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367 citation(s) found for "Xu, Site".

Using Electronic Health Records to Classify Cancer Site and Metastasis
Ruddy, Kathryn J. , Pachman, Deirdre R. , Grzegorczyk, Veronica , Rahman, Parvez, Tobin, Kyle A., Chlan, Linda L., Marsolo, Keith , Lam, Veronica , Rahman, Parvez A, Kroenke, Kurt , Herrin, Jeph , Tobin, Kyle A., Griffin, Joan M. , Austin, Jessica D. , Ridgeway, Jennifer L. , Mitchell, Sandra A , Cheville, Andrea

Applied Clinical Informatics | June 19, 2025 | Volume: 16 | Issue: 03 | Pages: 556-568

10.1055/a-2544-3117 | PMID 40533095 Get It

AbstractThe Enhanced EHR-facilitated Cancer Symptom Control (E2C2) Trial is a pragmatic trial testing a collaborative care approach for managing common cancer symptoms. There were challenges in identifying cancer site and metastatic status.This study compares three different approaches to determine cancer site and six strategies for identifying the presence of metastasis using EHR and cancer registry data.The E2C2 cohort included 50,559 patients seen in the medical oncology clinics of a large health system. SPPADE symptoms were assessed with 0 to 10 numeric rating scales (NRS). A multistep process was used to develop three approaches for representing cancer site: the single most prevalent International Statistical Classification of Diseases and Related Health Problems, 10th Revision (ICD-10) code, the two most prevalent codes, and any diagnostic code. Six approaches for identifying metastatic disease were compared: ICD-10 codes, natural language processing (NLP), cancer registry, medications typically prescribed for incurable disease, treatment plan, and evaluation for phase 1 trials.The approach counting the two most prevalent ICD-10 cancer site diagnoses per patient detected a median of 92% of the cases identified by counting all cancer site diagnoses, whereas the approach counting only the single most prevalent cancer site diagnosis identified a median of 65%. However, agreement among the three approaches was very good (kappa > 0.80) for most cancer sites. ICD and NLP methods could be applied to the entire cohort and had the highest agreement (kappa = 0.53) for identifying metastasis. Cancer registry data was available for less than half of the patients.Identification of cancer site and metastatic disease using EHR data was feasible in this large and diverse cohort of patients with common cancer symptoms. The methods were pragmatic and may be acceptable for covariates, but likely require refinement for key dependent and independent variables.
Use of calcium phosphate bone cement in retrosigmoid craniotomies to reduce rates of pseudomeningocele and craniotomy-site CSF leakage: a cohort study and meta-analysis
Webb, Kevin L. , Michaelcheck, Charlotte E., Link, Michael J. , Celda, María Peris, Carlstrom, Lucas P. , Peris Celda, Maria, Bauman, Megan M. J. , Morshed, Ramin A. , Gompel, Jamie J. Van

Journal of Neurosurgery | June 6, 2025 | Volume: 143 | Issue: 4 | Pages: 1027-1036

10.3171/2025.1.jns241076 | PMID 40479821 Get It

OBJECTIVE Calcium phosphate cement (CPC) use has been previously described as a strategy to reduce the rates of pseudomeningocele and CSF leakage following skull base surgery. The authors aimed to present their institutional experience with CPC in retrosigmoid craniotomy and perform a systematic review of the literature to determine the effectiveness of CPC in reducing postoperative complications, including pseudomeningocele and craniotomy-site CSF leakage. METHODS A retrospective single-institution cohort study of patients who underwent retrosigmoid craniotomy with and without CPC cranioplasty from January 2017 to April 2024 was performed. A systematic literature review and meta-analysis of CPC use in retrosigmoid craniotomy was also performed. RESULTS Of 336 patients who underwent retrosigmoid craniotomy, 193 (57%) were female and the median age at surgery was 55 years (range 18–81 years). The median follow-up duration was 23 months (range 3–80 months). CPC was used to seal the edge of the craniotomy in 66 patients (20%). Among all patients, 50 (15%) experienced a postoperative complication, and 28 (8%) were wound-specific complications. Patients in the non-CPC group experienced significantly more postoperative wound-specific complications than those in the CPC group (10% vs 0%, p = 0.002). Specifically, pseudomeningocele occurred in 0 patients (0%) in the CPC group compared with 24 patients (9%) in the non-CPC group (p = 0.006), which progressed to CSF leaks at the craniotomy site in 6 patients (p = 0.60). Additionally, no patients (0%) in the CPC group experienced wound infection, dehiscence, or breakdown compared with 10 patients (4%) in the non-CPC group (p = 0.22). Five patients (8%) in the CPC group reported prolonged mild incisional pain at the craniotomy site, and there were no instances of major complications related to the CPC. In the meta-analysis, 10 studies met the inclusion criteria, yielding a total of 2166 patients (including the current study), 1101 of whom received CPC. In the pooled analysis, CPC was significantly associated with lower risk of CSF leakage at the craniotomy site (OR 0.23, 95% CI 0.13–0.42; p < 0.01) and lower risk of infection (OR 0.17, 95% CI 0.08–0.38; p < 0.01). CONCLUSIONS CPC use in retrosigmoid craniotomies could be a safe and effective strategy to reduce the incidence of pseudomeningocele and craniotomy-site CSF leakage, leading to lower rates of wound-related complications and infection.
TDP-43 dysregulation of polyadenylation site selection is a defining feature of RNA misprocessing in amyotrophic lateral sclerosis and frontotemporal dementia
Arnold, Frederick J. , Cui, Ya , Colwin, Michael R., Stockford, Cameron , Jawahar, Vidhya Maheswari, Jansen‐West, Karen , Gulia, Ravinder , Gou, Yunzi , Tam, Oliver H. , Situ, W., Cazarez, Saira L, Zandi, Ali Shahidi , Ehsani, Kean C. K., Howard, Sierra, Prudencio, Mercedes , Petrucelli, Leonard , Spada, Albert R. La , Maheswari Jawahar, Vidhya, Jansen-West, Karen, Prudencio, Mercedes , Michels, Sebastian , Ye, Wenbin , Bharathi, Vidhya , Philippe, Julien, Menon, Sneha, Cazarez, Saira L., Zandi, Aryan, Dickson, Dennis W. , Hammell, Molly , Li, Wei

Journal of Clinical Investigation | June 1, 2025 | Volume: 135 | Issue: 11 | Pages: No page available

10.1172/jci182088 | PMID 40454469 Get It

Nuclear clearance and cytoplasmic aggregation of TAR DNA-binding protein 43 (TDP-43) are observed in many neurodegenerative disorders, including amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). Although TDP-43 dysregulation of splicing has emerged as a key event in these diseases, TDP-43 can also regulate polyadenylation; yet this has not been adequately studied. Here, we applied the dynamic analysis of polyadenylation from an RNA-Seq (DaPars) tool to ALS/FTD transcriptome datasets and report extensive alternative polyadenylation (APA) upon TDP-43 alteration in ALS/FTD cell models and postmortem ALS/FTD neuronal nuclei. Importantly, many identified APA genes highlight pathways implicated in ALS/FTD pathogenesis. To determine the functional relevance of APA elicited by TDP-43 nuclear depletion, we examined microtubule affinity regulating kinase 3 (MARK3). Nuclear loss of TDP-43 yielded increased expression of MARK3 transcripts with longer 3′ UTRs, corresponding with a change in the subcellular distribution of MARK3 and increased neuronal tau S262 phosphorylation. Our findings define changes in polyadenylation site selection as a previously understudied feature of TDP-43–driven disease pathology in ALS/FTD and highlight a potentially important mechanistic link between TDP-43 dysfunction and tau regulation.
Impact of Preoperative Povidone Nasal Swab on the Incidence of Surgical Site Infection: An Observational Study
Edwards, Michael A. , Caballero, Anyull D. Bohorquez, Glasgow, Amy E. , Whaley, Renee, Bosch, Wendelyn , Dahab, T , Spaulding, Aaron , Bohorquez Caballero, Anyull D, Glasgow, Amy, Dahab, Talal M, Spaulding, Aaron , Whaley, Renee, Colibaseanu, Dorin

Journal of Patient Safety | May 20, 2025 | Volume: 21 | Issue: 5 | Pages: 348-355

10.1097/pts.0000000000001348 | PMID 40391879 Get It

Objectives: Surgical site infections (SSIs) are the most common hospital-acquired infections in the United States, of which methicillin-resistant Staphylococcus aureus (MRSA) accounts for 43%. Preoperative povidone-iodine nasal swab (PNS) is considered an effective and cost-saving treatment for Staphylococcus aureus decolonization. We aim to assess the impact of preoperative PNS on SSI incidence. Materials and Methods: This retrospective observational study utilized elective surgical cases between January 1, 2018 and May 31, 2023, at a single academic medical center. The cohort was divided into PNS and no PNS groups. The cohort was propensity-matched, and Pearson χ2/Kruskal-Wallis tests were performed to compare group differences. Multivariable logistic regression was utilized to compare events between cohorts before and after matching. An alpha of <0.05 was considered significant. Results: A total of 45,998 (22,999 per group) matched participants were evaluated. On multivariate regression, the non-PNS treatment group was associated with an increase in hospital overall SSI occurrence (OR: 1.48, P = 0.02) but not specifically in-hospital methicillin-sensitive Staphylococcus aureus SSI, MRSA-SSI, or any 30-day SSI (P > 0.05). Compared with PNS treatment and prophylactic antibiotics, in-hospital SSI was higher in the absence of PNS treatment (OR: 1.83, P < 0.001), antibiotic (OR: 2.63, P < 0.001), or both (OR: 2.06, P < 0.01). Compared with PNS treatment plus prophylactic antibiotic, in-hospital MRSA-SSI was only higher in the absence of antibiotic (OR: 2.92, P < 0.01) treatment. Conclusions: Preoperative treatment with PNS may reduce overall in-hospital SSI but has no independent impact on MRSA SSI.
Centoring and Anchoring Approach to Endoscopically Manage Nonhealing Percutaneous Endoscopic Gastrostomy Site Fistula
Ohri, Ashwariya , Chopra, Preeyati , Gala, Khusbhoo, Buttar, Navtej , Ohri, Ashwariya , Chopra, Preeyati , Goyal, Mayank, Gala, Khusbhoo

American Journal of Gastroenterology | April 8, 2025 | Volume: 120 | Issue: 12 | Pages: 2756-2756

10.14309/ajg.0000000000003481 | PMID 40197513 Get It

Acute Symptomatic Seizures During CAR T-Cell Therapy for Hematologic Malignancies: Tri-Site Mayo Clinic Experience (S20.003)
Freund, Brin , Shar, Andy , Betiku, O. A., Drees, Cornelia , Barrios, M. A. , Tatum, William O. , Feyissa, Anteneh M. , Drees, Cornelia , Sherman, Wendy , Qin, Hong , Britton, Jeffrey W. , Barrios, Maria, ReFaey, Karim

Neurology | April 7, 2025 | Volume: 104 | Issue: 7_Supplement_1 | Pages: No page available

10.1212/wnl.0000000000211534 Get It

Primary Ovarian Non‐Gestational Placental Site Trophoblastic Tumor in a Pediatric Patient: A Case Report and Review of the Literature
McChesney, Marissa K., Hull, Nathan C. , Bendel, Emily C. , Ishitani, Michael B., Shahi, Maryam , Demirel, Nadir , Allen‐Rhoades, Wendy , Allen-Rhoades, Wendy A

Pediatric Blood & Cancer | March 22, 2025 | Volume: 72 | Issue: 6 | Pages: No page available

10.1002/pbc.31671 | PMID 40119593 Get It

A Systematic Review of Functional Donor‐Site Morbidity in Scapular Bone Transfer
Richter, John E. , Arias‐Valderrama, Oriana , Pirgousis, Phillip , Candelo, Estephanía , Richter, John E , Patel, Samip

Microsurgery | March 18, 2025 | Volume: 45 | Issue: 3 | Pages: No page available

10.1002/micr.70044 | PMID 40099693 Get It

ABSTRACTBackgroundDespite the general perception of minimal donor‐site morbidity associated with scapular free flaps, the surgical harvest of scapular bone and subsequent reattachment of parascapular muscle have the potential to compromise postoperative shoulder function. A comprehensive assessment of functional impairment remains undocumented in the literature. Therefore, this systematic review was conducted to thoroughly explore both subjective and objective donor‐site morbidity following free flap surgery.MethodsSearches were conducted on PubMed, Embase, and CENTRAL to locate articles addressing functional donor‐site morbidity after the transfer of scapular bone. Qualifying articles reported scapular free flaps which utilized bone, including lateral border, medial border, and scapular tip. Each measured donor‐site morbidity using at least one of these measures: Constant‐Murley score (CM), Disabilities of Arm, Shoulder, and Hand questionnaire (DASH), shoulder range of motion (ROM), and shoulder strength.ResultsThe search culminated in 16 eligible studies, incorporating data from 316 cases. The CM was employed in five studies, yielding mean values from 60.6 to 95, while the DASH was utilized in nine studies, with means ranging from 10.44 to 46.7. Compared to normative values, these CM and DASH scores reflected negligible to mild impairment in shoulder function. Additional evaluations of shoulder ROM, conducted in four studies, revealed modest yet statistically significant reductions in flexion, abduction, and external rotation. Three studies measuring shoulder strength reported associated mild weakening of these motions.ConclusionsThis systematic review enables healthcare providers to characterize the probable scope of shoulder dysfunction following scapular bone harvest. Patient‐reported outcomes imply a high tolerance for the procedure, while objective measures denote the potential for substantial restoration of shoulder function approaching preoperative levels. To augment the understanding of functional recovery, future research should incorporate a comparative analysis of preoperative and postoperative functional metrics for each subject.
Homelessness and Cancer: A Multi-Site, Mixed Methods Study of Delayed or No Cancer Therapy
Haemmerle, Robert , Fee-Schroeder, Kelliann C., Phelan, Lynn, Jatoi, Aminah , Cathcart-Rake, Elizabeth , Haemmerle, Robert J , Fee-Schroeder, Kelliann, Cathcart-Rake, Elizabeth J , Phelan, Lynn

American Journal of Hospice and Palliative Medicine® | March 18, 2025 | Volume: 43 | Issue: 2 | Pages: 179-187

10.1177/10499091251325231 | PMID 40099521 Get It

Background: Patients who experience homelessness manifest poor cancer outcomes, often because of treatment delays. Few studies have used mixed methods to learn what happens at the patient and health care staff level to explain these delays. Methods: This single-institution, multi-site study interrogated the entire medical record system (thousands of patients annually) for homelessness and cancer diagnoses from January 1, 2019, through October 10, 2023. Records were abstracted for relevant quantitative and qualitative data; rigorous methods were used to analyze, integrate, and report findings. Results: Forty-three patients with a median age of 58 years (range: 32, 73 years) and 34 (79%) assigned male sex at birth are the focus of this report. The most common cancers include hematologic (n = 8), gastrointestinal (n = 8), and genitourinary (n = 8). Thirty-five patients (81%) initiated cancer therapy, and 27 (63%) manifested treatment delay (>4 weeks post-diagnosis). The median time to cancer therapy was 9 weeks (95% confidence interval: 4.6, 12 weeks). Qualitative themes that explain delays are as follows: (1) logistical challenges in communication between the patient and health care team (“lack of a cell phone”); (2) patient reluctance to receive care (“patient elected to leave Against Medical Advice”); and (3) medical challenges in providing care (“he was hospitalized after being found down and hypotensive”). Conclusions: This study confirms that initiation of cancer therapy is often delayed in patients who experience homelessness. It sheds light on reasons for delay – for example, lack of phone access, an observation which suggests that perhaps provision of a burner phone might help some patients.