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Helgeson, Scott A

0000-0001-7590-2293

Mayo Clinic

Digital Engineering & Artificial Intelligence Laboratory (DEAL), Mayo Clinic, Jacksonville, FL 32224, USA.

Citations 29

Artificial Intelligence-Enhanced Liquid Biopsy and Radiomics in Early-Stage Lung Cancer Detection: A Precision Oncology Paradigm
Cherukuri, Swathi Priya , Kaur, Anmolpreet , Goyal, Bipasha, Kukunoor, Hanisha Reddy , Sahito, Areesh Fatima, Sachdeva, Pratyush , Yerrapragada, Gayathri, Poonguzhali, E. , Shariff, Mohammed Naveed , Natarajan, T.K. , Janarthanan, Jayarajasekaran, Richard, Samuel, Venkatesaprasath, Shakthidevi Pallikaranai, Karuppiah, Shiva Sankari, Iyer, Vivek , Helgeson, Scott A. , Arunachalam, Shivaram P. , Kaur, Anmolpreet , Natarajan, Thangeswaran , Pallikaranai Venkatesaprasath, Shakthidevi, Iyer, Vivek N , Arunachalam, S P , Helgeson, Scott A , Shariff, Mohammad Naveed , Sahito, Areesh Fatima , Natarajan, Thangeswaran

Cancers | September 29, 2025 | Volume: 17 | Issue: 19 | Pages: 3165

10.3390/cancers17193165 Get It

Background: Lung cancer remains the leading cause of cancer-related mortality globally, largely due to delayed diagnosis in its early stages. While conventional diagnostic tools like low-dose CT and tissue biopsy are routinely used, they suffer from limitations including invasiveness, radiation exposure, cost, and limited sensitivity for early-stage detection. Liquid biopsy, a minimally invasive alternative that captures circulating tumor-derived biomarkers such as ctDNA, cfRNA, and exosomes from body fluids, offers promising diagnostic potential—yet its sensitivity in early disease remains suboptimal. Recent advances in Artificial Intelligence (AI) and radiomics are poised to bridge this gap. Objective: This review aims to explore how AI, in combination with radiomics, enhances the diagnostic capabilities of liquid biopsy for early detection of lung cancer and facilitates personalized monitoring strategies. Content Overview: We begin by outlining the molecular heterogeneity of lung cancer, emphasizing the need for earlier, more accurate detection strategies. The discussion then transitions into liquid biopsy and its key analytes, followed by an in-depth overview of AI techniques—including machine learning (e.g., SVMs, Random Forest) and deep learning models (e.g., CNNs, RNNs, GANs)—that enable robust pattern recognition across multi-omics datasets. The role of radiomics, which quantitatively extracts spatial and morphological features from imaging modalities such as CT and PET, is explored in conjunction with AI to provide an integrative, multimodal approach. This convergence supports the broader vision of precision medicine by integrating omics data, imaging, and electronic health records. Discussion: The synergy between AI, liquid biopsy, and radiomics signifies a shift from traditional diagnostics toward dynamic, patient-specific decision-making. Radiomics contributes spatial information, while AI improves pattern detection and predictive modeling. Despite these advancements, challenges remain—including data standardization, limited annotated datasets, the interpretability of deep learning models, and ethical considerations. A push toward rigorous validation and multimodal AI frameworks is necessary to facilitate clinical adoption. Conclusion: The integration of AI with liquid biopsy and radiomics holds transformative potential for early lung cancer detection. This non-invasive, scalable, and individualized diagnostic paradigm could significantly reduce lung cancer mortality through timely and targeted interventions. As technology and regulatory pathways mature, collaborative research is crucial to standardize methodologies and translate this innovation into routine clinical practice.
Correlation of Automated Adaptive Thresholding for Inspiratory Mosaic and Expiratory Air Trapping on Chest CT With Pulmonary Function Tests
Helgeson, Scott A. , Demirer, Mutlu , Gupta, Vikash , Erdal, Barbaros S. , Sonavane, Sushilkumar K. , Helgeson, Scott A , Little, Brent P. , White, Richard D.

Journal of Computer Assisted Tomography | September 16, 2025 | Volume: 50 | Issue: 2 | Pages: 286-293

10.1097/rct.0000000000001798 Get It

Objective: Pulmonary air trapping is critical for diagnosing and prognostication of various lung diseases. Expiratory CT imaging serves as an accessible method to assess air trapping, which correlates with small airway disease outcomes. Air trapping manifests as mosaic attenuation on inspiratory chest CT that is difficult for visual estimation. The primary aim of this study was to develop an automated tool to quantify mosaic attenuation on inspiratory CT and air trapping on paired expiratory CT. Secondary aims included comparing CT-derived parameters with PFT measurements and dyspnea scores. Methods: This retrospective analysis of noncontrast chest CTs from 2 academic hospitals was conducted between January 1, 2018, and December 31, 2019. Patients with paired inspiratory and expiratory CT chest scans and PFTs performed on the same day were included. A chest radiologist manually annotated lung parenchyma in a reference cohort. Several histogram-based metrics were computed from lung parenchymal CT values, with the maximum peak position showing the strongest correlation with manually determined thresholds. This threshold, derived from the histogram peak, was applied in the adaptive thresholding process to quantify mosaic attenuation and air trapping. Results: We analyzed 267 patients (65.5% female, median age 68). Most exhibited normal physiological patterns (44.0%). Patients with elevated residual volume (RV) by PFTs (28.1%) had significantly higher inspiratory CT mosaic attenuation (1629.6 vs. 1311.5 mL, P <0.01) and expiratory CT air trapping volumes (1413.7 vs. 886.2 mL, P <0.01). Correlation analyses demonstrated strong relationships between CT-derived mosaic attenuation and air trapping measures and RV. The correlation with PFT parameters was even stronger in subgroup analyses in patients with obstructive PFT patterns. These models had good predictive ability for an abnormal RV (AUC of 0.92, sensitivity of 72.4%, and specificity of 92.0%) and clinical utility based on good correlation with the mMRC dyspnea score ( r =0.71; 95% CI: 0.65-0.77). Conclusions: This automated adaptive thresholding on inspiratory and expiratory chest CT scans showed a high correlation of lung volume and air trapping parameters with PFTs, revealing that measures of lung function have a complex interplay with air trapping.
A Novel You Only Listen Once (YOLO) Deep Learning Model for Automatic Prominent Bowel Sounds Detection: Feasibility Study in Healthy Subjects
Kalahasty, Rohan, Yerrapragada, Gayathri, Lee, Jieun , Gopalakrishnan, Keerthy, Kaur, Avneet , Muddaloor, Pratyusha, Sood, Divyanshi, Parikh, Charmy, Gohri, Jay , Panjwani, Gianeshwaree Alias Rachna , Asadimanesh, Naghmeh, Ansari, Rabiah Aslam, Rapolu, Swetha, Karuppiah, Shiva Sankari, Dasari, Vijaya M., Helgeson, Scott A. , Arunachalam, Shivaram P. , Helgeson, Scott A , Arunachalam, S P , Panjwani, Gianeshwaree Alias Rachna , Yerrapragada, Gayathri, Ansari, Rabiah Aslam, Elangovan, Poonguzhali , Akshintala, Venkata S.

Sensors | August 4, 2025 | Volume: 25 | Issue: 15 | Pages: 4735

10.3390/s25154735 Get It

Accurate diagnosis of gastrointestinal (GI) diseases typically requires invasive procedures or imaging studies that pose the risk of various post-procedural complications or involve radiation exposure. Bowel sounds (BSs), though typically described during a GI-focused physical exam, are highly inaccurate and variable, with low clinical value in diagnosis. Interpretation of the acoustic characteristics of BSs, i.e., using a phonoenterogram (PEG), may aid in diagnosing various GI conditions non-invasively. Use of artificial intelligence (AI) and improvements in computational analysis can enhance the use of PEGs in different GI diseases and lead to a non-invasive, cost-effective diagnostic modality that has not been explored before. The purpose of this work was to develop an automated AI model, You Only Listen Once (YOLO), to detect prominent bowel sounds that can enable real-time analysis for future GI disease detection and diagnosis. A total of 110 2-minute PEGs sampled at 44.1 kHz were recorded using the Eko DUO® stethoscope from eight healthy volunteers at two locations, namely, left upper quadrant (LUQ) and right lower quadrant (RLQ) after IRB approval. The datasets were annotated by trained physicians, categorizing BSs as prominent or obscure using version 1.7 of Label Studio Software®. Each BS recording was split up into 375 ms segments with 200 ms overlap for real-time BS detection. Each segment was binned based on whether it contained a prominent BS, resulting in a dataset of 36,149 non-prominent segments and 6435 prominent segments. Our dataset was divided into training, validation, and test sets (60/20/20% split). A 1D-CNN augmented transformer was trained to classify these segments via the input of Mel-frequency cepstral coefficients. The developed AI model achieved area under the receiver operating curve (ROC) of 0.92, accuracy of 86.6%, precision of 86.85%, and recall of 86.08%. This shows that the 1D-CNN augmented transformer with Mel-frequency cepstral coefficients achieved creditable performance metrics, signifying the YOLO model’s capability to classify prominent bowel sounds that can be further analyzed for various GI diseases. This proof-of-concept study in healthy volunteers demonstrates that automated BS detection can pave the way for developing more intuitive and efficient AI-PEG devices that can be trained and utilized to diagnose various GI conditions. To ensure the robustness and generalizability of these findings, further investigations encompassing a broader cohort, inclusive of both healthy and disease states are needed.
Diagnosis and Management of Community-acquired Pneumonia. An Official American Thoracic Society Clinical Practice Guideline
Jones, Barbara , Soni, Nilam J. , Sullivan, Liam R, Musher, Daniel M., Erstad, Brian L. , Pickens, Chiagozie I. , Metlay, Joshua P. , Cao, Bin , Gendlina, Inessa , Hojat, Leila S , Laguio‐Vila, Maryrose , Liang, Stephen Y., Waterer, Grant , Paine, Marilynn, Wilson, Kevin R. , Jones, Barbara E , Ramirez, Julio A , Oren, Eyal , Soni, Nilam J , Sullivan, Liam R , Restrepo, Marcos I , Musher, Daniel M , Erstad, Brian L , Pickens, Chiagozie , Vaughn, Valerie M , Helgeson, Scott A , Crothers, Kristina , Metlay, Joshua P , Bissell Turpin, Brittany D , Cao, Bin , Chalmers, James D , Dela Cruz, Charles S , Hojat, Leila S , Laguio-Vila, Maryrose , Liang, Stephen Y , Waterer, Grant W , Wilson, Kevin , Ramírez, Julio A. , Oren, Eyal , Sullivan, Liam R, Vaughn, Valerie M. , Helgeson, Scott A. , Crothers, Kristina , Bissell, Brittany D. , Chalmers, James D. , Liang, Stephen Y. , Hawkins, Conall

American Journal of Respiratory and Critical Care Medicine | July 18, 2025 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.1164/rccm.202507-1692st Get It

Abstract Background: Understanding of the diagnosis and treatment of adults with community-acquired pneumonia (CAP) has evolved thanks to new evidence, experience, and emerging technologies. This document updates evidence-based clinical practice guidelines on four key questions for the diagnosis and management of adult patients with CAP. Methods: A multidisciplinary panel integrated systematic reviews of comparative evidence with other relevant research and clinical experience, then applied Grading of Recommendations, Assessment, Development and Evaluation (GRADE) methodology to produce recommendations using the Evidence to Decision Framework. Results: The panel formulated clinical recommendations that address questions related to CAP, including lung ultrasound for diagnosis, empiric antibacterial therapy if a test for a respiratory virus is positive, antibiotic duration, and the use of systemic corticosteroids. Conclusions: The panel formulated and provided the rationale for recommendations on selected diagnostic and treatment strategies for adult patients with CAP.
A Novel 3D Convolutional Neural Network-Based Deep Learning Model for Spatiotemporal Feature Mapping for Video Analysis: Feasibility Study for Gastrointestinal Endoscopic Video Classification
Dhar, Mrinal Kanti , Deb, Mou, Gopalakrishnan, Keerthy, Sood, Divyanshi, Kaur, Avneet , Parikh, Charmy, Rapolu, Swetha, Panjwani, Gianeshwaree Alias Rachna , Ansari, Rabiah Aslam, Asadimanesh, Naghmeh, Karuppiah, Shiva Sankari, Helgeson, Scott A. , Arunachalam, Shivaram P. , Panjwani, Gianeshwaree Alias Rachna , Helgeson, Scott A , Arunachalam, S P , Elangovan, Poonguzhali , Ansari, Rabiah Aslam, Akshintala, Venkata S.

Journal of Imaging | July 18, 2025 | Volume: 11 | Issue: 7 | Pages: 243

10.3390/jimaging11070243 Get It

Accurate analysis of medical videos remains a major challenge in deep learning (DL) due to the need for effective spatiotemporal feature mapping that captures both spatial detail and temporal dynamics. Despite advances in DL, most existing models in medical AI focus on static images, overlooking critical temporal cues present in video data. To bridge this gap, a novel DL-based framework is proposed for spatiotemporal feature extraction from medical video sequences. As a feasibility use case, this study focuses on gastrointestinal (GI) endoscopic video classification. A 3D convolutional neural network (CNN) is developed to classify upper and lower GI endoscopic videos using the hyperKvasir dataset, which contains 314 lower and 60 upper GI videos. To address data imbalance, 60 matched pairs of videos are randomly selected across 20 experimental runs. Videos are resized to 224 × 224, and the 3D CNN captures spatiotemporal information. A 3D version of the parallel spatial and channel squeeze-and-excitation (P-scSE) is implemented, and a new block called the residual with parallel attention (RPA) block is proposed by combining P-scSE3D with a residual block. To reduce computational complexity, a (2 + 1)D convolution is used in place of full 3D convolution. The model achieves an average accuracy of 0.933, precision of 0.932, recall of 0.944, F1-score of 0.935, and AUC of 0.933. It is also observed that the integration of P-scSE3D increased the F1-score by 7%. This preliminary work opens avenues for exploring various GI endoscopic video-based prospective studies.
The Human Voice as a Digital Health Solution Leveraging Artificial Intelligence
Muddaloor, Pratyusha, Baraskar, Bhavana , Shah, Hriday , Gopalakrishnan, Keerthy, Sood, Divyanshi, Pasupuleti, Prem C., Singh, Akshay , Mitra, Dipankar , Hoskote, Sumedh S. , Iyer, Vivek , Helgeson, Scott A. , Arunachalam, Shivaram P. , Iyer, Vivek N , Arunachalam, S P , Helgeson, Scott A

Sensors | May 29, 2025 | Volume: 25 | Issue: 11 | Pages: 3424

10.3390/s25113424 Get It

The human voice is an important medium of communication and expression of feelings or thoughts. Disruption in the regulatory systems of the human voice can be analyzed and used as a diagnostic tool, labeling voice as a potential “biomarker”. Conversational artificial intelligence is at the core of voice-powered technologies, enabling intelligent interactions between machines. Due to its richness and availability, voice can be leveraged for predictive analytics and enhanced healthcare insights. Utilizing this idea, we reviewed artificial intelligence (AI) models that have executed vocal analysis and their outcomes. Recordings undergo extraction of useful vocal features to be analyzed by neural networks and machine learning models. Studies reveal machine learning models to be superior to spectral analysis in dynamically combining the huge amount of data of vocal features. Clinical applications of a vocal biomarker exist in neurological diseases such as Parkinson’s, Alzheimer’s, psychological disorders, DM, CHF, CAD, aspiration, GERD, and pulmonary diseases, including COVID-19. The primary ethical challenge when incorporating voice as a diagnostic tool is that of privacy and security. To eliminate this, encryption methods exist to convert patient-identifiable vocal data into a more secure, private nature. Advancements in AI have expanded the capabilities and future potential of voice as a digital health solution.
Obstructive Lung Disease Classification from Electrocardiograms Using Machine Learning
Soumana, Aboubacar Abdoulaye , Lamichhane, Prajwol , Shabbir, Mehlam , Liu, Xudong , Nasseri, Mona , Helgeson, Scott A. , Helgeson, Scott A

Proceedings of the 2025 ACM Southeast Conference | May 8, 2025 | Volume: No volume available | Issue: No issue available | Pages: 221-226

10.1145/3696673.3723076 Get It

A Systematic Review and Meta-Analysis of Prophylactic Vasopressors for the Prevention of Peri-Intubation Hypotension
Saunders, Hollie , Khadka, Subekshya, Shrestha, Rabi , Baig, Hassan , Helgeson, Scott A. , Baig, Hassan Z , Helgeson, Scott A , Shrestha, Rabi

Diseases | December 31, 2024 | Volume: 13 | Issue: 1 | Pages: 5

10.3390/diseases13010005 Get It

Background/Objectives: Peri-intubation hypotension is a known complication of endotracheal intubation. In the hospital setting, peri-intubation hypotension has been shown to increase hospital mortality and length of stay. The use of prophylactic vasopressors at the time of sedation induction to prevent peri-intubation hypotension has been raised. This systematic review and meta-analysis aims to review the safety and efficacy of this practice. Methods: The study was fully registered with PROSPERO on 13 October 2022, and screening for eligibility was initiated on 20 September 2024. Randomized controlled trials, along with retrospective or prospective cohort studies, were included in the search. The terms “peri-intubation hypotension”, “vasopressors”, “intubation”, and “anesthesia induced hypotension” were used to search the title/summary in PubMed, Cochrane Library, and Google Scholar databases. An assessment of bias for each study was conducted using the Newcastle-Ottawa Quality Assessment Scale. The primary outcome was the rate of hypotension peri-intubation. Any complications secondary to hypotension or vasopressors were the secondary outcome. Results: We identified 13 studies, which were all randomized controlled studies, to include in the final analysis. The risk ratio for preventing peri-intubation hypotension was 1.6 (95% CI, 1.2–2.14) with the use of prophylactic phenylephrine while giving propofol versus no prophylactic vasopressors and 1.28 (95% CI 1.03–1.60) with the use of ephedrine. Conclusions: These findings suggest that in patients undergoing intubation in the operating room with propofol, prophylactic vasopressors given with induction for intubation decrease the odds of hypotension.
The Association between Non-Invasive Ventilation and the Rate of Ventilator-Associated Pneumonia
Saunders, Hollie , Khadka, Subekshya, Shrestha, Rabi , Balavenkataraman, Arvind , Hochwald, Alexander , Ball, Colleen T. , Helgeson, Scott A. , Helgeson, Scott A , Shrestha, Rabi

Diseases | October 27, 2023 | Volume: 11 | Issue: 4 | Pages: 151

10.3390/diseases11040151 Get It

Ventilator-associated pneumonia (VAP) has significant effects on patient outcomes, including prolonging the duration of both mechanical ventilation and stay in the intensive care unit (ICU). The aim of this study was to assess the association between non-invasive ventilation/oxygenation (NIVO) prior to intubation and the rate of subsequent VAP. This was a multicenter retrospective cohort study of adult patients who were admitted to the medical ICU from three tertiary care academic centers in three distinct regions. NIVO was defined as continuous positive airway pressure (CPAP), bilevel positive airway pressure (BiPAP), or high-flow nasal cannula (HFNC) for any duration during the hospitalization prior to intubation. The primary outcome variable was VAP association with NIVO. A total of 17,302 patients were included. VAP developed in 2.6% of the patients (444/17,302), 2.3% (285/12,518) of patients among those who did not have NIVO, 1.6% (30/1879) of patients who had CPAP, 2.5% (17/690) of patients who had HFNC, 8.1% (16/197) of patients who had BiPAP, and 4.8% (96/2018) of patients who had a combination of NIVO types. Compared to those who did not have NIVO, VAP was more likely to develop among those who had BiPAP (adj OR 3.11, 95% CI 1.80–5.37, p < 0.001) or a combination of NIVO types (adj OR 1.91, 95% CI 1.49–2.44, p < 0.001) after adjusting for patient demographics and comorbidities. The use of BiPAP or a combination of NIVO types significantly increases the odds of developing VAP once receiving IMV.
Does COVID-19 impair V̇o2peak in patients with cardiorespiratory disease? Insight from cardiopulmonary responses to maximal exercise pre- and post-illness
Fernandes, Igor A. , Balavenkataraman, Arvind , BONVIE-HILL, NATALIE , Patel, Neal M. , Helgeson, Scott A. , Bonvie-Hill, Natalie E, Helgeson, Scott A , Taylor, Bryan J.

Journal of Applied Physiology | October 19, 2023 | Volume: 135 | Issue: 5 | Pages: 1146-1156

10.1152/japplphysiol.00357.2023 Get It

There is accumulating evidence that reduced exercise capacity is, or can be, an outcome following COVID-19. However, evidence to date relies upon cross-sectional approaches that either do not consider patients with concomitant cardiorespiratory disease or account for pre-infection exercise capacity data. Accounting for V̇o2peak before COVID-19 and including a group of control patients, we find limited evidence for reduced exercise capacity as a sequela of SARS-CoV-2 infection in patients with concomitant cardiorespiratory disease.