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Ganji, Sandeep

https://orcid.org/0000-0002-0247-7596

Mayo Clinic

Mayo Clinic

Citations 9

Fast Localized Calibration for Spatial‐Spectral Excitation Without Fly‐Back Gradients
Schär, Michael , Ganji, Sandeep , Ganji, Sandeep K , Schär, Michael , Weiss, Robert G., Hays, Allison G

Magnetic Resonance in Medicine | July 9, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.1002/mrm.70508 Get It

ABSTRACT Purpose Standard spatial‐spectral excitation pulses apply a fly‐back gradient between sub‐pulses, limiting, for example, how thin the slices can be (> 4 mm). Without fly‐back gradients, slices can be as thin as 1.7 mm but require a phase calibration for the sub‐pulses with inverted gradients due to system imperfections. Here we propose and test a fast (< 1 s), localized pre‐scan enabling thin‐slice frequency‐selective excitation. Methods The calibration pre‐scan determines the correction phase between even and odd sub‐pulses by measuring the phase difference of two FIDs excited with either the last or second‐to‐last RF sub‐pulse of the spatial‐spectral pulse. Non‐localized and localized versions of the calibration pre‐scan are tested and validated for water‐only excitation in phantoms and the human heart. As an example, breath‐held coronary MR angiography is performed with a spiral multi‐slice sequence employing the proposed pulses with a slice thickness of 1.7 mm. Results The proposed calibration pre‐scan takes 11.1 ms per slice, whether it is localized or not. Localized calibration phases are validated with an image‐based calibration map. Slice profiles are visualized for pulses with different time‐bandwidth products. Fat is suppressed to below 20% and 25% of the surrounding water signal in both phantoms and the human heart, respectively. High‐quality coronary angiograms are demonstrated in all test subjects. Conclusion Spatial‐spectral pulses without fly‐back gradients can be calibrated quickly (up to 90 slices in 1 s), enabling thinner slices, higher excitation angles, or pulses with sharper slice profiles using waveforms with higher time‐bandwidth products.
Biomechanical characterization of thyroid-stimulating hormone–secreting pituitary adenoma using in vivo MR elastography and in vitro nanoindentation: illustrative case
Gautam, Umesh, Tripathi, Shivani , Bhat, Priyanka, Jangir, Hemlata , Suri, Vaishali, Garg, Ajay , Kumaran, S. Senthil , Roy, Sitikantha , Suri, Ashish, Ganji, Sandeep , Mariappan, Yogesh Kannan , Garg, Ajay , Kumaran, S Senthil , Gautam, Umesh , Bhat, Priyanka, Ganji, Sandeep K , Mariappan, Yogesh K. , Suri, Vaishali S.

Journal of Neurosurgery: Case Lessons | May 20, 2026 | Volume: 11 | Issue: 21 | Pages: No page available

10.3171/case25402 Get It

BACKGROUND Thyroid-stimulating hormone (TSH)–secreting pituitary adenomas (TSHomas) are rare lesions that result in secondary hyperthyroidism. MR elastography (MRE) is an emerging imaging modality capable of assessing the mechanical properties of tissues, offering valuable insights into tumor consistency for improved preoperative planning and resection. OBSERVATIONS A 16-year-old female diagnosed with a giant TSHoma underwent endoscopic transnasal transsphenoidal excision. The mechanical properties of TSHoma were assessed using preoperative MRE and in vitro nanoindentation on excised specimen. Collagen content was also evaluated. Based on its appearance on MRE, a neuroradiologist predicted the tumor would be soft, and it was found to be soft during the surgery. Interestingly, the in vitro shear storage and loss moduli closely match the in vivo findings. Additionally, the tumor tissue has up to 20% collagen content in intratumoral areas. LESSONS MRE is a reliable and clinically valuable tool for preoperative evaluation of tumor consistency in rare TSHomas. The strong concordance between MRE findings, intraoperative texture, and in vitro mechanical measurements underscores the potential of MRE to guide surgical planning, reduce operative complexity, and improve clinical outcomes, especially in uncommon and challenging cases. https://thejns.org/doi/10.3171/CASE25402
Directional interface mechanics using magnetic resonance elastography predicts focal tumor recurrence in glioblastomas
Aunan‐Diop, Jan Saip , Friismose, Ancuta Ioana , Hojo, Emi , Ganji, Sandeep , Le, Yuan, Harbo, Frederik, Halle, Bo , Poulsen, Frantz Rom , Yin, Ziying , Hojo, Emi , Ganji, Sandeep K , Halle, Bo , Poulsen, Frantz Rom , Friismose, Ancuta I , Yin, Ziying , Harbo, Frederik Severin Gråe

No container title available | May 18, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.64898/2026.05.06.26352294 Get It

Abstract Glioblastoma progression is spatially heterogeneous, but conventional imaging provides limited information about where subsequent tumor progression is likely to occur. We developed a directional magnetic resonance elastography (MRE) framework to test whether local post-treatment tumor–brain interface mechanics are associated with later spatial tumor progression. In a secondary analysis of a prospectively acquired glioblastoma cohort, wedge-level viscoelastic instability features were extracted from the first post-treatment MRE scan and related to novel tumor burden on the second post-treatment scan after excluding tumor already present on pretreatment or first post-treatment imaging. Nine patients had longitudinal imaging suitable for spatial comparison; six lesions showed net interval growth and were included in the primary wedge-level directional analysis, while three non-growing lesions were retained for descriptive comparison. In growing lesions, several directional mechanical features were descriptively associated with later novel tumor burden. In cluster-aware models accounting for within-patient dependence among wedges, mean Δtanδ showed the most consistent association with later wedge-level novel tumor fraction across mixed-effects and generalized estimating equation analyses. Associations were directionally stable across wedge-width sensitivity analyses. These findings provide proof of principle that post-treatment glioblastoma interface mechanics contain spatially resolved information related to where later tumor emergence occurs, supporting further validation of directional MRE as a framework for longitudinal mapping of progression geometry.
Simultaneous Assessment of Skeletal Muscle Energetics and Blood Flow During Dynamic Exercise by Interleaved 31 P ‐
Samuel, T. Jake , Ganji, Sandeep , Goldenberg, Joseph R. , Weiss, Robert G. , Schär, Michael , Ganji, Sandeep K , Lewsey, Sabra C , Hays, Allison G , Weiss, Robert G , Schär, Michael

Magnetic Resonance in Medicine | March 18, 2026 | Volume: 96 | Issue: 1 | Pages: 13-26

10.1002/mrm.70337 Get It

ABSTRACT Purpose To simultaneously measure skeletal muscle energetics and blood flow (BF) before, during, and after dynamic plantar flexion exercise (PFE). Methods Non‐localized pulse‐acquire phosphorus‐31 magnetic resonance spectroscopy ( 31 P MRS) and phase contrast flow magnetic resonance imaging ( 1 H MRI) using golden‐angle rotated spiral readouts were acquired in an interleaved fashion. Data were collected at rest, during PFE to volitional fatigue, and post‐exercise recovery in 10 healthy adults. Interleaved popliteal artery BF was validated against conventional cine phase‐contrast measures at rest and post‐exercise recovery, while calf muscle energetics were validated by comparing to conventional 31 P MRS‐only measures at rest. To minimize motion artifacts during dynamic PFE, flow data were resolved in 3 dimensions (cardiac phase, pedal position, and exercise stage). Results Resting phosphocreatine (PCr) and inorganic phosphate concentrations were similar between both techniques (both p > 0.05). During PFE, PCr declined to 46% ± 10% of rest. PCr recovery time was 43 ± 15 s. Resting BF was 132 ± 43 mL/min and increased up to four‐fold during PFE depending on exercise stage and pedal position. Notably, there was excellent agreement between the interleaved and conventional BF measures ( r 2 = 0.95, slope = 0.977, p < 0.0001) with minimal bias (12.62 mL/min) over a wide range of physiologically relevant BF values (from ∼60 to 600 mL/min). Conclusion The feasibility of simultaneous assessment of skeletal muscle energetics and BF during dynamic exercise by interleaved 31 P MRS/ 1 H flow MRI was demonstrated along with good agreement between interleaved and conventional techniques during rest and recovery. One can now simultaneously quantify critical BF‐metabolism relationships and use this to probe disease‐related adaptations.
Dynamic MRI of Fluid and Solute Transportation across the Arachnoid Barrier in the Human Meninges
Li, Yinghao , Sun, Yuanqi, Paez, Adrian , Xu, Gaoqiang , Pillai, Jay J. , Iliff, Jeffrey J., Ganji, Sandeep , Knutsson, Linda, Zijl, Peter C. M. Van, Calabresi, Peter A., Sun, Yuanqi , Knutsson, Linda , Sun, Yang-bai , Sun, Yuanqi , Iliff, Jeffrey , Ganji, Sandeep K , Knutsson, Linda , Calabresi, Peter A , Hua, Jun , Pillai, Jay J , Iliff, Jeffrey J. , Zijl, Peter C.M. van , Kamson, David , Calabresi, Peter A.

Radiology | February 24, 2026 | Volume: 318 | Issue: 2 | Pages: No page available

10.1148/radiol.252393 Get It

Dynamic fluid and solute transportation across the arachnoid barrier in the meninges of healthy participants was measured by tracking intravenous gadolinium-based contrast agent entering cerebrospinal fluid from dural blood vessels using dynamic dual-spin-echo perfusion MRI.
Magnetic Resonance Spectroscopy of 2‐Hydroxyglutarate and Glycine in Adult Subjects With Brainstem Gliomas
Ganji, Sandeep , An, Zhongxu , Davis, L. Taylor , Berry, Julia D., Luo, Leo Y. , Mohler, Alexander, Merrell, Ryan , Kelly, Patrick D. , Thompson, Reid C., Mickey, Bruce , Gore, John C. , Maher, Elizabeth A. , Choi, Changho , Ganji, Sandeep K, An, Zhongxu , Luo, Leo Y , Kelly, Patrick D , Ganji, Sandeep K , Tiwari, Vivek , Pinho, Marco C. , McKnight, Colin D. , Mobley, Bret C. , Malloy, Craig R. , Patel, Toral

NMR in Biomedicine | September 30, 2025 | Volume: 38 | Issue: 11 | Pages: No page available

10.1002/nbm.70153 Get It

ABSTRACTSurgical biopsy of brainstem tumors carries a risk of neurological injury. We performed magnetic resonance spectroscopy (MRS) of 2‐hydroxyglutarate (2HG) and glycine in patients with brainstem tumors to assess the feasibility of detecting and quantifying 2HG in the brainstem to obviate the need for a diagnostic biopsy and to establish the clinical significance of glycine MRS in brainstem tumors in vivo. Twenty adult patients with radiographically identified presumed brainstem gliomas were prospectively enrolled in the study. Proton MRS was obtained at 3T with a protocol tailored for detection of 2HG and glycine (TE 97‐ms PRESS). Spectra were fit using LCModel software and in‐house basis signals of metabolites and lipids. The metabolite concentrations were quantified with reference to water and examined with respect to clinical outcomes, including postgadolinium MRI and overall survival time. MRS data from 19 patients were included in subsequent analysis, excluding suboptimal data from one patient. Tumors with elevated 2HG (> 1.9 mM, N = 8) and undetectable 2HG (< 0.3 mM, N = 11) were clearly distinguishable. Tumors with elevated glycine (> 1.5 mM, N = 4) showed rapid progression. Kaplan–Meier survival analyses with metabolite measures demonstrated that tumors with 2HG higher than 1.0 mM were significantly associated with a favorable prognosis (p = 0.01). In contrast, tumors with glycine higher than 2.5 mM showed a strong association with poor survival (p = 0.0005). The data confirm detection of 2HG in brainstem tumors at a concentration that is consistent with an IDH mutation and expected good prognosis, whereas elevated glycine in brainstem tumors portends rapid tumor progression and a worse prognosis.
Real‐Time 2D Phase‐Contrast MRI to Assess Cardiac‐ and Respiratory‐Driven CSF Movement in Normal Pressure Hydrocephalus
Karki, Pragalv , Murphy, Matthew C. , Ganji, Sandeep , Gunter, Jeffrey L. , Graff‐Radford, Jonathan, Cutsforth‐Gregory, Jeremy K. , Elder, Benjamin D. , Jack, Clifford R. , Jack, Clifford R , Ganji, Sandeep K , Graff‐Radford, Jonathan , Jones, David T. , Botha, Hugo , Huston, John , Cogswell, Petrice M.

Journal of Neuroimaging | December 31, 2024 | Volume: 35 | Issue: 1 | Pages: No page available

10.1111/jon.70000 Get It

ABSTRACT Background and Purpose In idiopathic normal pressure hydrocephalus (iNPH) patients, cerebrospinal fluid (CSF) flow is typically evaluated with a cardiac‐gated two‐dimensional (2D) phase‐contrast (PC) MRI through the cerebral aqueduct. This approach is limited by the evaluation of a single location and does not account for respiration effects on flow. In this study, we quantified the cardiac and respiratory contributions to CSF movement at multiple intracranial locations using a real‐time 2D PC‐MRI and evaluated the diagnostic value of CSF dynamics biomarkers in classifying iNPH patients. Methods This study included 37 participants: 16 iNPH, 10 Alzheimer's disease (AD), and 11 cognitively unimpaired (CU) controls. Anatomical and real‐time (non‐gated) PC images were acquired in a 3T Philips scanner. CSF flow was assessed at the foramen magnum, fourth ventricle, Sylvian fissure, lateral ventricle, and cerebral aqueduct. We calculated three CSF dynamics biomarkers: mean velocity amplitude, cardiac signal power, and respiratory signal power. Biomarkers from each location were evaluated for classifying iNPH versus AD and CU using support vector machine (SVM). A p ‐value of 0.05 or less was considered statistically significant. Results The velocity amplitude and cardiac signal power were significantly reduced in iNPH compared to CU ( p < 0.005) and AD ( p < 0.05) at the lateral ventricle. The SVM model using biomarkers from the lateral ventricle performed significantly better at classifying iNPH than the other locations in terms of accuracy ( p < 0.005) and diagnostic odds ratio ( p < 0.05). Conclusion Evaluation of CSF movement beyond the cerebral aqueduct may aid in identifying patients with and understanding the pathophysiology of iNPH.
Mitochondrial oxidative phosphorylation capacity in skeletal muscle measured by ultrafast Z ‐spectroscopy ( UFZ ) MRI
Ju, Licheng , Wang, Kexin , Li, Anna , Wu, Yihan , Samuel, T. Jake , Ganji, Sandeep , Yadav, Nirbhay N. , Weiss, Robert G. , Xu, Jiadi , Wang, Kexin , Xu, Jiadi , Ganji, Sandeep K , Schär, Michael , Zijl, Peter C.M. van

Magnetic Resonance in Medicine | October 21, 2024 | Volume: 93 | Issue: 3 | Pages: 1273-1284

10.1002/mrm.30354 Get It

Abstract Purpose To investigate the feasibility of rapid CEST MRI acquisition for evaluating oxidative phosphorylation (OXPHOS) in human skeletal muscle at 3T, utilizing ultrafast Z‐spectroscopy (UFZ) combined with MRI and the Polynomial and Lorentzian line‐shape Fitting (PLOF) technique. Methods UFZ MRI on muscle was evaluated with turbo spin echo (TSE) and 3D EPI readouts. Five healthy subjects performed in‐magnet plantar flexion exercise (PFE) and subsequent changes of amide, PCr, and partial PCr mixed Cr (Cr + ) CEST dynamic signals post‐exercise were enabled by PLOF fitting. PCr/Cr CEST signal was further refined through pH correction by using the ratios between PCr/Cr and amide signals, named PCAR/CAR, respectively. Results UFZ MRI with TSE readout significantly reduces acquisition time, achieving a temporal resolution of <50 s for collecting high‐resolution Z‐spectra. Following PFE, the recovery/decay times (τ) for both PCr and Cr in the gastrocnemius muscle of the calf were notably longer when determined using PCr/Cr CEST compared to those after pH correction with amideCEST, namely = 87.1 ± 15.8 s and = 98.1 ± 20.4 s versus = 32.9 ± 19.7 s and = 43.0 ± 13.0 s, respectively. obtained via 31 P MRS ( = 50.3 ± 6.2 s) closely resemble those obtained from pH‐corrected PCr/Cr CEST signals. Conclusion The outcomes suggest potential of UFZ MRI as a robust tool for non‐invasive assessment of mitochondrial function in skeletal muscles. pH correction is critical for the reliable OXPHOS measurement by CEST.
J‐Difference editing (MEGA) of lactate in the human brain at 3T
Robison, Ryan K. , Haynes, Justin R., Ganji, Sandeep , Nockowski, Charles P., Kovács, Zoltán , Morgan, Victoria L. , Smith, Seth A., Thompson, Reid C., Gore, John C. , Choi, Changho , Ganji, Sandeep K, Choi, Changho , Morgan, Victoria L , Ganji, Sandeep K , Pham, Wellington N. , Omary, Reed A.

Magnetic Resonance in Medicine | May 8, 2023 | Volume: 90 | Issue: 3 | Pages: 852-862

10.1002/mrm.29693 Get It

PurposeThe need to detect and quantify brain lactate accurately by MRS has stimulated the development of editing sequences based on J coupling effects. In J‐difference editing of lactate, threonine can be co‐edited and it contaminates lactate estimates due to the spectral proximity of the coupling partners of their methyl protons. We therefore implemented narrow‐band editing 180° pulses (E180) in MEGA‐PRESS acquisitions to resolve separately the 1.3‐ppm resonances of lactate and threonine.MethodsTwo 45.3‐ms rectangular E180 pulses, which had negligible effects 0.15‐ppm away from the carrier frequency, were implemented in a MEGA‐PRESS sequence with TE 139 ms. Three acquisitions were designed to selectively edit lactate and threonine, in which the E180 pulses were tuned to 4.1 ppm, 4.25 ppm, and a frequency far off resonance. Editing performance was validated with numerical analyses and acquisitions from phantoms. The narrow‐band E180 MEGA and another MEGA‐PRESS sequence with broad‐band E180 pulses were evaluated in six healthy subjects.ResultsThe 45.3‐ms E180 MEGA offered a difference‐edited lactate signal with lower intensity and reduced contamination from threonine compared to the broad‐band E180 MEGA. The 45.3 ms E180 pulse had MEGA editing effects over a frequency range larger than seen in the singlet‐resonance inversion profile. Lactate and threonine in healthy brain were both estimated to be 0.4 ± 0.1 mM, with reference to N‐acetylaspartate at 12 mM.ConclusionNarrow‐band E180 MEGA editing minimizes threonine contamination of lactate spectra and may improve the ability to detect modest changes in lactate levels.