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9543 citation(s) found for "Yu, James B".

Sequencing and Resolution of Amplified Herpes Simplex Virus DNA with Intermediate Melting Curves as Genotype 1 or 2 by LightCycler PCR Assay
Issa, Nicolas C. , Espy, Mark J., Uhl, James R., Smith, Thomas F.

Journal of Clinical Microbiology | April 6, 2005 | Volume: 43 | Issue: 4 | Pages: 1843-1845

10.1128/jcm.43.4.1843-1845.2005 | PMID 15815006 Get It

ABSTRACT DNA from 101 specimens containing herpes simplex virus (HSV) produced atypical intermediate melting curves compared with those expected for HSV type 1 or HSV type 2 subsequent to real-time PCR. Nucleic acid sequence analysis of amplified target DNA revealed 1- or 3-bp polymorphisms in the probe region which allowed designation of these viruses as HSV genotype 1 or HSV genotype 2. These two subpopulations of HSV were also identified as HSV genotype 1 or HSV genotype 2 using another commercially available PCR method. Amplified HSV target DNA producing intermediate melting curves could be designated as HSV genotype 1 or HSV genotype 2 without performing sequencing or another PCR method with 96/101 (95%) specimens by adding known intermediate HSV DNA characteristic for the two subpopulations as controls.
Primary CNS Lymphoma of T-Cell Origin: A Descriptive Analysis From the International Primary CNS Lymphoma Collaborative Group
Shenkier, Tamara , Blay, Jean‐Yves , Poortmans, Philip , Thiel, Eckhard, Jahnke, Kristoph, Abrey, Lauren E. , Neuwelt, Edward A. , Tsang, Richard , Batchelor, Tracy T. , Ferreri, Andrés J.M. , O’Brien, Peter, Rubenstein, James L. , O’Neill, Brian Patrick , Harris, Nancy L. , Ponzoni, Maurilio , Connors, Joseph M. , Blay, Jean-Yves

Journal of Clinical Oncology | March 30, 2005 | Volume: 23 | Issue: 10 | Pages: 2233-2239

10.1200/jco.2005.07.109 | PMID 15800313 Get It

Purpose To describe the demographic and tumor related characteristics and outcomes for patients with primary T-cell CNS lymphoma (TPCNSL). Patients and Methods A retrospective series of patients with TPCNSL was compiled from twelve cancer centers in seven countries. Results We identified 45 patients with a median age of 60 years (range, 3 to 84 years). Twenty (44%) had Eastern Cooperative Oncology Group (ECOG) performance status (PS) of 0 or 1. Twenty-six (58%) had involvement of a cerebral hemisphere and sixteen (36%) had lesions of deeper sites in the brain. Serum lactate dehydrogenase was elevated in 7 (32%) of 22 patients, and CSF protein was elevated in 19 of 24 patients (79%) with available data. The median disease-specific survival (DSS) was 25 months (95% CI, 11 to 38 months). The 2- and 5-year DSS were 51% (95% CI, 35% to 66%) and 17% (95% CI, 6% to 34%), respectively. Univariate and multivariate analyses were conducted for age (≤ 60 v > 60 years), PS (0 or 1 v 2, 3, or 4), involvement of deep structures of the CNS (no v yes), and methotrexate (MTX) use in the primary treatment (yes v no). Only PS and MTX use were significantly associated with better outcome with hazard ratios of 0.2 (95% CI, 0.1 to 0.4) and 0.4 (95% CI, 0.2 to 0.8), respectively. Conclusion This is the largest series ever assembled of TPCNSL. The presentation and outcome appear similar to that of B cell PCNSL. PS 0 or 1 and administration of MTX are associated with better survival.
In Reply:
Patz, Edward F. , Swensen, Stephen J., Herndon, James E.

Journal of Clinical Oncology | March 30, 2005 | Volume: 23 | Issue: 10 | Pages: 2440-2441

10.1200/jco.2005.05.230 Get It

In Reply:
Patz, Edward F. , Swensen, Stephen J., Herndon, James E.

Journal of Clinical Oncology | March 18, 2005 | Volume: 23 | Issue: 9 | Pages: 2107-2108

10.1200/jco.2005.05.267 Get It

Characteristics of the audio sound generated by ultrasound imaging systems
Fatemi, Mostafa , Greenleaf, James F. , Alizad, Azra , Fatemi, Mostafa

The Journal of the Acoustical Society of America | March 12, 2005 | Volume: 117 | Issue: 3 | Pages: 1448-1455

10.1121/1.1852856 | PMID 15807032 Get It

Medical ultrasound scanners use high-energy pulses to probe the human body. The radiation force resulting from the impact of such pulses on an object can vibrate the object, producing a localized high-intensity sound in the audible range. Here, a theoretical model for the audio sound generated by ultrasound scanners is presented. This model describes the temporal and spectral characteristics of the sound. It has been shown that the sound has rich frequency components at the pulse repetition frequency and its harmonics. Experiments have been conducted in a water tank to measure the sound generated by a clinical ultrasound scanner in various operational modes. Results are in general agreement with the theory. It is shown that a typical ultrasound scanner with a typical spatial-peak pulse-average intensity value at 2 MHz may generate a localized sound-pressure level close to 100 dB relative to 20 μPa in the audible (<20 kHz) range under laboratory conditions. These findings suggest that fetuses may become exposed to a high-intensity audio sound during maternal ultrasound examinations. Therefore, contrary to common beliefs, ultrasound may not be considered a passive tool in fetal imaging.
Characterization of Wild-Type and ΔF508 Cystic Fibrosis Transmembrane Regulator in Human Respiratory Epithelia
Kreda, Silvia M. , Mall, Marcus , Mengos, April, Rochelle, Lori G., Yankaskas, James R., Riordan, John R., Boucher, Richard C. , Boucher, Richard C

Molecular Biology of the Cell | February 16, 2005 | Volume: 16 | Issue: 5 | Pages: 2154-2167

10.1091/mbc.e04-11-1010 | PMID 15716351 Get It

Previous studies in native tissues have produced conflicting data on the localization and metabolic fate of WT and ΔF508 cystic fibrosis transmembrane regulator (CFTR) in the lung. Combining immunocytochemical and biochemical studies utilizing new high-affinity CFTR mAbs with ion transport assays, we examined both 1) the cell type and region specific expression of CFTR in normal airways and 2) the metabolic fate of ΔF508 CFTR and associated ERM proteins in the cystic fibrosis lung. Studies of lungs from a large number of normal subjects revealed that WT CFTR protein localized to the apical membrane of ciliated cells within the superficial epithelium and gland ducts. In contrast, other cell types in the superficial, gland acinar, and alveolar epithelia expressed little WT CFTR protein. No ΔF508 CFTR mature protein or function could be detected in airway specimens freshly excised from a large number of ΔF508 homozygous subjects, despite an intact ERM complex. In sum, our data demonstrate that WT CFTR is predominantly expressed in ciliated cells, and ΔF508 CFTR pathogenesis in native tissues, like heterologous cells, reflects loss of normal protein processing.
Endocrine Control of Body Composition in Infancy, Childhood, and Puberty
Veldhuis, Johannes D. , Roemmich, James N. , Richmond, Erick , Rogol, Alan D. , Lovejoy, Jennifer C., Sheffield‐Moore, Melinda , Mauras, Nelly , Bowers, Cyril Y.

Endocrine Reviews | February 2, 2005 | Volume: 26 | Issue: 1 | Pages: 114-146

10.1210/er.2003-0038 | PMID 15689575 Get It

Hypercapnic Acidosis Impairs Plasma Membrane Wound Resealing in Ventilator-injured Lungs
Doerr, Clinton H., Gajić, Ognjen, Berríos, Jorge, Caples, Sean M., Abdel, Matthew, Lymp, James, Hubmayr, Rolf D.

American Journal of Respiratory and Critical Care Medicine | February 2, 2005 | Volume: 171 | Issue: 12 | Pages: 1371-1377

10.1164/rccm.200309-1223oc | PMID 15695495 Get It

Abstract The objective of this study was to assess the effects of hypercapnic acidosis on lung cell injury and repair by confocal microscopy in a model of ventilator-induced lung injury. Three groups of normocapnic, hypocapnic, and hypercapnic rat lungs were perfused ex vivo, either during or after injurious ventilation, with a solution containing the membrane-impermeant label propidium iodide. In lungs labeled during injurious ventilation, propidium iodide fluorescence identifies all cells with plasma membrane wounds, both permanent and transient, whereas in lungs labeled after injurious ventilation propidium iodide fluorescence identifies only cells with permanent plasma membrane wounds. Hypercapnia minimized the adverse effects of high-volume ventilation on vascular barrier function, whereas hypocapnia had the opposite effect. Despite CO2-dependent differences in lung mechanics and edema the number of injured subpleural cells per alveolus was similar in the three groups (0.48 ± 0.34 versus 0.51 ± 0.19 versus 0.43 ± 0.20 for hypocapnia, normocapnia, and hypercapnia, respectively). However, compared with normocapnia the probability of wound repair was significantly reduced in hypercapnic lungs (63 versus 38%; p < 0.02). This finding was subsequently confirmed in alveolar epithelial cell scratch models. The potential relevance of these observations for lung inflammation and remodeling after mechanical injury is discussed.
2004 Where Do We Go from Here?—Summary of Working Group Discussions on Thyroid Function and Gestational Outcomes
Hollowell, Joseph G., LaFranchi, Stephen, Smallridge, Robert C., Spong, Catherine Y., Haddow, James E. , Boyle, Coleen A.

Thyroid | February 1, 2005 | Volume: 15 | Issue: 1 | Pages: 72-76

10.1089/thy.2005.15.72 | PMID 15687826 Get It

Interindividual Variation in Posture Allocation: Possible Role in Human Obesity
Levine, James A. , Lanningham‐Foster, Lorraine, McCrady, Shelly K., Krizan, Alisa C., Olson, Leslie R., Kane, Paul H., Jensen, Michael D. , Clark, Matthew M. , Olson, Leslie

Science | January 27, 2005 | Volume: 307 | Issue: 5709 | Pages: 584-586

10.1126/science.1106561 | PMID 15681386 Get It

Obesity occurs when energy intake exceeds energy expenditure. Humans expend energy through purposeful exercise and through changes in posture and movement that are associated with the routines of daily life [called nonexercise activity thermogenesis (NEAT)]. To examine NEAT's role in obesity, we recruited 10 lean and 10 mildly obese sedentary volunteers and measured their body postures and movements every half-second for 10 days. Obese individuals were seated, on average, 2 hours longer per day than lean individuals. Posture allocation did not change when the obese individuals lost weight or when lean individuals gained weight, suggesting that it is biologically determined. If obese individuals adopted the NEAT-enhanced behaviors of their lean counterparts, they might expend an additional 350 calories (kcal) per day.