evaluable TP53mut MN, 616 (72.6%) harbored biallelic TP53 loss and 232 (27.4%) had monoallelic loss, with 42.4% (n=98) of monoallelic cases harboring a complex karyotype (CK). Biallelic loss was highly prevalent in AML (83.1%), MDS (70.4%), and MDS/MPN overlap (71.4%), but was less frequent in cases with MPN (33.3%) and MF-chronic phase (25.0%). Across the spectrum, the frequency of biallelic loss increased stepwise with disease progression, rising from MDS-LB (62.8%) to MDS-EB1 (76.0%), MDS-EB2 (79.5%), AML (83.1%), and MF-AP/BP (79.2%) (P<0.0001). In multivariable analysis, WHO-4R category, TP53mut VAF, biallelic loss and CK were independent predictors of poor survival in TP53mut MN. Conditional inference tree analysis stratified the cohort into seven prognostic groups with distinct median OS: (1) AML, MF-BP/AP, and MDS/MPN overlap regardless of mono/biallelic and CK status (n=335, 39.7%; median OS 4.0 months); (2) MDS-EB1/EB2 with biallelic loss or monoallelic plus CK (n=212, 25.1%; 7.2 months); (3) MDS-LB, MF-CP and MPN with CK (n=156, 18.5%, OS 10.2 months); (4) biallelic MDS-LB (n=28, 3.3%; OS 15.6 months), (5) monoallelic MDS-EB1/EB2 without CK (n=20, 2.4%; OS 26.2 months), (6) monoallelic MDS-LB without CK (n=57, 6.7%; OS 33.4 months), and (7) MF-CP and other MPN without CK (n=36, 4.3%; OS 37.0 months). This analysis defines a clear stepwise risk gradient, identifying subsets with extremely poor prognosis versus a relatively indolent disease. Conclusions: This is the first study to evaluate the prognostic impact of TP53mut MN across the entire MN spectrum, providing a framework for future refinement of TP53-driven disease classification. Key findings include: (i) MF-AP/BP and MDS/MPN overlap exhibit survival outcomes as dismal as AML, irrespective of the TP53 allele status; and (ii) complex karyotype is a surrogate for “biallelic equivalent”, refining risk interpretation in monoallelic cases. Overall, our study defines seven prognostic subgroups spanning all TP53mut MN, offering a foundation for risk-adapted clinical trial design and future classification updates.
Venetoclax-obinutuzumab in frontline and R/R CLL: Outcomes compared to age- and sex-matched general population
Pomerantz, Lauren , Hampel, Paul J. , Bailen, Rachel, Koehler, Amber B. , Coddington, Catherine, Behnken, Amy, Leis, José F., Schwager, Susan M., Achenbach, Sara J., Zepeda, Cinthya Mendoza, Hanson, Curtis A. , Parikh, Sameer A. , Rabe, Kari G. , Roeker, Lindsey E. , Kenderian, Saad S. , Kay, Neil E. , Coddington, Catherine, Hilal, Talal , Tsang, Mazie , Parrondo, Ricardo D , Shi, Min , Slager, Susan L. , Braggio, Esteban , Wang, Yucai

Blood | December 5, 2025 | Volume: 146 | Issue: Supplement 1 | Pages: 3905-3905

10.1182/blood-2025-3905 Get It

Abstract Background: The synergistic mechanisms of BCL-2 inhibitors and CD20-directed antibodies in the treatment of chronic lymphocytic leukemia/small lymphocytic lymphoma (CLL/SLL) often lead to deep and durable responses. Although the use of venetoclax-obinutuzumab (Ven-O) in the frontline setting (1L) for CLL/SLL has led to a paradigm shift in the disease management, there are limited data on its efficacy in the relapsed/refractory (R/R) setting. In this study, we evaluated the efficacy and safety of Ven-O in both 1L and R/R CLL among patients treated outside the context of clinical trials at our institution. Methods We used the Mayo Clinic CLL Database to identify patients with CLL who were treated with Ven-O, both in 1L and R/R settings. Patients seen at Mayo Clinic Rochester between 2017 and 2025 were included. Overall survival (OS) was calculated from date of Ven-O initiation until last known alive date. Event-free survival (EFS) was calculated from date of Ven-O initiation until the next line of treatment or last known alive date. Kaplan-Meier methods estimated EFS and OS rates at 1, 3, and 5 years. Cox proportional hazards models were used to explore the association between baseline factors and EFS and OS; results are reported as hazard ratios (HR) and 95% confidence intervals (95%CI). Finally, we compared the OS to the age- and sex-matched general population of the state of Minnesota. Results A total of 154 patients (91 1L, 63 R/R) were included in the study. The median age was 68 years (69 1L, 68 R/R), and 68% were male (64% 1L, 73% R/R). Overall, TP53 disruptions (either del17p by FISH or TP53 mutation) were noted in 22 (15%) patients (9% 1L, 23% R/R). CLL FISH findings demonstrated del11q in 24 (19%) patients (19% 1L, 18% R/R), del13q in 46 (36%) patients (36% 1L, 36% R/R), and trisomy 12 in 21 (16%) patients (16% 1L, 18% R/R). IGHV genes were unmutated in 95 (68%) patients (60% 1L, 80% R/R). The CLL-IPI risk score was high in 54 (51%) patients (51% 1L, 53% R/R) and very-high in 18 (17%) patients (8% 1L, 34% R/R). A total of 121 (89%) patients completed planned treatment (1 year of venetoclax in 73 [90%] 1L and 2 years of venetoclax in 48 [87%] R/R). Median follow-up for the entire cohort was 1.8 years (2.2 1L, 1.5 R/R). Neither median EFS nor OS was reached for the overall cohort or within the 1L and R/R subgroups. The 1, 3, and 5-year EFS estimates for the overall cohort were 91% (86-96%), 85% (78-92%), and 67% (51-89%), respectively; corresponding EFS values for the 1L subgroup were 95% (91-100%), 89% (82-98%), and 67% (47-95%), respectively; and for the R/R subgroup were 85% (76-95%), 77% (65-92%), and 77% (65-92%), respectively. The 1, 3, and 5-year OS estimates were 98% (95-100%), 95% (91-99%), and 88% (76%-100%), respectively; corresponding OS values for the 1L subgroup were 99% (96-100%), 97% (94-100%), and 97% (94-100%) and for the R/R subgroup were 96% (91-100%), 91% (82-100%), and 61% (27-100%), respectively. Univariable analyses showed that TP53 disruption was associated with shorter EFS (HR 3.8, 95%CI 1.4-10.2, p=0.01), although IGHV mutation status was not associated with shorter EFS. A higher level of serum beta-2 microglobulin (HR 1.27, 95%CI 1.01-1.59, p=0.04) and R/R status (HR 4.9, 95%CI 0.9-25.8, p=0.06) were associated with a shorter OS. Interestingly, TP53 mutation status and IGHV mutation status were not associated with inferior OS. There was no difference in the observed and expected OS for both the 1L (p-0.23) and R/R (p=0.14) Ven-O treated cohorts compared to the age- and sex-matched general population of the state of Minnesota. Conclusions Our study shows that Ven-O is a well-tolerated regimen with demonstration of durable treatment responses both in the 1L and R/R groups, when used outside the context of a clinical trial. To the best of our knowledge, these data for the first time demonstrate no difference in OS of patients treated with Ven-O compared to age- and sex-matched general population, in both the 1L and R/R settings.
Cyclin D1 beyond the cell cycle: A new role in t(11;14) multiple myeloma
Yan, Huihuang, Shivaram, Suganti, Tang, Hongwei , Notch, Samuel, Hans, Anderson, Tian, Shulan , Howe, Michael J. A., Zepeda, Cinthya Mendoza, Bergsagel, P. Leif , Kumar, Shaji, Rico, Daniel , Mikulášová, Aneta , Tang, Hongwei, Lehman, Stacey L. , Howe, Michael, Bolarinwa, Abiola , Kaddoura, Marcella , Fonseca, Rafaël , Bergsagel, P. Leif , Braggio, Esteban , Gonsalves, Wilson I. , Rajkumar, S. Vincent , Kumar, Shaji , Maura, Francesco , WALKER, BRIAN J. , Baughn, Linda B.

Blood | December 4, 2025 | Volume: 146 | Issue: Supplement 1 | Pages: 3939-3939

10.1182/blood-2025-3939 Get It

Abstract Cyclin D1, encoded by CCND1, is a cell cycle regulator, overexpressed in ~15% of multiple myeloma (MM) cases via CCND1::IGH super-enhancer juxtaposition through t(11;14). Cyclin D1 also plays a non-canonical role in transcriptional regulation, but in t(11;14) MM its function in gene regulation remains undefined. We investigated the global transcriptional and epigenomic consequences of CCND1overexpression in t(11;14) MM. To define a CCND1 signature, RNA-seq from two independent primary MM patient cohorts, CoMMpass and Mayo, was utilized to compare high CCND1 t(11;14) cases (≥300 transcripts-per-million [TPM], n=271) vs. low CCND1 hyperdiploid cases (<30 TPM, n=233). Two CCND1 knockout (KO) clones in t(11;14) MM U266B1 were also generated by CRISPR/Cas9, introducing a frameshift insertion (A) after chr11:69641478 (hg38) in exon 1. ATAC-seq and ChIP-seq (H3K4me3, H3K4me1, and H3K27ac) were performed in duplicates, and RNA-seq in triplicates in U266B1 wild-type (WT) and KO. Libraries were sequenced on Illumina NextSeq 2000 (2x51 bp for ChIP/ATAC, 2x150 bp for RNA-seq). Reads were mapped to hg38 by BWA (ChIP/ATAC) or STAR (RNA-seq), peaks called by MACS2 (FDR< 0.01), peak and gene raw counts estimated by featureCounts. Differential peaks (fold-change ≥1.5) and differentially expressed genes (fold-change ≥2) were identified by edgeR (FDR<0.05), including peaks detected in ≥2 samples and genes with TPM ≥0.1 in ≥1 sample. Interactions between promoters and distal regulatory regions were identified using publicly available chromatin interaction data in blood cell types. Pathway analysis was performed using Enrichr. Co-immunoprecipitation was performed in t(11;14) KMS12BM cells. Differential analysis comparing CCND1-high t(11;14) and CCND1-low MM cases in the two patient cohorts identified 21 upregulated and 21 downregulated genes associated with CCND1 expression which were also captured in the wild-typevs. CCND1 KO U266 cells. Enriched pathways (p<0.05) included Notch signaling, early/late estrogen response, epithelial-mesenchymal transition and reduced mitotic spindle and myogenesis. Dysregulated genes included those related to apoptosis, ubiquitin-proteosome, extracellular matrix, adhesion, and immune response, demonstrating a broader role for cyclin D1 in MM beyond cell cycle control. To explore the epigenomic basis of this transcriptional regulation, for each of the 42 differentially expressed genes we examined the changes of histone marks and chromatin accessibility in promoter and the interacting distal regulatory regions in the U266 KO model. Ten of the 21 genes upregulated in CCND1-high (downloaded in KO; e.g., argininosuccinate synthase 1 [ASS1], PMAIP1, MYEOV, CCR7, and DTX1) and 12 of the 21 genes downregulated in CCND1-high (upregulated in KO; e.g., UACA, RASAL2, PTPRZ1, PPT2, and IL23R) showed concordant changes in histone marks and/or chromatin accessibility, predominantly in distal regulatory regions, suggesting a chromatin-mediated mechanism of gene regulation by cyclin D1. The most prominent changes involved H3K27ac, a mark defining active enhancers. As H3K27ac is deposited by histone acetyltransferases CBP, we tested for the possible cyclin D1-CBP interaction. Co-IP confirmed this interaction, suggesting a role for this complex in chromatin remodeling and transcriptional control in t(11;14) MM. One gene notably upregulated in association with CCND1 is ASS1, which encodes a urea cycle enzyme responsible for endogenous arginine synthesis. Metabolomic studies demonstrated KO cells had elevated aspartate and citrulline and lowered arginine and ornithine compared to WT cells (p<0.01) demonstrating impaired urea cycle function. Further, KO cells displayed significantly reduced ASS1 protein expression, cell growth and S-phase entry compared to WT cells in arginine-replete conditions, with both WT and KO cell types further inhibited by arginine depletion (p<0.05). Together, a cyclin D1-associated gene signature was identified supporting its role in t(11;14) MM beyond the CDK4/6 mediated cell cycle control, including a role in metabolic plasticity and survival under arginine depleted conditions. These findings highlight cyclin D1 as a therapeutic vulnerability and open new avenues for personalized treatment strategies.
Myeloproliferative neoplasms-unclassifiable (MPN-U): A carefully curated series of 30 Mayo Clinic patients
Faldu, Priyansh, Fathima, Saubia, Reichard, Kaaren K. , He, Rong , Zepeda, Cinthya Mendoza, Pardanani, Animesh , Gangat, Naseema , Tefferi, Ayalew, Abdelaziz, Rania , Fathima, Saubia , Tefferi, Ayalew

Blood | December 4, 2025 | Volume: 146 | Issue: Supplement 1 | Pages: 7314-7314

10.1182/blood-2025-7314 Get It

Abstract Background Although myeloproliferative neoplasm-unclassifiable (MPN-U) stands as a distinct entity in the International Consensus Classification (ICC) for myeloproliferative neoplasms, its diagnosis and management remain challenging due to the overlapping clinico-pathological characteristics with other MPNs. In the current study, we describe a well-defined cohort of patients with MPN-U and compare their presentation and outcome with those of a separate cohort with essential thrombocythemia (ET). Methods Diagnostic criteria were according to the ICC (Blood 2022; 140:1200). Non-driver mutations were screened by next-generation sequencing (NGS) and were available for subsets of patients with MPN-U or ET. Conventional statistical methods were employed, using JMP Pro 18.0.0 software SAS Institute, Cary, NC, USA. Results Thirty Mayo Clinic patients who met the ICC criteria for MPN-U (median age 64 years; range 33-94; 60% males) and 658 with ET (median age 60 years; range 18-90; 36% males) were included in the current study. Table 1 outlines a comparative list of presenting characteristics (including mutations), clinical outcomes, and treatment details between patients with MPN-U vs. ET. JAK2 mutations were significantly more prevalent in MPN-U cohort (87% vs. 63% in ET; p<0.01) and CALR mutations less common (3% vs. 25%; p<0.01). Other somatic mutations, including ASXL1, SRSF2, and EZH2 were more frequently observed in the MPN-U group (p<0.05 in all). Abnormal karyotype was reported in 14% of patients with MPN-U vs. 8% with ET (p=0.3). Compared to patients with ET, those with MPN-U were more likely to be males (60% vs. 36%; p<0.01) and, as expected from disease presentation and indications for diagnostic work up of suspected cases, present with venous thrombosis (43% vs. 10%; p<0.01) and palpable splenomegaly (40% vs. 8.5%; p<0.01). Similarly, they were less likely to display thrombocytosis or leukocytosis (p<0.01 for both). Portal, superior mesenteric, and hepatic vein thromboses constituted 77% (vs. 27% in ET; p<0.01) of the venous events in MPN-U; in contrast, the incidences of pre-diagnosis arterial events were similar between the two groups (10% vs. 12%; p=0.7). At a median follow-up of 2.8 years in the MPN-U cohort, 6 (20%) deaths and 1 (3%) leukemic transformation were documented while 3 (10%) patients progressed to meet the diagnostic criteria for polycythemia vera. Four (13%) patients with MPN-U experienced venous thrombo-embolic events (VTEs) including 2 with recurrent VTEs, despite active therapy with systemic anticoagulation and aspirin. The ET cohort was followed for a median of 7.3 years with 161 (24%) deaths, 23 (3%) leukemic transformations, and 66 (10%) VTEs. Among the latter, 27 (41%) had recurrent episodes despite treatment with systemic anticoagulation, aspirin, and/or cytoreductive drugs. Notably, patients with MPN-U were less likely to receive aspirin and cytoreductive therapy during the clinical course (77% vs. 91% and 37% vs. 79%; p<0.01 for both, respectively). Long-term survival rates were similar between MPN-U and ET (15-year survival 70% vs. 65%; p=0.1). Consistent with previous associations seen in ET, patients with JAK2-mutated MPN-U were more likely to be males (58% vs. 30%; p<0.01, Table 2), and display a lower platelet and leukocyte count at the time of diagnosis (p<0.01 for both). These patients were also more likely to present with venous thrombosis (50% vs. 12% in JAK2 wild-type cases; p<0.01) and palpable splenomegaly (46% vs. 9%; p<0.01). Of note, the incidences of pre- and post-diagnosis arterial and post-diagnosis venous events were similar between JAK2-mutated MPN-U vs. JAK2-mutated ET patients (12% vs. 14%; p=0.7, 4% vs. 12.5%; p=0.1, and 15% vs. 12%, p=0.6, respectively). Similarly, long-term outcomes including deaths (15% vs. 26%; p=0.2), leukemic transformations (4% vs. 4%; p=0.9), and 15-year survival rates (78% vs. 60%; p=0.9) were also comparable between the two groups. Conclusion The findings from the current study were not unexpected and underline the ongoing challenges that face formal classification systems in formulating accurate diagnostic criteria for patients with MPN-U whose clinical presentation is biased by disease definitions. Regardless, it is comforting to document a favorable long-term outcome that appeared to be similar to that of ET while venous thrombosis remains a treatment challenge in both groups.