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Coltro, Giacomo

https://orcid.org/0000-0002-0816-5462

Mayo Clinic

Azienda Ospedaliero-Universitaria Careggi

Citations 20

Prognostic Significance and Clinical Correlations of Myeloid Mutations in Myelofibrosis Based on Their Functional Class
Boldrini, Valentina , Rotunno, Giada, Maccari, Chiara , Gangat, Naseema , Tefferi, Ayalew , Guglielmelli, Paola , Coltro, Giacomo , Loscocco, Giuseppe Gaetano , Mannelli, Francesco , Vannucchi, Alessandro M.

Blood | December 1, 2023 | Volume: 142 | Issue: Supplement 1 | Pages: 4533-4533

10.1182/blood-2023-189571 Get It

Background: In addition to the driver mutations JAK2, CALR and MPL, patients (pts) with primary myelofibrosis (PMF) may also express mutations in a number of genes frequently associated with myeloid neoplasms. These genes encode regulators of chromatin modification and DNA methylation, RNA splicing and transcription, as well as oncogenes and signal transduction. In pts with PMF, including those with prefibrotic (pre-)-PMF, selected mutations were shown to deserve prognostic relevance, and led to the development of molecular integrated, or exclusive, scores (such as MIPSS70, MIPSS70-plus, GIPSS and others). Aim: The aim of the study was to correlate the type of mutations, clustered in relation to their known functional classes, with hematological and clinical correlates, and outcome in a large population of molecularly annotated pts with PMF. Patients and Methods: All pts with a confirmed ICC 2022 diagnosis of PMF from the database at CRIMM (Florence), for whom mutation analysis of a panel of 40 myeloid neoplasm-associated genes performed by NGS (Oncomine, ThermoFisher) was available, were included in the study. Pts were stratified in 6 categories based on known function of mutated gene: spliceosome (cat. 1: SF3B1, U2AF1, SRSF2, ZRSR2), DNA methylation gene (cat. 2: TET2, DNMT3A, IDH1, IDH2, SETBP1), histone modification gene (cat. 3: ASXL1, EZH2), RAS pathway (cat. 4: NRAS, KRAS, CBL, NF1, PTPN11), transcription factor (cat. 5: RUNX1, NFE2, TP53) and “other” gene mutations (cat. 6: LNK/SH2B3). Results: A total of 286 pts with at least 1 myeloid neoplasm-associated gene mutation were included (110 prePMF, 38.5%; 176 overt PMF, 61.5%). Of these, 69 have mutations in spliceosome genes, 81 in DNA methylation genes, 95 in histone modification genes, 19 in the RAS pathway, 13 in transcription factor genes and 9 in “other” gene category. Analysis of clinical characteristics (Table) showed that Cat. 1 pts were significantly older (80.6% aged >60y, P=0.003), no difference regarding gender. There was no difference in blood counts but circulating blasts >1%, that were higher in cat 3 and 1 compared to the others (P=0.009). A G3 fibrosis was more common in cat 3 and 5 (43.5% and 50%, p<0.001). No significant difference was noticed as regarded driver mutations and karyotype abnormalities. Splenomegaly was more common in cat 3 and cat 6 (86.5% and 88.9%, respectively, p=0.015), while constitutional symptoms were enriched in cat 5 (69.2%, p=0.015). The proportion of pts with transfusion dependency was lower among those with mutations in DNA methylation genes (cat. 2) and “other” mutations (cat. 6) (21% and 22.2%, respectively, p=0.014). There was no significant difference among gene categories as regarded IPSS score, MIPSS70 score, thrombosis and bleeding events, progression to overt MF (in case of pre-PMF), transformation to AML and rate of secondary neoplasms. The median overall survival (OS) for all pts was 7.1 years (IC: 5.7-8.5), with categories 2, 4 and 5 showing the longest survival (10.7y (6.3-15.1), 11.5y (4.4-18.7), and 10.5y (2-18.9) respectively). In particular, pts in cat 2 showed significantly longer OS than pts in cat 1 (5.4y; HR 1.7, 95% CI, 1.1-2.6; p=0.021) and cat 3 (10.7 vs 6.1y; HR 1.5, 95% CI, 1-2.3). Considering that cat 1, 3, and 6 on one side, and cat 2, 4, 5 on the other, did not differ significant each to the other, we combined those categories to assess respective impact on survival. We found a statistically significant difference between the 2 groups, with pts harboring mutations in spliceosome, histone modifiers and “other” genes having significantly shortened survival (5.8y, CI 4.1-7.5; HR 1.57, CI 1.13-2.18) compared to the other categories (median survival, 10.8y, CI 7.2-14.3) (P=.007). Conclusion: Current analysis revealed distinctive clinical characteristics and survival outcomes associated with specific categories of mutated myeloid genes in pts with PMF, largely overlapping with the ICC defined “myelodysplasia-related gene mutations” category.
A JAK2V617F Variant Allele Frequency Greater Than 50% Identifies Patients with Polycythemia Vera at High Risk for Venous Thrombosis
Mannarelli, Carmela, Rossi, Elena, Ramundo, Francesco , Maccari, Chiara , Ceglie, Sara , Barbui, Tiziano , Tefferi, Ayalew , Loscocco, Giuseppe Gaetano , Guglielmelli, Paola , Mannelli, Francesco , Coltro, Giacomo , Betti, Silvia, Paoli, Chiara, Stefano, Valerio De , Vannucchi, Alessandro M.

Blood | November 24, 2021 | Volume: 138 | Issue: Supplement 1 | Pages: 237-237

10.1182/blood-2021-147869 Get It

Abstract Background: Thrombosis is the main cause of morbidity and mortality in pts with Polycythemia Vera (PV). Current risk stratification is based on 2 variables: age >60y and history of thrombosis. Additional thrombotic risk factors in PV are generic cardiovascular risk factors and leukocytosis. JAK2V617F (JAK2VF) variant allele frequency (VAF) at diagnosis is highly heterogeneous. A VAF>75% was associated with higher rate of all thrombosis after diagnosis (Vannucchi AM et al, Leukemia 2007), and a VAF ≥ 60% correlated with increased rate of venous thrombosis (VT) in high-risk pts (Guglielmelli P et al, ASH 2018); however, predictive role of JAK2VF VAF is still debated. Aim: To evaluate the impact of JAK2VF VAF on rate of arterial and venous thrombosis in PV pts. Patients and methods: A cohort of 576 strictly 2016 WHO-defined PV pts followed at Univ. of Florence (1981-2020) were included. All pts were annotated for JAK2VF VAF, determined <3 years from diagnosis, and thrombosis at diagnosis and follow-up (FU). Arterial thromboses (AT) included stroke, transient ischemic attacks, retinal artery occlusion, coronary artery disease, and peripheral arterial disease; VT included cerebral venous thrombosis, deep vein thrombosis, pulmonary embolism. Splanchnic vein thromboses (SVT) were excluded. Only first occurring event was considered. Cox proportional hazard regression model was used for univariate and multivariable analysis. Kaplan-Meier (KM) analysis was used for time-to-event assessment, compared by log-rank test. Results: Median age was 61.4 y (range, 16.2-91.8), 58.2% were male; 62% were high-risk based on current classification. Median JAK2VF VAF was 41.5% (range, 0.3-100). A total of 76 (13.2%) pts had an AT event before/at PV diagnosis and 49 (8.5%) pts had an AT during FU. As regards VT, 64 (11.1%) and 39 (6.8%) pts had a VT before/at or after PV diagnosis, respectively. We found that JAK2 VAF as a continue variable was correlated with the risk of VT in FU (p=0.003) but not with AT (p=0.8). ROC analysis to determine the best cut-off level for JAK2 VAF predicting VT had an AUC of 0.72 and a best cut-off value of VAF=50%. VT at FU were significantly enriched in pts with VAF >50%: 14.5% versus 2.4%, p=<0.0001. VT -free survival (VT-FS) by KM was significantly shorter in the presence of a JAK2 VAF >50% (HR 4, CI 1.9-8.6, p<0.0001) (Figure 1A), whereas no difference was found for AT (HR 0.9). In addition to JAK2VF VAF>50%, univariate analysis for VT-FS identified history of VT (HR 2.9; CI 1.4-6.1, p=0.006), leukocytosis ≥11x10 9/L (HR 1.9; CI 1.1-3.4, p=0.02) and palpable splenomegaly (HR 1.9, CI 1-3.6; p=0.04) as risk factors. Multivariable analysis confirmed VAF>50% (HR 3.8, CI 1.8-8.1, p=0.0006) and previous VT (HR 2.4, CI 1.1-5.1; p=0.02) as independent risk factors for future VT. In contrast, univariate analysis for AT-free survival (AT-FS) identified history of AT (HR 2.5; CI 1.3-4.9, p=0.007), diabetes (HR 3.3; CI 1.6-6.5, p=0.0007), hyperlipidemia (HR 3.1; CI 1.7-5.6, p=0.0003) and hypertension (HR 2, CI 1.1-3.8; p=0.03) as predictors of future AT; age >60y showed only a trend (p=0.08). Multivariable analysis for AT-FS identified diabetes (HR 2.4, CI 1.2-5; p=0.02), hyperlipidemia (HR 2.3; CI 1.2-4.3, p=0.01) and previous AT (HR 2.1, CI 1-4.2; p=0.04) as independent predictors of future AT. Validation: Our findings were validated in an independent cohort of 315 2016-WHO defined PV pts from Policlinico Gemelli, Catholic Univ., Rome. After exclusion of 26 pts with SVT, analysis was conducted on 289 pts, 38 of them with thrombosis as heralding event (21 AT and 17 VT). Multivariable analysis confirmed JAK2VF VAF >50% (HR 2.3, CI 1.03-5.0, p=0.04) and previous VT (HR 4.5, CI 2.0-10.1; p=0.0003) as independent risk factors for future VT. In pts with VAF >50%, the rate of VT at FU was 19.9% vs 7.7%, P=0.005. KM curve showed that VT-FS was significantly shorter in pts with a JAK2VF VAF >50% (HR 2.2, CI 1.2-4.2; p=0.01) (Figure 1B). Of note, impact of JAK2 VAF>50% on VT at FU was statistically significant particularly in conventionally low-risk pts, accounting for an HR of 9.4 (CI 1.2-72) and HR 3.6 (CI 1.3-10) in Florence and Rome cohorts, respectively. Conclusions: These data support JAK2VF VAF as a strong independent predictor for future venous thrombosis in PV, in association with history of prior venous events, reinforcing that AT and VT are associated with unique risk factors in pts with PV. Supported by AIRC, Project Mynerva n.21267 Figure 1 Figure 1. Disclosures Vannucchi: BMS: Honoraria, Membership on an entity's Board of Directors or advisory committees; Incyte: Honoraria, Membership on an entity's Board of Directors or advisory committees; Novartis: Honoraria, Membership on an entity's Board of Directors or advisory committees; AbbVie: Membership on an entity's Board of Directors or advisory committees.
A Myelodepletive Phenotype Is Associated with Distinctive Molecular Features and Adverse Outcomes in Patients with Myelofibrosis
Mannarelli, Carmela, Rotunno, Giada, Maccari, Chiara , Pancani, Fabiana, Tefferi, Ayalew , Coltro, Giacomo , Mannelli, Francesco , Loscocco, Giuseppe Gaetano , Atanasio, Alessandro , Vannucchi, Alessandro M. , Guglielmelli, Paola

Blood | November 23, 2021 | Volume: 138 | Issue: Supplement 1 | Pages: 1498-1498

10.1182/blood-2021-146600 Get It

Abstract Introduction: Myelofibrosis -either primary (PMF) or post-polycythemia vera/essential thrombocythemia (collectively, secondary MF [SMF])- is characterized by biologic and clinical heterogeneity, with some patients (pts) presenting with features of myeloproliferation (MyP) and others exhibiting a myelodepletive (MyD) phenotype. Although not well defined, the latter is marked by cytopenias involving one or more hematopoietic lineages, in some respects mimicking a myelodysplastic or bone marrow (BM) failure syndrome. MyD features have been associated with poor prognosis in patients with MF, but cytopenias have been usually considered individually. In the current study, we aimed at investigating the phenotypic and prognostic correlates of a MyD phenotype in a large cohort of MF patients. Methods: After IRB approval, 704 consecutive patients with WHO-defined MF referring to CRIMM (Florence), were included in the study. There were 442 (63%) PMF and 262 (37%) SMF. Cytopenias at diagnosis were defined as follows: white blood cell (WBC) <4×10 9/L, hemoglobin (Hb) <11 g/dL for male and <10 g/dL for female, platelets (Plt) <100×10 9/L. A MyD phenotype was defined by the presence of at least one cytopenia in the absence of any increase of other blood cells (WBC >15×10 9/L, Hb >16.5 g/dL for male and >16 g/dL for female, Plt >450×10 9/L). Pts not included in the MyD group were considered as having a MyP phenotype. Mutational analysis by targeted NGS was available for 594/704 patients (PMF 368/442; SMF 226/262). Results: Overall, 166 pts were diagnosed as having a MyD MF, including 108 (24%) PMF and 58 (22%) SMF. Among PMF patients, leukopenia, sex-adjusted anemia and thrombocytopenia were present in 38%, 84% and 35%, respectively; in SMF, corresponding figures were 24%, 91% and 24%. Two or more cytopenias were found in 11% and 6% of PMF and SMF patients, respectively. In PMF, a MyD phenotype was associated with male gender (P=.0468), older age (P=.0002), lower peripheral blast count (P=.0006), higher prevalence of splenomegaly (P=0.0142), constitutional symptoms (P<.0001), and BM fibrosis grade ≥2 (P<.0001). The rates of thrombosis and bleeding were not different compared to MyP PMF. MyD pts were more likely to have very high risk (VHR) karyotype abnormalities (P=.0002) and to be triple negative (TN; P<.0001); there were no correlations with JAK2 mutation status and mutant burden, CALR and MPL mutations. Among non-driver mutations, a MyD phenotype was significantly enriched in ASXL1 (P=.0074), IDH1/2 (P=0.064), N/KRAS (P=.0014), U2AF1 (P<.0001), and CUX1 (P=.0002) mutations. Karyotype abnormalities (P=.0084), VHR cytogenetics (P=.0343), CBL (P=.0.171) and U2AF1 (P=.0148) mutations were significantly enriched in MyD pts with ≥2 cytopenias. On univariate analysis, OS was significantly shorter in pts with MyD vs MyP PMF (median, 55 vs 103 months, respectively; P<.0001), and not different between MyD pts with one (median, 65 months) and ≥2 (median, 44 months) cytopenias (Fig. 1A). After competing risk analysis, the cumulative incidence of leukemic transformation (LT) was not different between MyD and MyP phenotypes (16% vs 11% at 5 years, respectively). Phenotypic differences between MyD and MyP patients were less evident in SMF, a part for older age of the former (P=.0207). The molecular background was likewise different: a MyD feature was enriched in mutations in TP53 (P=.0024), U2AF1 (P<.0001), and SETBP1 (P=.0125). TP53 mutations were remarkably more frequent in MyD SMF pts with ≥2 cytopenias (19%). Pts with MyD SMF had a significantly shorter OS compared to the MyP counterpart (median, 44 vs 105 months; P<.0001). Median OS was significantly inferior in MyD patients with ≥2 cytopenias compared to one cytopenia (median, 27 vs 58 months, respectively; P<.0001) (Fig. 1B). The cumulative incidence of LT was not different: 16% vs 7% at 5 years, respectively, for SMF pts with MyD and MyP phenotype. Conclusion: The current study provides a comprehensive analysis of the MyD phenotype in pts with PMF and SMF, partly recapitulating findings of previous studies (Marcellino BK et al. Clin Lymphoma Myeloma Leuk 2020). We showed that the MyD phenotype is associated with high-risk clinical and molecular features, particularly in PMF, and correlates with inferior OS. Of interest, U2AF1 mutations emerged as a distinct molecular marker of MyD in both PMF and SMF, while mutations in TP53 appear prevalent in MyD SMF. Figure 1 Figure 1. Disclosures Vannucchi: Incyte: Honoraria, Membership on an entity's Board of Directors or advisory committees; Novartis: Honoraria, Membership on an entity's Board of Directors or advisory committees; BMS: Honoraria, Membership on an entity's Board of Directors or advisory committees; AbbVie: Membership on an entity's Board of Directors or advisory committees.
Bone marrow dendritic cell aggregates associate with systemic immune dysregulation in chronic myelomonocytic leukemia
Mangaonkar, Abhishek A. , Reichard, Kaaren K. , Binder, Moritz , Coltro, Giacomo , Carr, Ryan M. , Chiu, April , Negron, Vivian , Timm, Michael, Hiebert, James W., Gangat, Naseema , Al‐Kali, Aref , Elliott, Michelle A. , Begna, Kebede H. , Wolanskyj, Alexandra P. , Litzow, Mark R. , Ansell, Stephen M. , Pardanani, Animesh , Tefferi, Ayalew , Patnaik, Mrinal M. , Timm, Michael M, Binder, Moritz , Wolanskyj-Spinner, Alexandra P , Carr, Ryan M , Lasho, Terra L. , Hefazi, Mehrdad , Anagnostou, Theodora , Villasboas, José C. , Gonsalves, Wilson I. , Shah, Meera , Alkhateeb, Hassan B. , Hogan, William J.

Blood Advances | November 5, 2020 | Volume: 4 | Issue: 21 | Pages: 5425-5430

10.1182/bloodadvances.2020002415 Get It

Key Points Systemic immune microenvironment signatures in CMML indicate an altered T- and natural killer cell balance. CMML bone marrow dendritic cell aggregates associate with disease progression and systemic regulatory T-cell phenotypic switch.
RAS/CBL mutations predict resistance to JAK inhibitors in myelofibrosis and are associated with poor prognostic features
Coltro, Giacomo , Rotunno, Giada, Mannelli, Lara, Mannarelli, Carmela, Fiaccabrino, Sara, Romagnoli, Simone , Bartalucci, Niccolò , Ravenda, Enrica, Gelli, Eleonora, Sant’Antonio, Emanuela , Patnaik, Mrinal M. , Tefferi, Ayalew , Romagnoli, Simone , Vannucchi, Alessandro M. , Guglielmelli, Paola

Blood Advances | August 10, 2020 | Volume: 4 | Issue: 15 | Pages: 3677-3687

10.1182/bloodadvances.2020002175 Get It

Abstract The dysregulation of the JAK/STAT pathway drives the pathogenesis of myelofibrosis (MF). Recently, several JAK inhibitors (JAKis) have been developed for treating MF. Select mutations (MTs) have been associated with impaired outcomes and are currently incorporated in molecularly annotated prognostic models. Mutations of RAS/MAPK pathway genes are frequently reported in cancer and at low frequencies in MF. In this study, we investigated the phenotypic, prognostic, and therapeutic implications of NRASMTs, KRASMTs, and CBLMTs (RAS/CBLMTs) in 464 consecutive MF patients. A total of 59 (12.7%) patients had RAS/CBLMTs: NRASMTs, n = 25 (5.4%); KRASMTs, n = 13 (2.8%); and CBLMTs, n = 26 (5.6%). Patients with RAS/CBLMTs were more likely to present with high-risk clinical and molecular features. RAS/CBLMTs were associated with inferior overall survival compared with patients without MTs and retained significance in a multivariate model, including the Mutation-Enhanced International Prognostic Score System (MIPSS70) risk factors and cytogenetics; however, inclusion of RAS/CBLMTs in molecularly annotated prognostic models did not improve the predictive power of the latter. The 5-year cumulative incidence of leukemic transformation was notably higher in the RAS/CBLMT cohort. Among 61 patients treated with JAKis and observed for a median time of 30 months, the rate of symptoms and spleen response at 6 months was significantly lower in the RAS/CBLMT cohort. Logistic regression analysis disclosed a significant inverse correlation between RAS/CBLMTs and the probability of achieving a symptom or spleen response that was retained in multivariate analysis. In summary, our study showed that RAS/CBLMTs are associated with adverse phenotypic features and survival outcomes and, more important, may predict reduced response to JAKis.
Response to erythropoiesis‐stimulating agents in patients with WHO‐defined myelodysplastic syndrome/myeloproliferative neoplasm with ring sideroblasts and thrombocytosis (MDS/MPN‐RS‐T)
Antelo, Guadalupe Belen, Mangaonkar, Abhishek A. , Coltro, Giacomo , Buradkar, Ajinkya , Finke, Christy M. , Binder, Moritz , Gangat, Naseema , Al‐Kali, Aref , Elliott, Michelle A. , King, Rebecca L. , Howard, Matthew T., Melody, Megan , Litzow, Mark R. , Tefferi, Ayalew , Fernández-Zapico, Martín E. , Komrokji, Rami S. , Patnaik, Mrinal M. , Antelo, Guadalupe, Lasho, Terra L. , Carr, Ryan, Binder, Moritz , Al-Kali, Aref , Howard, Matthew, Hogan, William, Tefferi, Ayalew , Komrokji, Rami S , Carr, Ryan M , Hogan, William J.

British Journal of Haematology | March 4, 2020 | Volume: 189 | Issue: 3 | Pages: No page available

10.1111/bjh.16515 Get It

Mutation‐enhanced international prognostic systems for essential thrombocythaemia and polycythaemia vera
Tefferi, Ayalew , Guglielmelli, Paola , Coltro, Giacomo , Finke, Christy M. , Loscocco, Giuseppe Gaetano , Sordi, Benedetta , Rotunno, Giada, Pacilli, Annalisa , Hanson, Curtis A. , Pardanani, Animesh , Gangat, Naseema , Lasho, Terra L. , Szuber, Natasha , Gangat, Naseema , Loscocco, Giuseppe Gaetano , Guglielmelli, Paola , Ketterling, Rhett P. , Vannucchi, Alessandro M.

British Journal of Haematology | January 16, 2020 | Volume: 189 | Issue: 2 | Pages: 291-302

10.1111/bjh.16380 Get It

Summary Survival prediction in essential thrombocythaemia (ET) and polycythaemia vera (PV) is currently based on clinically‐derived variables; we examined the possibility of integrating genetic information for predicting survival. To this end, 906 molecularly‐annotated patients (416 Mayo Clinic; 490 University of Florence, Italy), including 502 ET and 404 PV, were recruited. Multivariable analysis identified spliceosome mutations to adversely affect overall ( SF3B1 , SRSF2 in ET and SRSF2 in PV) and myelofibrosis‐free ( U2AF1 , SF3B1 in ET) survival; TP53 mutations predicted leukaemic transformation in ET; “adverse” mutations occurred in 51 (10%) ET and 8 (2%) PV patients. We confirmed the independent survival effect of adverse mutations [hazard ratio (HR) 2·4, 95% CI 1·6–3·5], age >60 years (6·6, 4·6–9·7), male sex (1·8, 1·3–2·4) and leukocytosis ≥11 × 10 9 /l (1·6, 1·1–2·2), in ET, and adverse mutations (7·8, 3·1–17·0), age >67 years (5·4, 3·6–8·1), leukocytosis ≥15 × 10 9 /l (2·8, 1·8–4·2) and thrombosis history (2·0, 1·4–2·9), in PV. HR‐based risk point allocation allowed development of three‐tiered mutation‐enhanced international prognostic systems (MIPSS) which were validated in both cohorts and performance was shown to be superior to conventional scoring systems. Spliceosome mutations enhance survival prediction in ET and PV and identify patients at risk for fibrotic progression. TP53 mutations predict leukaemic transformation in ET.
Phenotypic correlates and prognostic outcomes of TET2 mutations in myelodysplastic syndrome/myeloproliferative neoplasm overlap syndromes: A comprehensive study of 504 adult patients
Coltro, Giacomo , Antelo, Guadalupe Belen, Finke, Christy M. , Pardanani, Animesh , Gangat, Naseema , Carr, Ryan M. , Binder, Moritz , Mangaonkar, Abhishek A. , Fernández-Zapico, Martín E. , Tefferi, Ayalew , Patnaik, Mrinal M. , Antelo, Guadalupe, Lasho, Terra L. , Binder, Moritz , Mangaonkar, Abhishek A. , Tefferi, Ayalew , Patnaik, Mrinal , Carr, Ryan M , Ketterling, Rhett P. , Robertson, Keith D. , Bosi, Alberto , Vannucchi, Alessandro M.

American Journal of Hematology | January 11, 2020 | Volume: 95 | Issue: 4 | Pages: No page available

10.1002/ajh.25721 Get It

Peripheral Blood Cell Sorting Strategies for Transcriptomic Analysis in Chronic Myelomonocytic Leukemia
Mangaonkar, Abhishek A. , Almada, Luciana L. , Marks, David L. , Berger, Kurt, Gangat, Naseema , Fernández-Zapico, Martín E. , Patnaik, Mrinal M. , Binder, Moritz , Carr, Ryan M , Droin, Nathalie , Coltro, Giacomo , Lasho, Terra L. , Pin, Christopher L. , Solary, Éric

Blood | November 14, 2019 | Volume: 134 | Issue: Supplement_1 | Pages: 4232-4232

10.1182/blood-2019-122187 Get It

Introduction: Chronic myelomonocytic leukemia (CMML) is a clonal hematopoietic neoplasm characterized by sustained peripheral blood (PB) monocytosis and an inherent risk for leukemic transformation. Clonal origins of the disease can be detected in hematopoietic progenitor cells (CD34+/CD38-), while the complete spectrum of mutational evolution can be seen in circulating monocytes (CD14+). Cell sorting strategies have been employed to select cells in CMML, and while there are adequate monocyte numbers in the PB, there are very few circulating progenitor cells. In addition, attrition related to the selection process significantly depletes primary cells available for biological experiments and multiomics studies such as RNA-seq, ChIP-seq, ATAC-seq, and DIP-seq. While single-cell methods may be able to overcome this challenge, bulk sequencing methods remain a robust and cost-effective approach. We hypothesized that, secondary to the stem cell origin of this disease and significant myeloproliferation, PB mononuclear cells (MNC) would provide comparable results with regards to transcriptomic analysis, in comparison to cell selection procedures. Methods: Peripheral blood obtained from 15 molecularly annotated patients with WHO-defined CMML was ACK-lysed and subjected to a Ficoll procedure for collection of MNC. MNC were left unsorted (n=5) or further selected for CD34+/CD38- (n=5) and CD14+ (n=5) using a fully automated RoboSep-S (StemCell Technologies) protocol. All samples were then subjected to bulk whole transcriptome shotgun sequencing (using Illumina TruSeq and an Illumina HiSeq 4000). After data quality control, counts of detectable transcripts were log2-normalized and Pearson's product-moment correlation coefficients were calculated to evaluate the correlation between the two cell-sorting strategies and unsorted cells in terms of detectable transcripts. To visualize sample differences log2-normalized transcripts counts were centered and scaled per gene for a select number of genes relevant to myeloid biology as well as a number of housekeeping genes. Results: Fifteen patients with WHO-defined CMML, median age 69 years (55-73 years), 66% male, were included. Next generation sequencing for somatic mutations was performed on PB MNC obtained at CMML diagnosis (Figure 1, top heatmap). Considering the small sample size, mutations were evenly distributed among groups with the exception of ASXL1 (higher frequency in CD14+ and CD34+/CD38- cells), ZRSR2 (higher frequency in unsorted cells), and TET2 (lower frequency in CD14+ cells). The three groups were also well matched with regards to other CMML-related variables such as WHO and FAB morphological subtypes, cytogenetic abnormalities, and risk stratification by the Mayo Molecular Model. Transcriptomic analysis revealed a strong positive correlation between the median number of log2-normalized detectable transcripts in unsorted cells and CD34+/CD38- cells (ρ = 0.96, p < 0.001, top scatterplot). Likewise, there was a strong positive correlation between the median number of log2-normalized detectable transcripts in unsorted cells and CD14+ cells (ρ = 0.91, p < 0.001, bottom scatterplot). The latter correlation was marginally lower, which was explained by increased global gene expression in 3 of the 5 CD14+ samples (bottom heatmap). Increased gene expression in these 3 samples involved key myeloid genes and housekeeping genes known to have stable expression across human tissues alike. In comparison to PB MNC, both cell sorting strategies resulted in significant depletion of primary cells required for other experiments, and for procedures such as ChIP-seq, DIP-seq and ATAC-seq (CD34+/CD38- had greater depletion than CD14+). Additional experiments to assess this strategy for the above mentioned epigenetic studies are currently being planned. Conclusions: Accounting for sample differences, different cell sorting strategies (unsorted, CD34+/CD38- selection, and CD14+ selection) yielded similar results when performing bulk transcriptomic assessments on PB MNC from patients with CMML. For the purpose of gene expression profiling there was no clear advantage with CD34+/CD38- or CD14+ selection. These results support the use of unsorted cells for bulk transcriptomic analysis in CMML. Figure 1 Disclosures Patnaik: Stem Line Pharmaceuticals.: Membership on an entity's Board of Directors or advisory committees.
Response to Erythropoiesis Stimulating Agents in Patients with WHO-Defined Myelodysplastic Syndrome/Myeloproliferative Neoplasm with Ring Sideroblasts and Thrombocytosis (MDS/MPN-RS-T)
Antelo, Guadalupe Belen, Mangaonkar, Abhishek A. , Finke, Christy M. , Gangat, Naseema , Al‐Kali, Aref , Elliott, Michelle A. , Howard, Matthew T., King, Rebecca L. , Litzow, Mark, Pardanani, Animesh , Tefferi, Ayalew , Fernández-Zapico, Martín E. , Patnaik, Mrinal M. , Coltro, Giacomo , Lasho, Terra L. , Carr, Ryan M , Binder, Moritz , Hogan, William J.

Blood | November 14, 2019 | Volume: 134 | Issue: Supplement_1 | Pages: 4182-4182

10.1182/blood-2019-126199 Get It

Background: Myelodysplastic syndrome (MDS)/myeloproliferative neoplasm (MPN) with ring sideroblasts and thrombocytosis (MDS/MPN-RS-T) was formally included as a unique WHO-defined entity in the 2016, iteration of the classification of hematological neoplasms (under MDS/MPN overlap syndromes). Patients with MDS/MPN-RS-T have features of MDS-RS-single lineage dysplasia (SLD), persistent thrombocytosis (platelet count ≥450x109/L), with proliferation of large atypical megakaryocytes. Anemia, including red blood cell transfusion dependency (RBC-TD) is a major problem. While extensive studies have documented erythroid response rates (ERR) to erythropoiesis stimulating agents (ESA) in MDS and MDS-RS-SLD, the data in MDS/MPN-RS-T is less clear. We carried out this study to asses ERR in ESA treated patients with MDS/MPN-RS-T. Methods: After approval by the IRB, patients with 2016, WHO-defined MDS/MPN-RS-T were included in the study. The bone marrow (BM) morphology, cytogenetics and BM RS% were retrospectively reviewed. All study patients underwent next generation sequencing for 29 myeloid-relevant genes, obtained on BM mononuclear cells, at diagnosis, or at first referral, by previously described methods (Patnaik et al., BCJ 2016). Treatment details, including the type of ESA used, dose administered, side effects and reason for discontinuation were retrospectively abstracted. Erythroid responses were assessed using the 2006, international working group (IWG) MDS and the 2015, IWG MDS/MPN response criteria. Results: Forty seven patients with MDS/MPN-RS-T were identified, of which 37 (79%) patients received ESA treatment at any time point during their disease course; median age 73 years (range, 52-93), 46% male.The hemoglobin at diagnosis (HB) and baseline erythropoietin (EPO) levels were 9.1 gm/dL (range, 6.6-12.1) and 39 IU/L (range, 8-500), respectively. Ten (29%) patients were RBC-TD at baseline. None of the 37, ESA-treated patients were on concomitant cyto-reductive therapy for thrombocytosis. Twenty (54%) patients were treated with erythropoietin-a, 13 (35%) with darbepoetin, and 4 (11%) with both sequentially. Median doses were 40,000 IU weekly (range, 20,000-80,000) for erythropoietin-a and 200 mcg every 2 weeks (range, 100-500), for darbepoetin. Median treatment duration was 14 months (range, 1-173) and causes for discontinuation included; ESA failure/loss of response in 20 (54%), sustained HB rise in 1 (3%) and other causes, including adverse events in 4 (11%) patients. With regards to safety, the following events were considered potentially ESA related; treatment emergent hypertension in 2 (5%), venous thromboembolism, ischemic stroke and splenic infarction in 1 (3%) patient each, respectively. All patients with thrombotic/ischemic events had been on low dose aspirin prophylaxis. Erythroid responses by the IWG MDS and MDS/MPN response criteria were assessable in 35 (95%) patients: with 16 (46%) meeting criteria for an erythroid response, by both assessment systems. The median duration of ER was 20 months (range, 2-172). In comparison to ESA non-responders, those that responded were more likely to have baseline EPO levels ≤44 IU/L (ROC analysis; median, 28 vs 112 IU/L; p=0.0080), while there was a trend for inferior responses associated with RBC-TD (p=0.0857). Age, gender, baseline white blood cell and platelet counts, type of ESA used, BM RS %, JAK2V617F, SF3B1, DNMT3A, TET2 and ASXL1 mutational status did not impact ESA response (Table 1). On a univariate survival analysis (OS), survival was not significantly different between ESA responders vs non-responder (median OS, 76 vs 45 months; p=0.2929). After ESA failure, 7 (19%) patients received hypomethylating agents (HMA), while 5 (14%) received lenalidomide. There were no erythroid responses to HMA, while 1 of 3 (33%) assessable lenalidomide treated patients achieved a morphological complete response. Conclusion: Erythropoiesis stimulating agents are effective first line therapies for the management of anemia in patients with MDS/MPN-RS-T, with 46% achieving an erythroid response (median duration of response of 20 months). Low baseline endogenous EPO level (<44 IU/L) was the best predictor of response, with a trend towards an inferior response in the presence of RBC-TD. In the context of clonal thrombocytosis, potentially related thrombotic/ischemic events were documented in 8% of patients. Disclosures Al-Kali: Astex Pharmaceuticals, Inc.: Research Funding. Patnaik:Stem Line Pharmaceuticals.: Membership on an entity's Board of Directors or advisory committees.