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832 citation(s) found for "Ha, Chris".

Trans-ancestry genome-wide association meta-analysis of antidepressant response to selective serotonin reuptake inhibitors in clinical studies of depression
Hu, Ke , Lo, Chris Wai Hang , Awasthi, Swapnil , Pain, Oliver , Singh, Madhurbain , Ahn, Yeeun , Baune, Bernhard T, Biernacka, Joanna M, Choi, Hong , Czamara, D , Domschke, Katharina, Fabbri, Chiara, Ising, Marcus, Jang, Yoonjeong , Kim, Doh Kwan , Kim, Dongjun, Lee, Byung-Chul, Lewis, Glyn, Lim, S-A , Liu, Yu-Li, Myung, Woojae, Perroud, Nader, Serretti, Alessandro, Uher, Rudolf, Weinshilboum, Richard M. , Won, Hong-Hee, Lewis, Cathryn M. , Hu, Ke , Ripke, Stephan , Coleman, Jonathan Ri , Lewis, Cathryn M , Aitchison, Katherine Jean , Baune, Bernhard , Biernacka, Joanna M. , Bondolfi, Guido , Carrillo‐Roa, Tania , Domschke, Katharina , Hamilton, Steven P. , Ising, Marcus , Kato, Masaki , Lewis, Glyn , Liu, Yu‐Li , Myung, Woojae , Tsai, Shih‐Jen , Uher, Rudolf , Weinshilboum, Richard M. , Won, Hong‐Hee

No container title available | June 5, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.64898/2026.06.03.26354703 | PMID 42282178 Get It

Abstract Antidepressants are widely prescribed for major depressive disorder, yet only one-third of patients achieve remission after initial treatment. Previous genome-wide association studies (GWAS) of clinically assessed antidepressant response combined multiple antidepressant classes, potentially obscuring class-specific effects. This study focused on selective serotonin reuptake inhibitors (SSRIs), often first-line due to better tolerability. Data from 15 cohorts across four ancestries were integrated: European (N = 3887; 11 studies), East Asian (N = 1068; 4), African (N = 277; 1), and Admixed American (N = 250; 1). GWAS of non-remission and percentage improvement were conducted within cohorts, followed by ancestry-specific meta-analyses and trans-ancestry meta-regression. Single nucleotide polymorphism (SNP)-based heritability was estimated in European samples. Polygenic scores were used for leave-one-out prediction and to assess shared genetic architecture with psychiatric traits. Gene-level and gene-set enrichment analyses were also performed. No genome-wide significant variants were identified for either outcome in any ancestry-specific or trans-ancestry analyses. However, trans-ancestry meta-regression yielded eight independent loci with suggestive associations (p < 1 × 10 −5 ) for non-remission and 17 for percentage improvement. Gene-set analyses revealed nominal enrichment of the serotonergic synapse pathway for non-remission. SNP-based heritability estimates were not significantly different from zero for either outcome. Better SSRI response was nominally associated with lower genetic predisposition to major depressive disorder, post-traumatic stress disorder, and schizophrenia. This study represents the largest trans-ancestry GWAS of SSRI response, highlighting emerging biological signals. Limited power emphasises the need for larger and ancestrally diverse cohorts to better characterise the genetic architecture of antidepressant response.
Predicting Treatment Response After Total Neoadjuvant Therapy for Locally Advanced Rectal Cancer
Varghese, Chris , Ng, Jyi Cheng , Sassun, Richard, Thiels, Cornelius, Salehinejad, Hojjat , Perry, William R. G., Mathis, Kellie L., Larson, D. W., Larson, David W. , Perry, William , Varghese, Chris , Larson, David W , Cheng, Jyi Ng , Perry, William R , Sassun, Richard , Thiels, Cornelius A. , Mathis, Kellie L.

Annals of Surgery | June 4, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.1097/sla.0000000000007058 | PMID 42240534 Get It

Objective: To develop a predictive model for pathological complete response (pCR) after total neoadjuvant therapy (TNT) to inform selection for watch-and-wait (W/W). Summary Background Data: Patient selection for W/W after TNT for locally advanced rectal cancer remains challenging. Methods: An ensemble of tabular foundation models was fine-tuned in adults with clinical stage II or III microsatellite stable primary rectal adenocarcinoma undergoing TNT and total mesorectal excision (TNT+TME) from 2018-2023 to predict pCR, using pre-TNT, post-TNT and pre-TME variables. This model was externally validated on patients having TNT and W/W (TNT+W/W) to predict persistent clinical complete response (pcCR; the absence of local regrowth, distant metastases, or persistent near-cCR). Area under the receiver operator curve (AUROC), area under the precision-recall curve (AUPRC), and Brier score were calculated with 95% confidence intervals (CI). Results: Among 308 patients that underwent TNT+TME (median age 56; 40% female), the model predicted pCR with an AUROC 0.71 (95% CI 0.65-0.77), AUPRC 0.44 (95% CI 0.35-0.57), and was well calibrated with a Brier score of 0.17 (95% CI 0.15-0.20). At external validation in a cohort of 83 patients that are being managed with TNT+W/W (median age 57; 37% female), the model predicted pcCR with an AUROC 0.69 (95% CI 0.57-0.82), AUPRC 0.90 (95% CI 0.82-0.96), and Brier score of 0.30 (95% CI 0.26-0.33), improving to 0.17 with recalibration. Conclusions: This novel predictive model demonstrated good discrimination and calibration for pCR after TNT+TME with utility in TNT+W/W for pcCR after appropriate recalibration, supporting its application for W/W patient selection.
Comparative evaluation of the Mayo Clinic Florida microdosimetric kinetic model and mMKM for carbon ion treatment planning: A matRad‐based analysis
Liang, Xiaoying, Park, Chunjoo, Lu, Bo, Tan, Jun , Seckler, Lisa, Cristoforetti, Remo , Inaniwa, Taku, Beltran, Chris J., Hartzell, Shannon , Yaddanapudi, Sridhar , Furutani, Keith M. , Parisi, Alessio , Liang, Xiaoying, Lu, Bo , Inaniwa, Taku , Wahl, Niklas , Beltran, Chris

Journal of Applied Clinical Medical Physics | June 1, 2026 | Volume: 27 | Issue: 5 | Pages: No page available

10.1002/acm2.70645 | PMID 42219622 Get It

Abstract Purpose Modeling relative biological effectiveness (RBE) is central to carbon ion radiotherapy treatment planning. The modified Microdosimetric Kinetic Model (mMKM) is a clinically established RBE framework that has guided treatment protocols at many existing carbon centers, while the Mayo Clinic Florida Microdosimetric Kinetic Model (MCF MKM) is a recently developed alternative. This work aims to implement the MCF MKM in the open‐source treatment planning system matRad and to quantitatively compare its RBE‐weighted dose predictions with those of the clinically established mMKM using identical physical dose distributions across multiple disease sites. These findings will help assess their dosimetric equivalence and inform protocol development for carbon ion radiotherapy at MCF. Methods Monte Carlo simulations of the MCF carbon beamline were performed to generate physical (IDD, LET, lateral spread) and biological base data for integration of each RBE model into matRad . Treatment plans were generated for six patients, each corresponding to a different disease site, using clinical beam configurations with carbon‐reference dose prescriptions, and plans were optimized using the MCF MKM. To isolate differences attributable solely to the RBE model, the resulting physical dose distributions were held fixed and RBE‐weighted doses were recalculated using the mMKM. Dose volume histogram (DVH) metrics and spatial dose‐difference maps were used to compare target coverage and organ‐at‐risk doses between the two models. Results Across patient cases, RBE‐weighted dose distributions from MCF MKM and mMKM showed strong agreement. Differences in target coverage were small, with CTV D95% differing by less than 1.6% across all disease sites and maximum target dose differences not exceeding 0.88%. Organ‐at‐risk dose deviations were limited, with differences of 3.0% or less across evaluated DVH metrics. Spatial dose‐difference maps showed that the largest discrepancies occurred in regions of steep dose gradients near target to organ‐at‐risk interfaces, while overall dose conformity and plan quality remained comparable between the two models. Conclusions: This study served as the first systematic model comparison of the MCF MKM and mMKM within a treatment planning environment. These findings suggest that the MCF MKM and mMKM produce dosimetrically consistent RBE‐weighted dose predictions under realistic planning conditions using carbon‐reference parameters. Accordingly, the fractionation schemes developed from years of clinical experience with mMKM implementations may serve as a practical foundation for protocol development at MCF.
Adenoma detection following screening colonoscopy and stool-based colorectal cancer screening tests with follow-up colonoscopy: A systematic and network meta-analysis.
Estes, Chris, Vahdat, Vahab, Johnson, Heather, Thompson, Gina, Brown, J D , Ebner, Derek W., Alagoz, Oguzhan, Anderson, Joseph C., Butterly, Lynn F. , Estes, Chris , Vahdat, Vahab , Johnson, Heather , Thompson, Gina , Kisiel, John B. , Ebner, Derek W. , Alagöz, Oğuzhan , Anderson, Joseph C. , Limburg, Paul J.

Journal of Clinical Oncology | May 28, 2026 | Volume: 44 | Issue: 16_suppl | Pages: No page available

10.1200/jco.2026.44.16_suppl.e15647 Get It

e15647 Background: Colorectal cancer (CRC) screening offers an opportunity to prevent invasive disease by detecting and removing precancerous lesions. Colonoscopy-based detection of adenomas and serrated polyps is strongly associated with reduced risk of interval CRC. While the performance of noninvasive CRC screening tests is well described, comparative evidence on adenoma detection across screening colonoscopy and stool-based strategies with follow-up colonoscopy remains limited. We conducted a systematic review to compare adenoma detection across CRC screening modalities. Methods: MEDLINE (PubMed) and Embase were searched from January 1, 2000, through July 10, 2025, for peer-reviewed, U.S.-based studies reporting colonoscopy among average-risk adults aged ≥45 years, who underwent screening colonoscopy or follow-up colonoscopy after a positive stool-based screening test [fecal immunochemical test (FIT) or multi-target stool DNA (mt-sDNA) test]. The primary outcome was the detection of one or more adenomas at colonoscopy. High-risk or surveillance cohorts, AI-assisted colonoscopy, diagnostic accuracy trials, and non-U.S. studies were excluded. Results: Among 7,710 de-duplicated records, 147 studies underwent full-text review, and 47 studies were included in quantitative synthesis, with reported adenoma detection for screening colonoscopy alone (n = 31), follow-up colonoscopy after a positive FIT alone (n = 4), follow-up colonoscopy after a positive mt-sDNA test alone (n = 4), and for more than one of the screening strategies of interest (n = 8). Across included studies, overall adenoma detection differed by screening pathway. Follow-up colonoscopy after a positive mt-sDNA test demonstrated the highest adenoma detection (66.3%; 95% CI, 61.2-71.1), with lower adenoma detection observed for colonoscopy after a positive FIT (50.6%; 95% CI, 43.4-57.8) and screening colonoscopy alone (33.8%; 95% CI, 30.9-36.8) (Table 1). Conclusions: Detection of adenomas was highest following colonoscopy performed after a positive mt-sDNA test compared with FIT-positive follow-up or screening colonoscopy alone. These findings highlight differences in downstream detection across CRC screening tests and suggest that, in settings where colonoscopy resources are constrained, initial mt-sDNA screening with timely follow-up colonoscopy may help prioritize patients most likely to benefit. CRC screening modality No. of Studies Adenoma detected Study population Proportion, % (95% CI) Heterogeneity, I² (%) Between-study variance (τ 2 ) P-value* mt-sDNA 8 17,436 29,098 66.3 (61.2-71.1) 94.6 0.0924 <0.0001 FIT 11 17,588 32,630 50.6 (43.4-57.8) 94.0 0.2187 <0.0001 Screening colonoscopy 38 2,351,801 6,378,891 33.8 (30.9-36.8) 99.8 0.1710 NA *P-value represents adenoma detection vs. screening colonoscopy adenoma detection.
Challenges in establishing epidemiological cut-off values for the Burkholderia cepacia complex
Huse, Holly, Manuel, Carmila , McLemore, Tracey, Humphries, Romney M. , Galdino, Anna Clara Milesi , Celedonio, Diana, LiPuma, John J. , Green, Daniel A. , Traczewski, Maria Maduri, Turnidge, John , Carpenter, Darcie, Huband, Micahel D , Pillar, Chris M., Humphries, Romney , LiPuma, John J. , Zlosnik, James E. A. , Traczewski, Maria M., Schuetz, Audrey N. , Wootton, Mandy , Monogue, Marguerite L. , Jorth, Peter

No container title available | May 21, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.64898/2026.05.18.725987 Get It

ABSTRACT The Burkholderia cepacia complex (BCC) is comprised of 24 species of Gram-negative bacteria that cause opportunistic infections. While antimicrobial susceptibility testing (AST) has historically been used to guide treatment for BCC infections, recent work highlighting problems with AST for these organisms led the Clinical and Laboratory Sciences Institute (CLSI) to remove disk diffusion (DD) and minimal inhibitory concentration (MIC) breakpoints for BCC from its M100 standards document. Epidemiological cut-off values (ECVs) may be helpful to clinicians in the absence of breakpoints, as they may be used to determine whether an isolate has a wild-type or non-wild-type phenotype. Here we present an analysis of BCC ECVs for ceftazidime (CAZ), levofloxacin (LVX), meropenem (MEM), minocycline (MIN), and trimethoprim-sulfamethoxazole (TMP-SMX). ECVs were calculated using MIC data from 3 previous studies and 3 independent laboratories for 1,896 BCC isolates. ECVs were 16 μg/ml for CAZ, 8 μg/ml for LVX, 16 μg/ml for MEM, and 8 μg/ml for MIN. The ECV for TMP-SMX varied depending on the analysis from 2 μg/ml, 8 μg/ml, and 16 μg/ml and therefore could not be reliably established. Challenges with establishing ECVs for BCC include limitations with the pooled MIC dataset, broad MIC distributions, and high ECVs that are above the obsolete susceptible MIC breakpoints. These challenges limit the clinical utility of ECVs for these organisms and supported removal of ECVs from the CLSI M100 standards document. IMPORTANCE The Burkholderia cepacia complex is a group of bacterial species that cause difficult-to-treat opportunistic infections. Recently, clinical breakpoints, which are used to determine whether organisms are susceptible to certain antimicrobials, were removed from Clinical and Laboratory Standards Institute (CLSI) standards for these organisms due to problems with antimicrobial susceptibility testing performance. Clinicians are now faced with the challenge of how to treat these complex infections without clinical breakpoints. Here we determine epidemiological cut-off values (ECVs) for relevant antimicrobials for the B. cepacia complex. While we established ECVs for four antimicrobials, we encountered significant challenges in our analyses, including limitations with data for these organisms and high ECVs that are not clinically useful. These challenges limit the practical use of these ECVs in helping guide clinicians on treatment and supported the eventual removal of ECVs from the CLSI M100 standards document.
Fluoroscopy-Guided Motion Management in Particle Therapy: Evolution, Challenges, and AI-Enabled Opportunities
Li, Feifei, Furutani, Keith M. , Beltran, Chris J., Furutani, Keith M , Beltran, Chris

Tomography | May 21, 2026 | Volume: 12 | Issue: 5 | Pages: 66

10.3390/tomography12050066 | PMID 42188707 Get It

The sharp dose gradients that underpin the dosimetric advantage of particle therapy over photon therapy can be undermined by the interplay effects due to intra-fraction motion in modern pencil beam scanning systems. Fluoroscopy-Guided Particle Therapy (FGPT) offers a promising path to improved motion management through real-time tracking of tumors or surrogate signals. The advent of flat-panel detector (FPD)-based technology has enabled tighter integration of fluoroscopy/fluorography into treatment units and accelerated clinical adoption and research, with commercial systems such as Hitachi’s Real-time Gated Particle Therapy (RGPT) now available. However, the need for implanted fiducial markers, with the associated invasiveness and risk of complications, limits the utility of RGPT to a few anatomic sites in selected patients. The full potential of FGPT, therefore, depends on reliable marker-less tumor tracking, which remains challenging because soft-tissue targets are obscured by overlapping anatomy along the X-ray path, leading to reduced reliability of traditional image-registration algorithms in the projection domain. Recent advances in deep learning and AI-driven image registration have renewed hope for overcoming these barriers, enabling real-time marker-less tracking for particle therapy. This review outlines the evolution of fluoroscopy technology from image intensifier (II) to FPD-based systems, summarizes historical and recent vendor-supported FGPT strategies, and surveys emerging AI-based algorithms in the literature. A general review of machine learning-based image registration is provided, challenges in generalizability and interpretability are highlighted, and potential paths toward reliable, clinically deployable FGPT are discussed.
A prospective risk analysis for the clinical commissioning of a dose-driven continuous scanning proton therapy system
Herchko, Steven, Liang, Xiaoying, Beltran, Chris, Liang, Xiaoying, Shen, Jiajian , Furutani, Keith M.

Frontiers in Oncology | May 20, 2026 | Volume: 16 | Issue: No issue available | Pages: No page available

10.3389/fonc.2026.1826522 | PMID 42245713 Get It

Introduction Proton dose driven continuous scanning (DDCS) is a form of proton pencil beam scanning (PBS) in which the beam may remain on during transitions between successive spots. Mayo Clinic Florida (MCF) is preparing to commission a synchrotron-based proton therapy system designed for DDCS, incorporating novel irradiation control features. Given the novelty and complexity of this system, a systematic risk-based analysis was performed to inform upcoming commissioning strategies. Methods A prospective risk analysis was conducted using the American Association of Physicists in Medicine (AAPM) Task Group 100 (TG 100) framework. A comprehensive process map of the DDCS irradiation control workflow was developed. Failure modes and effects analysis (FMEA) was performed to identify potential delivery system failure modes and to score each failure mode based on occurrence, severity, and lack of detectability. Targeted mitigation and commissioning strategies were then developed to address the highest-risk items. Results Twenty-nine delivery system failure modes were identified. The highest-risk failure modes were specific to DDCS operation. Targeted commissioning strategies were defined, including scan path measurement and modeling, validation of move and flap dose, dose monitor collection efficiency testing, spot position monitor performance evaluation, and verification of control system intervention behavior. Incorporation of these strategies into the commissioning plan reduced the mean RPN by more than 50%. Discussion This work provides a detailed description of the MCF proton DDCS irradiation control system and uses a TG 100 based approach for identifying system-specific risks. As new systems incorporate technologies for which limited guidance exists, institutions must perform their own risk analyses to determine appropriate quality management strategies.
Sequential Extracorporeal Shockwave Therapy and Platelet-Rich Plasma for Treatment of Sacral Stress Fracture in a Triathlete
LeFiles, Kathleen, Davies, Callie, Pohlad, Julie, Ha, Chris, Ha, Chris Thuc , Ha, Chris , Davies, Callie M. , Pohlad, Julie L

American Journal of Physical Medicine & Rehabilitation | May 19, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.1097/phm.0000000000003047 | PMID 42155466 Get It

Sacral stress fractures are rare in athletes, present as nonspecific gluteal and/or back pain, and are often missed on radiographs. Standard treatment includes activity modification, physical therapy, and pain medications. However, prolonged recovery and recurrence remain concerns in athletes. There is evidence for the use of extracorporeal shockwave therapy (ESWT) in the treatment of stress fractures, and platelet-rich plasma (PRP) has also shown promise in accelerating bony healing. This case report describes a 48-year-old male triathlete with a recurrent sacral stress fracture unresponsive to conservative management. Following MRI diagnosis, he underwent sequential ESWT and PRP injection, resulting in successful return to competitive training levels at 8-weeks post-treatment. Although an MRI at 3-months post-treatment showed persistent bony edema, his PROMIS-Pain Interference (PI) and Global Pain Scale (GPS) scores improved from 54 to 40 and 62/100 to 4/100, respectively. There is currently no published literature on the sequential use of ESWT and PRP for the treatment of sacral stress fractures. To our knowledge, this is the first documented case of this novel treatment, suggesting a potential role for combination therapy in such injuries. Further research is warranted to validate the efficacy and long-term outcomes of this emerging therapeutic approach in athletic populations.
Rebuilding the clinical academic pipeline: an early career vision for reform
Drozd, Michael, Sebopelo, Lorraine, Nimmons, Danielle , Safdar, Nawaz, Varghese, Chris, Drozd, Michael , Sebopelo, Lorraine Arabang , Safdar, Nawaz Z. , Varghese, Chris

BMJ | May 19, 2026 | Volume: 393 | Issue: No issue available | Pages: e088639

10.1136/bmj-2025-088639 | PMID 42156112 Get It

C35-03 Barriers and Facilitators to Chronic Obstructive Pulmonary Disease Care in Rural Areas: Perspectives From Rural Veterans
Hamann, K, Anton, A, Wendt, C H, Baldomero, A K, Hamann, Kayla M., Wendt, Chris H. , Baldomero, Arianne K.

American Journal of Respiratory and Critical Care Medicine | May 18, 2026 | Volume: 212 | Issue: Supplement_1 | Pages: No page available

10.1093/ajrccm/aamag162.1952 Get It

Abstract Rationale Chronic obstructive pulmonary disease (COPD) is a leading cause of morbidity and mortality in the United States. Rural populations experience a disproportionate burden, which likely reflects a combination of factors, including limited access to evidence-based COPD care. Our aim was to identify barriers, facilitators, and recommendations to improve the quality of COPD care received by rural veterans. Methods We performed a qualitative study of veterans with COPD who lived in rural areas. Participants were drawn from the Minneapolis VA Health Care System and the St. Cloud VA Health Care System. We conducted semi-structured interviews to explore rural veterans’ personal experiences navigating the healthcare system to receive COPD care. Interviews were conducted via telephone and were transcribed using NVIVO software. Transcribed interviews were then coded using content analysis. Results - Participants (N = 27) ranged in age from 59 to 85 years of age, 4 (14.8%) were women, and 24 (88.9%) identified as white. - Most veterans, 12 (44.4%) had an 11 to 30 minute drive to their primary care provider and 13 (48.1%) had a greater than 1 hour drive time to the pulmonologist. - Twenty-four (88.9%) participants had at least one exacerbation in the past 12 months, 10 (41.7%) of which ended up hospitalized. - Elucidative quotes are listed in Table 1, which were used to identify general themes. - General Themes: Barriers Primary care provider turnover and shortages, physical limitations related to chronic medical conditions, discomfort with virtual care, long appointment wait times and limited scheduling flexibility, complex referral processes, transportation challenges, and weather-related difficulties. Facilitators Self-motivation, self-advocacy, support from family and friends, timely scheduling and communication, trust and continuity with healthcare providers, and familiarity with or outside assistance in using technology facilitated access to COPD care. Recommendations Participants suggested improving technology-related education, providing necessary technology equipment, enhancing access to clinic appointments, supporting provider continuity, and fostering timely communication between patients and healthcare teams. Conclusion This study identified several barriers, facilitators, and patient-generated recommendations to improve COPD-related care for rural veterans. Participants described physical limitations, lack of provider continuity, and challenges with technology navigation as key barriers. Facilitating factors included strong family support and a sense of self-sufficiency that motivated engagement in care. Recommendations for improvement emphasized enhanced communication, greater patient education, and additional support for using technology in healthcare delivery. This abstract is funded by: NIH