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Helgeson, Scott A

0000-0001-7590-2293

Mayo Clinic

Digital Engineering & Artificial Intelligence Laboratory (DEAL), Mayo Clinic, Jacksonville, FL 32224, USA.

Citations 29

Pulmonary Function Test Order Redesign: A Quality Improvement Initiative
Sujanyal, Saurabh, Omercikoglu, Elcin , Alazab, Heba, Griffin, Angie, Koirala, Tapendra , Burger, Charles, Beagle, Lisa, Atkins, Shannon, Helgeson, Scott A. , Helgeson, Scott A , Alazab, Heba

Journal of Patient Safety | September 16, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.1097/pts.0000000000001590 Get It

Objectives: Pulmonary function tests (PFTs) are essential for diagnosis, management, and follow-up of a wide range of respiratory conditions as they provide quantitative insights into various aspects of lung function. Precision in ordering and scheduling PFTs, like any test, is crucial as errors can lead to misdiagnoses, delayed treatments, unnecessary retesting, inflated healthcare costs, and potentially compromised patient care. Hence, the aim of this quality improvement initiative was to reduce the PFT ordering error rate to below 5% by redesigning the ordering workflow and implementing a standardized order set tailored to specific clinical scenarios. Methods: The quality improvement initiative was implemented from August 2023 to March 2024. Data was collected from the electronic medical record (EMR) using predefined operational definitions to identify incorrect PFT orders and scheduling errors. A redesigned orderset was created to align with specific clinical presentations, including symptoms, suspected diagnosis, confirmed diagnosis, and presurgical evaluation. Scheduling was also restructured to match the expected testing time for each category. Education sessions were conducted with ordering providers, and ongoing feedback loops were established. Results: Among 575 preintervention PFT orders, 130 (22.6%) contained errors. Following implementation, review of 607 postintervention orders showed a reduction in error rates to 4.1%, representing an ∼80% improvement ( P <0.01). There was no increase in unnecessary testing, supporting the effectiveness of the intervention without unintended negative consequences. Conclusions: Implementation of a knowledge-based CDSS with standardized order sets significantly reduced PFT ordering errors and variability, improving guideline adherence and care quality. Continued refinement and integration with evolving technologies are essential for broader applicability.
Artificial Intelligence Enabled Diagnostics Using Photoplethysmography (PPG): Beyond SpO2 and Heart Rate
Joshi, Divya Dinesh, Saraboji, Kaaviyashri , Shaik, Asiya Tasleema , Sakalabaktula, Krishna Sai Kiran, Purohit, Shreya, Godugu, Swathi , Nirmal, Jasmine , Kayarkar, Riya, Correa, Bernardo Henrique Mendes , Gangidi, Namratha , Yadav, Pratibha, Yadav, Jyoti , Farook, Farshi , LEE, JIEUN , Shariff, Mohammed Naveed , Sundaram, Divaakar Siva Baala, Yerrapragada, Gayathri, Elangovan, Poonguzhali , Natarajan, T.K. , Janarthanan, Jayarajasekaran, Wilson, Sancia Mary Jerold, Karuppiah, Shiva Sankari, Abbasi, Zoma, Rapolu, Swetha, Bumrah, Simardeep Kaur, Bilgaiyan, Rashi, Premkumar, Chandra Rupini , Kaur, Anmolpreet , Pugalenthi, Lakshmi Sree , Sood, Divyanshi, Shivaram, Suganti, Iyer, Vivek , Vidhya, C. M., Masihi, Simin, Helgeson, Scott A. , Arunachalam, Shivaram P. , Natarajan, Thangeswaran , Jerold Wilson, Sancia Mary, Iyer, Vivek N , C M, Vidhya, Elangovan, Poonguzhali , Arunachalam, S P , Helgeson, Scott A , Shariff, Mohammad Naveed , Sakalabaktula, Krishna Sai Kiran , Godugu, Swathi , Yerrapragada, Gayathri, Bumrah, Simardeep Kaur, Bilgaiyan, Rashi , Shivaram, Suganti, Masihi, Simin

Life | September 15, 2026 | Volume: 16 | Issue: 9 | Pages: 1530

10.3390/life16091530 Get It

Photoplethysmography (PPG) is a non-invasive optical technique commonly used to measure heart rate and oxygen saturation, but its waveform contains additional physiological information that can be analyzed using artificial intelligence (AI). This narrative review summarizes the emerging applications of AI-based PPG in cardiovascular, respiratory, sleep, hemodynamic, pregnancy-related, and portal-hypertension assessment, with the aim of evaluating its potential beyond conventional monitoring and identifying barriers to clinical translation. The literature search was conducted using PubMed, Google Scholar, IEEE Xplore, ScienceDirect, and SpringerLink. Additional relevant studies were identified through screening the reference lists of included articles. Studies published between 2002 and 2026 were identified to capture the development of PPG from conventional monitoring to newer AI-based applications. Human studies were prioritized, while relevant computational, simulated, synthetic, ex vivo, and technical studies were also included. Studies unrelated to PPG, duplicates, and studies with limited relevance were excluded. A total of 96 references were included, covering AI approaches such as convolutional and deep neural networks, ensemble methods, transfer learning, U-Net, generative adversarial networks, and Transformer-based models. Overall, the reviewed evidence suggests that AI-based PPG may support blood pressure estimation, atrial fibrillation detection, sleep and respiratory monitoring, vascular aging assessment, pulmonary hypertension screening, preeclampsia assessment, volume-status and compensatory-reserve assessment, and exploratory assessment related to portal hypertension. However, clinical translation remains limited by motion artifacts, sensor and measurement-site variability, skin-pigmentation-related bias, physiological and environmental influences, heterogeneous methods, limited external validation, and inconsistent clinical and regulatory standards.
Operationalizing WHO Ethical Principles for Healthcare AI: A Lifecycle-Aligned Governance-by-Design Framework
Saraboji, Kaaviyashri , Gopalakrishnan, Keerthy, Sood, Divyanshi, Kaur, Anmolpreet , Shivaram, Suganti, Helgeson, Scott A. , Arunachalam, Shivaram P. , Mitra, Dipankar , Kaur, Anmolpreet , Arunachalam, S P , Helgeson, Scott A

AI in Medicine | June 10, 2026 | Volume: 1 | Issue: 2 | Pages: 16

10.3390/aimed1020016 Get It

Artificial intelligence (AI) is rapidly transforming healthcare through applications in clinical decision support, diagnostic imaging, population health management, and workflow optimization. Despite these advances, real-world deployment continues to expose critical challenges related to safety, bias, transparency, and integration into clinical workflows. Algorithmic bias can exacerbate health disparities, limited explainability may undermine clinician trust, and insufficient validation and post-deployment monitoring can compromise patient safety. Although the World Health Organization (WHO) has established six ethical principles for AI in health, including autonomy, well-being and safety, transparency, accountability, equity, and sustainability, translating these high-level principles into practical and enforceable governance mechanisms remains a persistent challenge. This narrative review synthesizes insights from bioethics, health policy, computer science, and clinical medicine to identify gaps in current AI governance approaches and proposes a lifecycle-aligned governance-by-design framework that operationalizes WHO ethical principles across key stages of the healthcare AI lifecycle, including data collection, model development, validation, deployment, and post-deployment monitoring. The framework integrates concrete governance mechanisms such as consent governance, fairness evaluation, external validation, explainability, clinician oversight, and continuous performance monitoring. Overall, this work advances a practical, lifecycle-integrated approach to AI governance and provides a structured foundation for developing safe, equitable, and trustworthy AI systems in healthcare.
The Association of Microplastics in Peripheral Blood and Pulmonary Disease: A Pilot Study
Helgeson, Scott A. , Alaws, Hossny, Ibrahim, Mohamed I. , Lee, Augustine S., Vlecken, Danielle H. W. , Baig, Hassan , Lee, Augustine S. , Lee, Augustine S , Baig, Hassan Z , Helgeson, Scott A , Vlecken, Danielle H. W.

Journal of Xenobiotics | April 29, 2026 | Volume: 16 | Issue: 3 | Pages: 72

10.3390/jox16030072 Get It

Microplastics may pose health risks, particularly for chronic lung diseases. Clarifying the link between circulating microplastics and pulmonary disease is vital for shaping research and interventions. The objective of this study was to evaluate whether microplastics in peripheral blood are associated with COPD or IPF vs. no lung disease. In this pilot prospective case-control study, participants were grouped as control (n = 10), COPD (n = 9), or IPF (n = 10). Relevant comorbidities and exposures were obtained from records and questionnaires. All underwent standardized blood collection (PlasticTox©). Samples were analyzed for total microplastic concentration, stratified by size (<10 µm, 10–30 µm, 30–70 µm). The primary outcome was to show a difference in total microplastic burden between lung disease and controls. Secondary measures were to determine size-specific concentrations and associations with demographic variables and smoking history. Among 29 participants (median age 70 (IQR 64–80); 14 women (48.3%)), COPD/IPF groups had significantly higher total microplastic concentrations vs. controls (median 26.0 vs. 3.5 particles/100 µL; p < 0.01). Particle burdens <10 µm and 10–30 µm were particularly elevated (both p < 0.01). After adjusting for smoking, only the <10 µm fraction remained independently associated with lung disease (adjusted odds ratio 1.94 (95% CI, 1.23–7.04)). In this pilot exploratory study, individuals with COPD or IPF showed greater circulating microplastic levels than controls. These findings should be interpreted as hypothesis-generating, and larger analytically validated studies are needed to clarify directionality, causal mechanisms, contamination control, and the clinical relevance of circulating microplastic burden.
Blood Pressure Variability (BPV) as a Novel Digital Biomarker of Multisystem Risk and Diagnostic Insight: Measurement, Mechanisms, and Emerging Artificial Intelligence Methods
Pugalenthi, Lakshmi Sree , Senapati, Sidhartha Gautam , Gohri, Jay , Anam, Hema Latha, Madan, Hritik, Arora, Adi , Arora, Avni, LEE, JIEUN , Yerrapragada, Gayathri, Elangovan, Poonguzhali, Shariff, Mohammed Naveed , Natarajan, T.K. , Janarthanan, Jayarajasekaran, Agarwal, Shreshta, Karuppiah, Shiva Sankari, Sood, Divyanshi, Rapolu, Swetha, Iyer, Vivek, Helgeson, Scott A. , Arunachalam, Shivaram P. , Iyer, Vivek , Elangovan, Poonguzhali , Elangovan, Poonguzhali , Natarajan, Thangeswaran , Agarwal, Shreshta , Iyer, Vivek N , Arunachalam, S P , Helgeson, Scott A , Shariff, Mohammad Naveed , Yerrapragada, Gayathri

Biomedicines | January 30, 2026 | Volume: 14 | Issue: 2 | Pages: 317

10.3390/biomedicines14020317 Get It

Hypertension has been traditionally known to be highlighted by mean blood pressure; however, emerging evidence exhibits that blood pressure variability (BPV), including short-term, day-to-day, and visit-to-visit fluctuations can have an implication across multiple body systems. Elevated BPV reflects repetitive hemodynamic stress, affecting the physiologic hemostasis contributing to vascular injury and end organ damage. This narrative review is a compilation of recent evidence on the prognostic value of BPV, explained by pathophysiology, various devices with its measurement approaches, and, essentially, the clinical implication of BPV and the use of such devices utilizing artificial intelligence. A comprehensive literature search across PubMed, Cochrane Library, Scopus, and Web of Science were conducted, focusing on observational studies, cohorts, randomized trials, and meta-analyses. Higher BPV has been associated with an increased risk of cardiovascular mortality, stroke, coronary events, and heart failure, the progression of chronic kidney disease, cognitive decline, and preeclampsia, among other end organ damage, despite mean blood pressure. The various pathophysiologic mechanisms include autonomic dysregulation, arterial stiffness, endothelial dysfunction, circadian rhythm alteration, and systemic inflammation, which result in vascular remodeling and multisystem damage. Antihypertensive medications such as calcium channel blockers and renin–angiotensin–aldosterone system inhibitors seem to reduce BPV; randomized trials have not specifically investigated their BPV-reducing effects. The aim of this review is to highlight that BPV is a dynamic marker of multisystem risk, and question how various AI-based devices can aid continuous BPV monitoring and patient specific risk stratification.
Empirical Mode Decomposition-Based Deep Learning Model Development for Medical Imaging: Feasibility Study for Gastrointestinal Endoscopic Image Classification
Deb, Mou, Dhar, Mrinal Kanti , Elangovan, Poonguzhali , Gopalakrishnan, Keerthy, Sood, Divyanshi, Sethi, Aaftab, Afroze, Sabah , Bansal, Sourav , Goudel, Aastha , Parikh, Charmy, Kaur, Avneet , Rapolu, Swetha, Panjwani, Gianeshwaree Alias Rachna , ANSARI, RABIAH ASLAM, Asadimanesh, Naghmeh, Karuppiah, Shiva Sankari, Helgeson, Scott A. , Arunachalam, Shivaram P. , Elangovan, Poonguzhali , Arunachalam, S P , Helgeson, Scott A , Panjwani, Gianeshwaree Alias Rachna , SETHI, AAFTAB, Asadimanesh, Naghmeh , Akshintala, Venkata S.

Journal of Imaging | December 22, 2025 | Volume: 12 | Issue: 1 | Pages: 4

10.3390/jimaging12010004 Get It

This study proposes a novel two-dimensional Empirical Mode Decomposition (2D EMD)-based deep learning framework to enhance model performance in multi-class image classification tasks and potential early detection of diseases in healthcare using medical imaging. To validate this approach, we apply it to gastrointestinal (GI) endoscopic image classification using the publicly available Kvasir dataset, which contains eight GI image classes with 1000 images each. The proposed 2D EMD-based design procedure decomposes images into a full set of intrinsic mode functions (IMFs) to enhance image features beneficial for AI model development. Integrating 2D EMD into a deep learning pipeline, we evaluate its impact on four popular models (ResNet152, VGG19bn, MobileNetV3L, and SwinTransformerV2S). The results demonstrate that subtracting IMFs from the original image consistently improves accuracy, F1-score, and AUC for all models. The study reveals a notable enhancement in model performance, with an approximately 9% increase in accuracy compared to counterparts without EMD integration for ResNet152. Similarly, there is an increase of around 18% for VGG19L, 3% for MobileNetV3L, and 8% for SwinTransformerV2. Additionally, explainable AI (XAI) techniques, such as Grad-CAM, illustrate that the model focuses on GI regions for predictions. This study highlights the efficacy of 2D EMD in enhancing deep learning model performance for GI image classification, with potential applications in other domains.
Artificial Intelligence Enabled Lung Sound Auscultation in the Early Diagnosis and Subtyping of Interstitial Lung Disease
Kaur, Avneet , Cherukuri, Swathi Priya , Handral, Megha Sasidhar, Kukunoor, Hanisha Reddy , Kc, Rikesh, Godugu, Swathi , Lee, Jieun , Yerrapragada, Gayathri, Elangovan, Poonguzhali , Shariff, Mohammed Naveed , Natarajan, T.K. , Janarthanan, Jayarajasekaran, Kala, Jayavinamika Jayapradhaban, Wilson, Sancia Mary Jerold, Richard, Samuel, Karrupiah, Shiva Sankari, Mitra, Dipankar , Iyer, Vivek , Helgeson, Scott A. , Arunachalam, Shivaram P. , Handral, Megha Shashidhar, Natarajan, Thangeswaran , Jayapradhaban Kala, Jayavinamika, Jerold Wilson, Sancia Mary, Iyer, Vivek N , Elangovan, Poonguzhali , Arunachalam, S P , Helgeson, Scott A , Shariff, Mohammad Naveed , Wilson, Sancia Mary Jerold

Journal of Clinical Medicine | December 8, 2025 | Volume: 14 | Issue: 23 | Pages: 8500

10.3390/jcm14238500 Get It

Background: Interstitial lung disease (ILD) involves numerous chronic pulmonary conditions that damage the lung parenchyma and alveolar interstitium. ILD has overlapping clinical and radiological features with other commonly seen cardiac and respiratory conditions. If not identified and treated in a timely manner, it may lead to irreversible fibrosis and a poor prognosis in the patient. The current diagnostic methods are either invasive or reliant on imaging or specialist interpretation, which can lead to diagnostic delay, increased radiation exposure, and healthcare costs. Lung crackles, often under-recognized as a non-specific feature of ILD, may serve as an important diagnostic clue in identifying not only the early stages of ILD but also its subtypes. This review explores the potential of analyzing the lung sounds in ILD through AI-based auscultation. Objective: To provide a comprehensive analysis of the pathophysiological stages of lung injury in ILD, the specific acoustic features, and the location associated with each ILD subtype and to evaluate the current state-of-the-art non-AI and AI methodologies that are used to diagnose ILD. This review aims to analyze the limitations associated with the current modalities and to envision AI-integrated auscultation as a powerful, cost-effective, non-invasive, radiation-free screening tool for early detection of ILD and its subtypes. Content Overview: The review begins with a detailed analysis of the lung sound pathophysiology, exploring the two-stage mechanism of alveolar epithelial injury and fibrosis formation. Existing hypotheses explaining the mechanism behind crackle production and the role of structural anatomy and surface tension in the generation of pathological lung sounds are examined. A tabulated summary of common ILD subtypes is provided, including their inciting events, pathogenesis, anatomical auscultation locations, and prognostic implications. Current diagnostic modalities for ILD, both non-AI and AI-based, are summarized along with their limitations, emphasizing the need for improved diagnostic tools. Discussion: Existing studies suggest that AI-based auscultation can match or exceed the current modalities in its sensitivity and specificity for detecting ILD-related crackles. Clinicians can identify the specific sound pattern and then correlate it with the ILD subtype and understand the prognosis in real time, thereby providing timely intervention to the patient. Additionally, AI-based auscultation can be used in resource-limited settings and can potentially reduce dependence on pulmonology expertise and radiation-based imaging for monitoring the condition. Conclusions: This literature review highlights the clinical potential of AI-based auscultation for early and accurate diagnoses of ILD. Understanding the associated pathological sounds, biomarkers, and genetic mutations linked to different subtypes opens avenues for future development of non-invasive diagnostic panels for ILD in clinical practice.
A Novel Unsupervised You Only Listen Once (YOLO) Machine Learning Platform for Automatic Detection and Characterization of Prominent Bowel Sounds Towards Precision Medicine
Yerrapragada, Gayathri, Lee, Jieun , Shariff, Mohammed Naveed , Elangovan, Poonguzhali , Gopalakrishnan, Keerthy, Kaur, Avneet , Sood, Divyanshi, Rapolu, Swetha, Gohri, Jay , Panjwani, Gianeshwaree Alias Rachna , Ansari, Rabiah Aslam, Mikkilineni, Jahnavi, Asadimanesh, Naghmeh, Natarajan, T.K. , Janarthanan, Jayarajasekaran, Karuppiah, Shiva Sankari, Iyer, Vivek , Helgeson, Scott A. , Arunachalam, Shivaram P. , Shariff, Mohammad Naveed , Natarajan, Thangeswaran , Iyer, Vivek N , Arunachalam, S P , Elangovan, Poonguzhali , Helgeson, Scott A , Panjwani, Gianeshwaree Alias Rachna , Yerrapragada, Gayathri, Ansari, Rabiah Aslam, Akshintala, Venkata S.

Bioengineering | November 19, 2025 | Volume: 12 | Issue: 11 | Pages: 1271

10.3390/bioengineering12111271 Get It

Phonoenterography (PEG) offers a non-invasive and radiation-free technique to assess gastrointestinal activity through acoustic signal analysis. In this feasibility study, 110 high-resolution PEG recordings (44.1 kHz, 16-bit) were acquired from eight healthy individuals, yielding 6314 prominent bowel sound (PBS) segments through automated segmentation. Each event was characterized using a 279-feature acoustic profile comprising Mel-frequency cepstral coefficients (MFCCs), their first-order derivatives (Δ-MFCCs), and six global spectral parameters. After normalization and dimensionality reduction with PCA and UMAP (cosine distance, 35 neighbors, minimum distance = 0.01), five clustering strategies were evaluated. K-Means (k = 5) achieved the most favorable balance between cluster quality (silhouette = 0.60; Calinski–Harabasz = 19,165; Davies–Bouldin = 0.68) and interpretability, consistently identifying five acoustic patterns: single-burst, multiple-burst, harmonic, random-continuous, and multi-modal. Temporal modeling of clustered events further revealed distinct sequential dynamics, with Single-Burst events showing the longest dwell times, random continuous the shortest, and strong diagonal elements in the transition matrix confirming measurable state persistence. Frequent transitions between random continuous and multi-modal states suggested dynamic exchanges between transient and overlapping motility patterns. Together, these findings demonstrate that unsupervised PEG-based analysis can capture both acoustic variability and temporal organization of bowel sounds. This annotation-free approach provides a scalable framework for real-time gastrointestinal monitoring and holds potential for clinical translation in conditions such as postoperative ileus, bowel obstruction, irritable bowel syndrome, and inflammatory bowel disease.
MAPD2: Mobile Application-based Pulmonary Disease Detector Using Electrocardiograms and Deep Learning
Interlichia, Natasha , Vanaparthi, Hari Sree Lalitha Vardhini , Liu, Xudong , Nasseri, Mona , Helgeson, Scott A. , Helgeson, Scott A

Proceedings of the ACM/IEEE International Conference on Connected Health: Applications, Systems and Engineering Technologies | November 12, 2025 | Volume: No volume available | Issue: No issue available | Pages: 498-499

10.1145/3721201.3725506 Get It

Leveraging Artificial Intelligence for the Diagnosis of Systemic Sclerosis Associated Pulmonary Arterial Hypertension: Opportunities, Challenges, and Future Perspectives
Jain, Samiksha , Kaur, Avneet , Qadeer, Abdul , Ghosh, Victor , Thota, Shivani, Banala, Mallareddy , Lee, Jieun , Yerrapragada, Gayathri, Poonguzhali, E. , Shariff, Mohammed Naveed , Natarajan, T.K. , Janarthanan, Jayarajasekaran, Kala, Jayavinamika Jayapradhaban, Richard, Samuel, Vommi, Saai Poornima, Karuppiah, Shiva Sankari, Muthyala, Anjani, Iyer, Vivek , Helgeson, Scott A. , Mitra, Dipankar , Arunachalam, Shivaram P. , Natarajan, Thangeswaran , Jayapradhaban Kala, Jayavinamika, Iyer, Vivek N , Arunachalam, S P , Helgeson, Scott A , Shariff, Mohammad Naveed , Qadeer, Abdul , Thota, Shivani

Advances in Respiratory Medicine | October 17, 2025 | Volume: 93 | Issue: 5 | Pages: 47

10.3390/arm93050047 Get It

Systemic sclerosis-associated pulmonary arterial hypertension (SSc-PAH) is a life-threatening vascular complication of SSc, marked by high morbidity and mortality. Early diagnosis remains a major challenge due to nonspecific symptoms and the limitations of conventional tools such as echocardiography (ECHO), pulmonary function tests (PFTs), and serum biomarkers. This review evaluates the emerging role of artificial intelligence (AI), particularly machine learning (ML) and deep learning (DL), in improving the diagnostic landscape of SSc-PAH. A comprehensive literature search was conducted across PubMed, Scopus, IEEE Xplore, Embase and Google Scholar to identify studies involving AI applications in SSc, pulmonary arterial hypertension (PAH), and their intersection. Evidence indicates that AI models can assist interpretation across modalities, including heart sounds, ECGs, chest X-rays (CXRs), ECHOs, CT pulmonary angiography (CTPA), and omics-based biomarkers. While several models show encouraging diagnostic performance, their accuracy varies by dataset and modality, and most require external validation against right heart catheterization (RHC)-confirmed cohorts. Integrating multimodal data through AI frameworks may enhance early recognition and individualized risk stratification; however, these tools remain exploratory. Future work should emphasize harmonized hemodynamic definitions, transparent validation protocols, and SSc-specific datasets to ensure clinical applicability and reproducibility.