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587 citation(s) found for "Xu, Ding".

An Annual Review of Important Apheresis Articles From the American Society for Apheresis Attending Physician Subcommittee
Tanhehco, Yvette C. , Alsammak, Mohamed , Wu, Ding Wen , Costa, Victoria, Chhibber, Vishesh, Li, Yanhua , Lu, Wen , Stephens, Laura D. , Noland, Daniel K., Martin, Marisa C. Saint, Zantek, Nicole D. , Becker, Joanne , Wehrli, Gay , Levenbrown, Yosef , Lu, Wen , Stephens, Laura , Zantek, Nicole D , Wu, Ding Wen , Mattiazzi, Adela D. , Singh, Nirupama

Journal of Clinical Apheresis | November 20, 2024 | Volume: 39 | Issue: 6 | Pages: No page available

10.1002/jca.22152 | PMID 39564880 Get It

ABSTRACTIn this first annual review article, the American Society for Apheresis (ASFA) Attending Physician Subcommittee (APSc) of the Physicians' Committee (PC) curated key apheresis literature in 2023 and presented their choices for the 10 most seminal apheresis articles. PubMed and OVID search engines were used to identify manuscripts from four topic areas: donor apheresis, therapeutic apheresis, education, and cellular therapy. To further identify seminal criteria, they had to present at least one of the following: novel findings, practice‐altering outcomes, international scope, randomized controlled trial, relevant to current clinical practice, and/or provide evidence for category III or IV indications based on the ASFA ninth special issue of the Guidelines on the Use of Therapeutic Apheresis in Clinical Practice‐Evidence‐Based Approach. Inclusion criteria included: full‐length, peer‐reviewed, English language, and human subjects. Case reports, review articles, and meta‐analyses were excluded.
DDDR-10. MYELOID CELLS COORDINATELY INDUCE GLIOMA CELL-INTRINSIC AND -EXTRINSIC PATHWAYS FOR CHEMORESISTANCE VIA GP130 SIGNALING
Cheng, Jiying, Li, Min , Motta, Edyta, Barci, Deivi, Song, Wangyang, Zhou, Ding , Zhu, Sihan, Yang, Anru, Vaillant, Brian, Spiegel-Kreinecker, Sabine, Katayama, Hiroshi , Flüh, Charlotte , Glaß, Rainer , Li, Gen , Imhof, Axel , Forné, Ignasi , Zhang, Nu , Bhat, Krishna , Kälin, Roland E.

Neuro-Oncology | November 11, 2024 | Volume: 26 | Issue: Supplement_8 | Pages: viii127-viii127

10.1093/neuonc/noae165.0495 Get It

Abstract The DNA damage response (DDR) and the blood tumor barrier (BTB) restrict chemotherapeutic success for primary brain tumors like glioblastoma (GBM). Coherently, GBM almost invariably relapse with fatal outcome. We here show that interaction of GBM and myeloid cells simultaneously induces chemoresistance on the genetic and the vascular level by activating GP130 receptor signaling, which can be addressed therapeutically. We performed transcriptomic and immunohistochemical screens with human brain material, pharmacological experiments with a humanized organotypic GBM model, proteomics and cell-based assays and observed that nanomolar concentrations of the signaling peptide Humanin promoted TMZ resistance through DDR activation. GBM mouse models recapitulating intratumoral Humanin-release showed accelerated BTB formation. Genetic analysis of pericyte to endothelial cell signaling in transgenic mice revealed increased GP130 activation in Humanin releasing tumors as compared to controls. GP130 blockade attenuated both DDR activity and BTB formation resulting in improved preclinical chemotherapeutic efficacy. Altogether, we describe an overarching mechanism for TMZ resistance and outline a translatable strategy with predictive markers to improve chemotherapy for GBM.
Rate of clinically significant red blood cell antibody seroconversion in pregnancy
Ding, Jia Jennifer, Abels, Elizabeth , Jacobs, Jeremy W. , Culhane, Jennifer F. , Lundsberg, Lisbet S. , Partridge, Caitlin, Denoble, Anna E. , Kohari, Katherine , Jacobs, Jeremy W

The Journal of Maternal-Fetal & Neonatal Medicine | October 28, 2024 | Volume: 37 | Issue: 1 | Pages: No page available

10.1080/14767058.2024.2419370 | PMID 39462637 Get It

Explore the feasibility of using spot‐scanning proton arc therapy for a synchrotron accelerator‐based proton therapy system – A simulation study
Cong, Xiaoda , Liu, Gang , Liu, Peilin , Zhao, Lewei , Li, Xiaoqiang , Ding, Xuanfeng , Shen, Jiajian , Liu, Peilin, Chen, Shupeng , Shen, Jiajian

Journal of Applied Clinical Medical Physics | September 17, 2024 | Volume: 26 | Issue: 1 | Pages: No page available

10.1002/acm2.14526 | PMID 39287609 Get It

AbstractObjectiveThe aim of this study was to evaluate the feasibility and plan quality of spot‐scanning proton arc therapy (SPArc) using a synchrotron‐accelerator‐based proton therapy system compared to intensity‐modulated proton therapy (IMPT).ApproachFive representative disease sites, including head and neck, lung, liver, brain chordoma, and prostate cancers, were retrospectively selected. Both IMPT and SPArc plans are generated with the HITACHI ProBEAT PBS system's minimum MU constraints and physics beam model. The SPArc plans are generated with 2.5° sampling frequency. The static delivery time was simulated based on the previously published synchrotron delivery sequence model, and the dynamic delivery time was simulated using a proton arc gantry mechanical model integrated with the synchrotron delivery sequence. Both dosimetric plan quality and delivery efficiency are evaluated.Main resultsA superior plan quality is reached compared with the IMPT plans generated for the same disease site. However, a relatively prolonged static and dynamic delivery time post new challenge, as static time increased by 49.22% and dynamic time 59.10% on average.SignificanceThis study presents the first simulation results of delivering the SPArc plans using a synchrotron‐accelerated proton therapy system. The result shows its feasibility and limitations, which could guide future development.
Enhanced Two-Step LAMP-CRISPR Assay with an Engineered Zst Polymerase for Contamination-Free and Ultrasensitive DNA Detection
Xie, Yi , Zhang, Yuqian , Cao, Liqin , Shi, Jun , Ding, Xiong , Yin, Kun , Ding, Xiong , Yin, Kun , Jiang, Kai , Guo, Xiaokui

Analytical Chemistry | September 9, 2024 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.1021/acs.analchem.4c03965 | PMID 39250834 Get It

Deconvolution of the tumor-educated platelet transcriptome reveals activated platelet and inflammatory cell transcript signatures
Zhang, Ze-Yan , Ding, Yingwen , Graciani, Melanie, Sahimi, Ali , Chen, Ting , Li, Shuai , Wong, Kwok-Kin, Ramkhelawon, Bhama , Bhat, Krishna , Bhat, Krishna Pl, Karp, Jerome M. , Modrek, Aram Sandaldjian , Ezhilarasan, Ravesanker , Silvestro, Michele , Wong, Kwok‐Kin , Sulman, Erik P.

JCI Insight | August 27, 2024 | Volume: 9 | Issue: 19 | Pages: No page available

10.1172/jci.insight.178719 | PMID 39190500 Get It

Tumor-educated platelets (TEPs) are a potential method of liquid biopsy for the diagnosis and monitoring of cancer. However, the mechanism underlying tumor education of platelets is not known, and transcripts associated with TEPs are often not tumor-associated transcripts. We demonstrated that direct tumor transfer of transcripts to circulating platelets is an unlikely source of the TEP signal. We used CDSeq, a latent Dirichlet allocation algorithm, to deconvolute the TEP signal in blood samples from patients with glioblastoma. We demonstrated that a substantial proportion of transcripts in the platelet transcriptome are derived from nonplatelet cells, and the use of this algorithm allows the removal of contaminant transcripts. Furthermore, we used the results of this algorithm to demonstrate that TEPs represent a subset of more activated platelets, which also contain transcripts normally associated with nonplatelet inflammatory cells, suggesting that these inflammatory cells, possibly in the tumor microenvironment, transfer transcripts to platelets that are then found in circulation. Our analysis suggests a useful and efficient method of processing TEP transcriptomic data to enable the isolation of a unique TEP signal associated with specific tumors.
Stereotactic Radiosurgery With Versus Without Neoadjuvant Endovascular Embolization for Brain Arteriovenous Malformations With Associated Intracranial Aneurysms
Becerril‐Gaitan, Andrea , Nguyen, Justin H. , Lee, Cheng‐Chia , Ding, Dale , Woo, Shiao Y. , Warnick, Ronald E. , Feliciano, Caleb , Rodriguez-Mercado, R, Cockroft, Kevin M. , Simon, Scott D. , Lee, John, Sheehan, Jason P. , Chen, Ching-Jen , Ding, Dale , Nguyen, Justin, Cifarelli, Christopher P. , Liščák, Roman , Williams, Brian J. , Yusuf, Mehran Behruj , Trifiletti, Daniel M. , Mathieu, David , Kondziolka, Douglas , Lee, John, Chen, Ching‐Jen

Neurosurgery | August 22, 2024 | Volume: 96 | Issue: 4 | Pages: 787-793

10.1227/neu.0000000000003152 | PMID 39171929 Get It

BACKGROUND AND OBJECTIVES: Stereotactic radiosurgery (SRS) with neoadjuvant embolization is a treatment strategy for brain arteriovenous malformations (AVMs), especially for those with large nidal volume or concomitant aneurysms. The aim of this study was to assess the effects of pre-SRS embolization in AVMs with an associated intracranial aneurysm (IA). METHODS: The International Radiosurgery Research Foundation AVM database from 1987 to 2018 was retrospectively reviewed. SRS-treated AVMs with IAs were included. Patients were categorized into those treated with upfront embolization (E + SRS) vs stand-alone SRS (SRS). Primary end point was a favorable outcome (AVM obliteration + no permanent radiation-induced changes or post-SRS hemorrhage). Secondary outcomes included AVM obliteration, mortality, follow-up modified Rankin Scale, post-SRS hemorrhage, and radiation-induced changes. RESULTS: Forty four AVM patients with associated IAs were included, of which 23 (52.3%) underwent pre-SRS embolization and 21 (47.7%) SRS only. Significant differences between the E + SRS vs SRS groups were found for AVM maximum diameter (1.5 ± 0.5 vs 1.1 ± 0.4 cm 3 , P = .019) and SRS treatment volume (9.3 ± 8.3 vs 4.3 ± 3.3 cm 3 , P = .025). A favorable outcome was achieved in 45.4% of patients in the E + SRS group and 38.1% in the SRS group ( P = .625). Obliteration rates were comparable (56.5% for E + SRS vs 47.6% for SRS, P = .555), whereas a higher mortality rate was found in the SRS group (19.1% vs 0%, P = .048). After adjusting for AVM maximum diameter, SRS treatment volume, and maximum radiation dose, the likelihood of achieving favorable outcome and AVM obliteration did not differ between groups ( P = .475 and P = .820, respectively). CONCLUSION: The likelihood of a favorable outcome and AVM obliteration after SRS with neoadjuvant embolization in AVMs with concomitant IA seems to be comparable with stand-alone SRS, even after adjusting for AVM volume and SRS maximum dose. However, the increased mortality among the stand-alone SRS group and relatively low risk of embolization-related complications suggest that these patients may benefit from a combined treatment approach.
The Future of Healthcare Delivery: Three Insights from Supply Chain Management
Francis, James R. , Bagchi, Ann D. , Melamed, Benjamin , Hill, Diane, Baveja, Alok , Ding, Xin David

Management and Business Review | August 21, 2024 | Volume: 3 | Issue: 4 | Pages: 28-36

10.1177/2694105820230304007 Get It

The COVID-19 pandemic dramatically exposed the vulnerabilities of supply chains in the healthcare sector. James R. Francis, Alok Baveja, Xin (David) Ding, Ann D. Bagchi, Benjamin Melamed, and Diane Hill conducted an in-depth study of how Mayo Clinic addressed these challenges and present three strategies for the future of the healthcare industry.
Time structures of proton pencil beam scanning delivery on a microsecond scale measured with a pixelated semiconductor detector Timepix3
Ding, Xuanfeng , Liang, Xiaoying , Oancea, Cristina , Wang, Peilong, Rule, William G., Liu, Wei , Shen, Jiajian , Liang, Xiaoying , Liu, Wei , Shen, Jiajian , Charyyev, Serdar , Wang, Peilong, Bues, Martin , Lin, Liyong

Journal of Applied Clinical Medical Physics | August 13, 2024 | Volume: 25 | Issue: 9 | Pages: No page available

10.1002/acm2.14486 | PMID 39137008 Get It

AbstractPurposeThe time structures of proton spot delivery in proton pencil beam scanning (PBS) radiation therapy are essential in many clinical applications. This study aims to characterize the time structures of proton PBS delivered by both synchrotron and synchrocyclotron accelerators using a non‐invasive technique based on scattered particle tracking.MethodsA pixelated semiconductor detector, AdvaPIX‐Timepix3, with a temporal resolution of 1.56 ns, was employed to measure time of arrival of secondary particles generated by a proton beam. The detector was placed laterally to the high‐flux area of the beam in order to allow for single particle detection and not interfere with the treatment. The detector recorded counts of radiation events, their deposited energy and the timestamp associated with the single events. Individual recorded events and their temporal characteristics were used to analyze beam time structures, including energy layer switch time, magnet switch time, spot switch time, and the scanning speeds in the x and y directions. All the measurements were repeated 30 times on three dates, reducing statistical uncertainty.ResultsThe uncertainty of the measured energy layer switch times, magnet switch time, and the spot switch time were all within 1% of average values. The scanning speeds uncertainties were within 1.5% and are more precise than previously reported results. The measurements also revealed continuous sub‐milliseconds proton spills at a low dose rate for the synchrotron accelerator and radiofrequency pulses at 7 µs and 1 ms repetition time for the synchrocyclotron accelerator.ConclusionThe AdvaPIX‐Timepix3 detector can be used to directly measure and monitor time structures on microseconds scale of the PBS proton beam delivery. This method yielded results with high precision and is completely independent of the machine log files.
Accurate and Automated Genotyping of the CFTR Poly-T/TG Tract with CFTR-TIPS
Ding, Qiliang , Hofich, Christopher D , Kellogg, Tifani B., Kuennen, Rhonda K., Paxton, Kaitlin N., Thieke, Sarah, Rumilla, Kandelaria M., Hasadsri, Linda , Thieke, Sarah M, Hasadsri, Linda

International Journal of Molecular Sciences | August 5, 2024 | Volume: 25 | Issue: 15 | Pages: 8533

10.3390/ijms25158533 | PMID 39126101 Get It

Cystic fibrosis is caused by biallelic pathogenic variants in the CFTR gene, which contains a polymorphic (TG)mTn sequence (the “poly-T/TG tract”) in intron 9. While T9 and T7 alleles are benign, T5 alleles with longer TG repeats, e.g., (TG)12T5 and (TG)13T5, are clinically significant. Thus, professional medical societies currently recommend reporting the TG repeat size when T5 is detected. Sanger sequencing is a cost-effective method of genotyping the (TG)mTn tract; however, its polymorphic length substantially complicates data analysis. We developed CFTR-TIPS, a freely available web-based software tool that infers the (TG)mTn genotype from Sanger sequencing data. This tool detects the (TG)mTn tract in the chromatograms, quantifies goodness of fit with expected patterns, and visualizes the results in a graphical user interface. It is broadly compatible with any Sanger chromatogram that contains the (TG)mTn tract ± 15 bp. We evaluated CFTR-TIPS using 835 clinical samples previously analyzed in a CLIA-certified, CAP-accredited laboratory. When operated fully automatically, CFTR-TIPS achieved 99.8% concordance with our clinically validated manual workflow, while generally taking less than 10 s per sample. There were two discordant samples: one due to a co-occurring heterozygous duplication that confounded the tool and the other due to incomplete (TG)mTn tract detection in the reverse chromatogram. No clinically significant misclassifications were observed. CFTR-TIPS is a free, accurate, and rapid tool for CFTR (TG)mTn tract genotyping using cost-effective Sanger sequencing. This tool is suitable both for automated use and as an aid to manual review to enhance accuracy and reduce analysis time.