Yuan, Yinyin

e12568 Background: Modern preventive screening have made it possible to identify ductal carcinoma in situ (DCIS). Progression of DCIS to invasive disease is known to be driven by somatic evolution and affected by clinical interventions. Yet studies indicate that only 20–30% of the cases of DCIS will progress further if not treated, implying that a large portion of patients are over treated. Recognizing which pre-cancerous tumors are likely to progress to cancer or recur as DCIS after initial treatment is of great importance to optimize treatment options, lower associated risks and allocate healthcare efforts to patients that most benefit from early treatment. Methods: This study consists of a retrospective cohort of 158 patients, 57 of which had a DCIS recurrence over 2 to 228 months after treatment, and 45 progressed to invasive disease over 12 to 180 months. We generated a digital pathology library consisting of hematoxylin and eosin (H&E) stained whole slide images (WSI), and applied machine learning methods to perform duct and nuclear segmentation followed by cell classification. We then computed a set of spatial statistics from landscape ecology to characterize each sample. We used LASSO on half of the data (the training set) to select a Cox proportional hazards model that predicted recurrence of DCIS or cancer and used the other half of the data (the test set) to validate the predictors in the Cox model. Results: When considering the time to recurrence as disease-free survival (DFS), the type of DCIS treatment stratifies patients between Lumpectomy Only and More than Lumpectomy groups (log-rank test p-value < 0.0001), recapitulating previous results. When the subset of patients that had more than a lumpectomy was analyzed using spatial landscape ecology metrics, a decrease in the interaction between tumor cells and fibroblasts and between tumor cells and lymphocytes, measured by the mean nearest neighbor distance, were associated with improved DFS (concordance = 0.717) in the model validation set. Stratification of samples by the median risk is discriminatory with a p-value < 0.001. Alternatively, decreased nearest neighbor distance between lymphocytes and fibroblasts was associated with the time to invasive disease (p-value < 0.05). Conclusions: Integrating spatial ecological statistics of cell distributions enhances risk stratification of DCIS samples beyond the known effects of early treatment. Our results highlight the importance of ecological mechanisms in recurrence, progression and treatment resistance. The risk associated with spatial interactions of lymphocytes and fibroblasts suggests previously unknown ecological interactions may be associated with early micro-metastases that result in breast cancer even after mastectomy or lumpectomy with radiation in patients with DCIS.

Abstract Effective immune synapses are a prerequisite for desirable immune surveillance and control of tumour growth. Cell-to-cell interactions form the basis of immune synapses, resulting in either immunoprotected or immunosuppressed manifestations in the tumour brain that could explain glioblastoma (GBM) recurrence. Using state-of-the-art multiplex imaging, spatial statistics, and spatially aware deep learning tools in 14 patient-matching tissues from primary and recurrent GBM, we detected spatial immune networks (SINets). SINets across 105 regions of interest comprising 2.3 million cells show stronger spatial engagement between myeloid and lymphoid lineages at recurrence. SINets’ architecture in primary tumours is associated with relapse timing. Patients, where the SINets are more modular, recur sooner than patients with denser SiNets. In addition, this association presents sexual dimorphism in our cohort (N=3 females, and N=4 males). Phenotype-to-phenotype spatial coexistence also contributes to enhancing phenotype prediction. A spatial-aware deep learning model trained with single-cell data from primary tumours reaches an average balanced accuracy of 0.76 in primary tumour cellular communities unseen during training, compared to a spatial-agnostic model that reached an average balanced accuracy of 0.69. In summary, we detected a distinct spatial engagement in glioblastoma undergoing chemo-radiation treatment. The spatial patterns of coexistence represent ecological niches that contribute to defining cell occurrence and may underpin effective immune synapses. Overall, the spatiotemporal elements provide a newer approach for dissecting glioblastoma’s complexity and discovering opportunities for stratifying patients by harnessing spatial information encoded in multicellular niches.

Abstract Recent advances in the field of immuno‐oncology have brought transformative changes in the management of cancer patients. The immune profile of tumours has been found to have key value in predicting disease prognosis and treatment response in various cancers. Multiplex immunohistochemistry and immunofluorescence have emerged as potent tools for the simultaneous detection of multiple protein biomarkers in a single tissue section, thereby expanding opportunities for molecular and immune profiling while preserving tissue samples. By establishing the phenotype of individual tumour cells when distributed within a mixed cell population, the identification of clinically relevant biomarkers with high‐throughput multiplex immunophenotyping of tumour samples has great potential to guide appropriate treatment choices. Moreover, the emergence of novel multi‐marker imaging approaches can now provide unprecedented insights into the tumour microenvironment, including the potential interplay between various cell types. However, there are significant challenges to widespread integration of these technologies in daily research and clinical practice. This review addresses the challenges and potential solutions within a structured framework of action from a regulatory and clinical trial perspective. New developments within the field of immunophenotyping using multiplexed tissue imaging platforms and associated digital pathology are also described, with a specific focus on translational implications across different subtypes of cancer. © 2024 The Authors. The Journal of Pathology published by John Wiley & Sons Ltd on behalf of The Pathological Society of Great Britain and Ireland.

Abstract Modern histologic imaging platforms coupled with machine learning methods have provided new opportunities to map the spatial distribution of immune cells in the tumor microenvironment. However, there exists no standardized method for describing or analyzing spatial immune cell data, and most reported spatial analyses are rudimentary. In this review, we provide an overview of two approaches for reporting and analyzing spatial data (raster versus vector‐based). We then provide a compendium of spatial immune cell metrics that have been reported in the literature, summarizing prognostic associations in the context of a variety of cancers. We conclude by discussing two well‐described clinical biomarkers, the breast cancer stromal tumor infiltrating lymphocytes score and the colon cancer Immunoscore, and describe investigative opportunities to improve clinical utility of these spatial biomarkers. © 2023 The Pathological Society of Great Britain and Ireland.

AbstractThe clinical significance of the tumor‐immune interaction in breast cancer is now established, and tumor‐infiltrating lymphocytes (TILs) have emerged as predictive and prognostic biomarkers for patients with triple‐negative (estrogen receptor, progesterone receptor, and HER2‐negative) breast cancer and HER2‐positive breast cancer. How computational assessments of TILs might complement manual TIL assessment in trial and daily practices is currently debated. Recent efforts to use machine learning (ML) to automatically evaluate TILs have shown promising results. We review state‐of‐the‐art approaches and identify pitfalls and challenges of automated TIL evaluation by studying the root cause of ML discordances in comparison to manual TIL quantification. We categorize our findings into four main topics: (1) technical slide issues, (2) ML and image analysis aspects, (3) data challenges, and (4) validation issues. The main reason for discordant assessments is the inclusion of false‐positive areas or cells identified by performance on certain tissue patterns or design choices in the computational implementation. To aid the adoption of ML for TIL assessment, we provide an in‐depth discussion of ML and image analysis, including validation issues that need to be considered before reliable computational reporting of TILs can be incorporated into the trial and routine clinical management of patients with triple‐negative breast cancer. © 2023 The Authors. The Journal of Pathology published by John Wiley & Sons Ltd on behalf of The Pathological Society of Great Britain and Ireland.