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1285 citation(s) found for "O'Neil, J".

Analysis of racial variations in disease characteristics, treatment patterns, and outcomes of patients with chronic lymphocytic leukemia
Nabhan, Chadi , Chaffee, Kari G. , Galanina, Natalie , Achenbach, Sara J., Schwager, Susan M., Rabe, Kari G. , Slager, Susan L. , Kay, Neil E. , Shanafelt, Tait D.

American Journal of Hematology | March 25, 2016 | Volume: 91 | Issue: 7 | Pages: 677-680

10.1002/ajh.24374 | PMID 27013143 Get It

The impact of race on outcomes of patients with chronic lymphocytic leukemia (CLL), the most common leukemia in the west, is not well studied. We aimed to understand racial variations in clinical and disease characteristics, treatment patterns, and outcomes in patients with CLL. We utilized the Mayo Clinic CLL database to perform an analysis of these characteristics and natural history of non‐white (NW) compared to white (W) CLL patients. Differences by race in median overall survival (OS) and time‐to‐first‐treatment (TTFT) were investigated. Of the 4215 CLL patients, 4114 (97.6%) were W and 101 (2.4%) were NW. NW patients were younger (median age at diagnosis 59.4 vs. 63.4; P = 0.003) and more likely to have an elevated LDH (28.0% vs. 16.2%; P = 0.02). No differences in prognostic parameters were noted. No major differences were observed in treatment selection. OS and TTFT were similar between both groups. In the largest analysis of NW‐CLL patients in North America, and contrary to historical retrospective reports, W and NW patients appear to have comparable outcomes when treated similarly. These findings suggest previously noted outcome differences may be due to disparities in access to care and management rather than differences in disease biology. Am. J. Hematol. 91:677–680, 2016. © 2016 Wiley Periodicals, Inc.
Blood lipids and prostate cancer: a Mendelian randomization analysis
Bonilla, Carolina , Holly, Jeff M.P. , Perks, Claire M. , Davies, Neil M , Haycock, Philip , Richards, J. Brent , Eeles, Rosalind A. , Easton, Doug , Olama, Ali Amin Al , Benlloch, Sara, MacInnis, Robert J. , Grönberg, Henrik , Haiman, Christopher A. , Schleutker, Johanna , Nordestgaard, Børge G. , Travis, Ruth C. , Neal, David E. , Pashayan, Nora , Stanford, Janet L. , Blot, William J. , Thibodeau, Stephen N. , Maier, Christiane, Kibel, Adam S. , Brenner, Hermann , Park, Jong, Kaneva, Radka , Batra, Jyotsna , Teixeira, Manuel R. , Micheal, Agnieszka, Pandha, Hardev , Smith, George Davey , Lewis, Sarah J. , Martin, Richard M. , Thibodeau, Stephen, Bull, Caroline J. , Yu, Oriana Hoi Yun , Kote‐Jarai, Zsofia , Muir, Kenneth , Giles, Graham G. , Wiklund, Fredrik E. , Khaw, Kay‐Tee , Cybulski, Cezary , Cannon‐Albright, Lisa , Teixeira, Manuel R , Eeles, Rosalind A , Schleutker, Johanna , Travis, Ruth C , Pashayan, Nora , Maclnnis, Robert , Haycock, Philip , Brenner, Hermann , Martin, Richard M , Batra, Jyotsna , Davey Smith, George

Cancer Medicine | March 19, 2016 | Volume: 5 | Issue: 6 | Pages: 1125-1136

10.1002/cam4.695 | PMID 26992435 Get It

AbstractGenetic risk scores were used as unconfounded instruments for specific lipid traits (Mendelian randomization) to assess whether circulating lipids causally influence prostate cancer risk. Data from 22,249 prostate cancer cases and 22,133 controls from 22 studies within the international PRACTICAL consortium were analyzed. Allele scores based on single nucleotide polymorphisms (SNPs) previously reported to be uniquely associated with each of low‐density lipoprotein (LDL), high‐density lipoprotein (HDL), and triglyceride (TG) levels, were first validated in an independent dataset, and then entered into logistic regression models to estimate the presence (and direction) of any causal effect of each lipid trait on prostate cancer risk. There was weak evidence for an association between the LDL genetic score and cancer grade: the odds ratio (OR) per genetically instrumented standard deviation (SD) in LDL, comparing high‐ (≥7 Gleason score) versus low‐grade (<7 Gleason score) cancers was 1.50 (95% CI: 0.92, 2.46; P = 0.11). A genetically instrumented SD increase in TGs was weakly associated with stage: the OR for advanced versus localized cancer per unit increase in genetic risk score was 1.68 (95% CI: 0.95, 3.00; P = 0.08). The rs12916‐T variant in 3‐hydroxy‐3‐methylglutaryl‐CoA reductase (HMGCR) was inversely associated with prostate cancer (OR: 0.97; 95% CI: 0.94, 1.00; P = 0.03). In conclusion, circulating lipids, instrumented by our genetic risk scores, did not appear to alter prostate cancer risk. We found weak evidence that higher LDL and TG levels increase aggressive prostate cancer risk, and that a variant in HMGCR (that mimics the LDL lowering effect of statin drugs) reduces risk. However, inferences are limited by sample size and evidence of pleiotropy.
Robotics in otolaryngology and head and neck surgery: Recommendations for training and credentialing: A report of the 2015 AHNS education committee, AAO‐HNS robotic task force and AAO‐HNS sleep disorders committee
Magnuson, J. Scott , Duvvuri, Umamaheswar , Ghanem, Tamer , Yaremchuk, Kathleen , Goldenberg, David , Moore, Eric J. , Netterville, James L. , Weinstein, Gregory S., Richmon, Jeremy D. , Gross, Neil D , Holsinger, F. Christopher , Genden, Eric Michael , Miller, Matthew C. , Morris, Luc G T , Richmon, Jeremy D

Head & Neck | March 7, 2016 | Volume: 38 | Issue: S1 | Pages: No page available

10.1002/hed.24207 | PMID 26950771 Get It

AbstractTraining and credentialing for robotic surgery in otolaryngology ‐ head and neck surgery is currently not standardized, but rather relies heavily on industry guidance. This manuscript represents a comprehensive review of this increasingly important topic and outlines clear recommendations to better standardize the practice. The recommendations provided can be used as a reference by individuals and institutions alike, and are expected to evolve over time. © 2016 Wiley Periodicals, Inc. Head Neck 38: E151–E158,
Sex-Specific Differences at Presentation and Outcomes Among Patients Undergoing Transcatheter Aortic Valve Replacement
Kodali, Susheel , Williams, Mathew , Doshi, Darshan , Hahn, Rebecca T. , Humphries, Karin H. , Douglas, Pamela S. , Mack, Michael J. , Xu, Ke , Svensson, Lars G. , Thourani, Vinod H. , Tuzcu, E. Murat , Weissman, Neil J., Leon, Martin B. , Kirtane, Ajay J. , Hahn, Rebecca T , Nkomo, Vuyisile T. , Cohen, David Jonathan , Douglas, Pamela S , Williams, Mathew

Annals of Internal Medicine | February 22, 2016 | Volume: 164 | Issue: 6 | Pages: 377

10.7326/m15-0121 | PMID 26903039 Get It

Harnessing next-generation informatics for personalizing medicine: a report from AMIA’s 2014 Health Policy Invitational Meeting
Wiley, Laura K. , Tarczy‐Hornoch, Peter , Denny, Joshua C. , Freimuth, Robert R. , Overby, Casey Lynnette, Martin, Ross D., Taylor, Casey Overby , Shah, Nigam H. , Sarkar, Indra Neil , Denny, Joshua C , Freimuth, Robert R , Wiley, Laura K

Journal of the American Medical Informatics Association | February 6, 2016 | Volume: 23 | Issue: 2 | Pages: 413-419

10.1093/jamia/ocv111 | PMID 26911808 Get It

Abstract The American Medical Informatics Association convened the 2014 Health Policy Invitational Meeting to develop recommendations for updates to current policies and to establish an informatics research agenda for personalizing medicine. In particular, the meeting focused on discussing informatics challenges related to personalizing care through the integration of genomic or other high-volume biomolecular data with data from clinical systems to make health care more efficient and effective. This report summarizes the findings ( n = 6) and recommendations ( n = 15) from the policy meeting, which were clustered into 3 broad areas: (1) policies governing data access for research and personalization of care; (2) policy and research needs for evolving data interpretation and knowledge representation; and (3) policy and research needs to ensure data integrity and preservation. The meeting outcome underscored the need to address a number of important policy and technical considerations in order to realize the potential of personalized or precision medicine in actual clinical contexts.
The Dohner fluorescence in situ hybridization prognostic classification of chronic lymphocytic leukaemia (CLL): the CLL Research Consortium experience
Dyke, Daniel L. Van , Werner, Lillian , Rassenti, Laura Z., Ghia, Emanuella, Heerema, Nyla A. , Cin, Paola Dal , Aquila, Marie Dell, Sreekantaiah, Chandrika, Greaves, Andrew, Van Dyke, Daniel L, Neuberg, Donna , Kipps, Thomas J. , Kay, Neil E.

British Journal of Haematology | February 5, 2016 | Volume: 173 | Issue: 1 | Pages: 105-113

10.1111/bjh.13933 | PMID 26848054 Get It

SummaryThis study revisited the Dohner prognostic hierarchy in a cohort of 1585 well‐documented patients with chronic lymphocytic leukaemia. The duration of both time to first treatment (TTFT) and overall survival (OS) were significantly longer than observed previously, and this is at least partly due to improved therapeutic options. Deletion 13q remains the most favourable prognostic group with median TTFT and OS from fluorescence in situ hybridization (FISH) testing of 72 months and >12 years, respectively. Deletion 11q had the poorest median TTFT (22 months) and 17p deletion the poorest median OS (5 years). The percentages of abnormal nuclei were significantly associated with differential TTFT for the trisomy 12, 13q and 17p deletion cohorts but not for the 11q deletion cohort. From the date of the first FISH study, patients with >85% 13q deletion nuclei had a notably shorter TTFT (24 months). Patients with ≤20% 17p deletion nuclei had longer median TTFT and OS from the date of the first FISH study (44 months and 11 years), and were more likely to be IGHV mutated.
Recurrent Mutations of Chromatin-Remodeling Genes and Kinase Receptors in Pheochromocytomas and Paragangliomas
Qin, Yuejuan, Cheng, Zi-Ming, Gao, Qing , Silva, Gustavo M. , Prasad, Manju L. , Ocal, Idris Tolgay, Rao, Sarika , Aronin, Neil , Barontini, Marta, Bruder, Jan , Reddick, Robert L., Aguiar, Ricardo C.T. , Ocal, I Tolgay, Toledo, Rodrigo A , Iwata, Shintaro , Chen, Yidong , Dahia, Patricia L. M. , Rao, Sarika N

Clinical Cancer Research | December 23, 2015 | Volume: 22 | Issue: 9 | Pages: 2301-2310

10.1158/1078-0432.ccr-15-1841 | PMID 26700204 Get It

Abstract Purpose: Pheochromocytomas and paragangliomas (PPGL) are genetically heterogeneous tumors of neural crest origin, but the molecular basis of most PPGLs is unknown. Experimental Design: We performed exome or transcriptome sequencing of 43 samples from 41 patients. A validation set of 136 PPGLs was used for amplicon-specific resequencing. In addition, a subset of these tumors was subjected to microarray-based transcription, protein expression, and histone methylation analysis by Western blotting or immunohistochemistry. In vitro analysis of mutants was performed in cell lines. Results: We detected mutations in chromatin-remodeling genes, including histone-methyltransferases, histone-demethylases, and histones in 11 samples from 8 patients (20%). In particular, we characterized a new cancer syndrome involving PPGLs and giant cell tumors of bone (GCT) caused by a postzygotic G34W mutation of the histone 3.3 gene, H3F3A. Furthermore, mutations in kinase genes were detected in samples from 15 patients (37%). Among those, a novel germline kinase domain mutation of MERTK detected in a patient with PPGL and medullary thyroid carcinoma was found to activate signaling downstream of this receptor. Recurrent germline and somatic mutations were also detected in MET, including a familial case and sporadic PPGLs. Importantly, in each of these three genes, mutations were also detected in the validation group. In addition, a somatic oncogenic hotspot FGFR1 mutation was found in a sporadic tumor. Conclusions: This study implicates chromatin-remodeling and kinase variants as frequent genetic events in PPGLs, many of which have no other known germline driver mutation. MERTK, MET, and H3F3A emerge as novel PPGL susceptibility genes. Clin Cancer Res; 22(9); 2301–10. ©2015 AACR.
The Computational Fluid Dynamics Rupture Challenge 2013—Phase II: Variability of Hemodynamic Simulations in Two Intracranial Aneurysms
Berg, Philipp , Roloff, Christoph, Beuing, Oliver , Voß, Samuel , Sugiyama, Shin‐ichiro , Aristokleous, Nicolas , Αnayiotos, Αndreas , Ashton, Neil , Revell, Alistair , Bressloff, Neil W. , Brown, Alistair, Chung, Bong Jae , Copelli, Gabriele, Fu, Wenyu , Geers, Arjan J. , Hodis, Simona , Dragomir‐Daescu, Dan , Nordahl, Emily Rose, Suzen, Yildirim , Khan, Muhammad Owais , Valen‐Sendstad, Kristian , Kono, Kenichi , Menon, Prahlad G. , Albal, Priti G., Mierka, Otto , Münster, Raphael , Bonnefous, Odile , Osman, Jan , Goubergrits, Leonid , Pallarès, Jordi , Cito, Salvatore , Passalacqua, Alberto , Pişkin, Şenol , Pekkan, Kerem , Ramalho, Susana, Marques, N. P. C. , Sanchi, Stéphane, Schumacher, Kristopher R., Sturgeon, Jess, Švihlová, Helena , Hron, J. , Usera, Gabriel , Mendina, Mariana , Xiang, Jianping , Steinman, David A. , Cebral, Juan R. , Qiao, Aike , Morales, Hernán G. , Meng, Hui , Janiga, Gábor , Hron, Jaroslav , Švihlová, Helena

Journal of Biomechanical Engineering | October 16, 2015 | Volume: 137 | Issue: 12 | Pages: No page available

10.1115/1.4031794 | PMID 26473395 Get It

With the increased availability of computational resources, the past decade has seen a rise in the use of computational fluid dynamics (CFD) for medical applications. There has been an increase in the application of CFD to attempt to predict the rupture of intracranial aneurysms, however, while many hemodynamic parameters can be obtained from these computations, to date, no consistent methodology for the prediction of the rupture has been identified. One particular challenge to CFD is that many factors contribute to its accuracy; the mesh resolution and spatial/temporal discretization can alone contribute to a variation in accuracy. This failure to identify the importance of these factors and identify a methodology for the prediction of ruptures has limited the acceptance of CFD among physicians for rupture prediction. The International CFD Rupture Challenge 2013 seeks to comment on the sensitivity of these various CFD assumptions to predict the rupture by undertaking a comparison of the rupture and blood-flow predictions from a wide range of independent participants utilizing a range of CFD approaches. Twenty-six groups from 15 countries took part in the challenge. Participants were provided with surface models of two intracranial aneurysms and asked to carry out the corresponding hemodynamics simulations, free to choose their own mesh, solver, and temporal discretization. They were requested to submit velocity and pressure predictions along the centerline and on specified planes. The first phase of the challenge, described in a separate paper, was aimed at predicting which of the two aneurysms had previously ruptured and where the rupture site was located. The second phase, described in this paper, aims to assess the variability of the solutions and the sensitivity to the modeling assumptions. Participants were free to choose boundary conditions in the first phase, whereas they were prescribed in the second phase but all other CFD modeling parameters were not prescribed. In order to compare the computational results of one representative group with experimental results, steady-flow measurements using particle image velocimetry (PIV) were carried out in a silicone model of one of the provided aneurysms. Approximately 80% of the participating groups generated similar results. Both velocity and pressure computations were in good agreement with each other for cycle-averaged and peak-systolic predictions. Most apparent “outliers” (results that stand out of the collective) were observed to have underestimated velocity levels compared to the majority of solutions, but nevertheless identified comparable flow structures. In only two cases, the results deviate by over 35% from the mean solution of all the participants. Results of steady CFD simulations of the representative group and PIV experiments were in good agreement. The study demonstrated that while a range of numerical schemes, mesh resolution, and solvers was used, similar flow predictions were observed in the majority of cases. To further validate the computational results, it is suggested that time-dependent measurements should be conducted in the future. However, it is recognized that this study does not include the biological aspects of the aneurysm, which needs to be considered to be able to more precisely identify the specific rupture risk of an intracranial aneurysm.
Surgical management of lateral skull base defects
Patel, Neil , Modest, Mara C., Brobst, Tyler D. , Carlson, Matthew L. , Moore, Eric J. , Janus, Jeffrey R. , Price, Daniel L.

The Laryngoscope | October 15, 2015 | Volume: 126 | Issue: 8 | Pages: 1911-1917

10.1002/lary.25717 | PMID 26466854 Get It

Objectives/HypothesisWe sought to analyze key factors that influence the management of lateral skull base defects and implement an algorithm to improve outcomes of reconstruction.Study DesignRetrospective chart review.SettingSingle tertiary academic referral center.MethodsAdults who underwent temporal bone resection were included. Variables included tumor characteristics, ablative procedure, reconstructive method, and wound complications.ResultsSeventy‐one patients were studied. Lateral temporal bone resection was performed in 55 patients (77%), subtotal temporal bone resection in 14 (20%), and total petrosectomy in two (3%). Primary closure was achieved in 46 patients (35%), with rotational muscle flaps in 21 (46%). The pectoralis major myocutaneous flap (PMMF) was used in nine patients (13%) without major complications. Single‐stage free tissue transfer was undertaken in 10 patients (14%) with no flap failures. Primary closure was achieved in 16 of 32 of previously untreated cases (50%) compared to nine of 39 cases of previously treated disease (23%) (P = 0.03). Pedicled or free flaps were used in 18 of 39 cases of previously treated disease (46%) compared to three of 32 previously untreated cases (9%) (P < 0.001). Pedicled or free flaps were used in 13 of 22 cases (59%) in which partial or total auriculectomy was performed, whereas primary closure was achieved in 39 of 49 cases (80%) in which the pinna was preserved (P < 0.001).ConclusionAdvanced tumors that require adjuvant therapy, revision cases for recurrent disease, and cases involving auriculectomy warrant free flap or PMMF reconstruction, with the latter preferred in poor free flap candidates.Level of Evidence4. Laryngoscope, 126:1911–1917, 2016