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AbstractBackgroundPhase four of the Alzheimer’s Disease Neuroimaging Initiative (ADNI4) began in 2023. This time‐period corresponded to MRI vendors introducing product sequences with compressed sensing (CS), cross‐vendor adoption of arterial spin‐labelling (ASL) and multi‐band slice excitation, and hardware improvements (head‐coils, increased gradient amplitudes). These advances enabled the acquisition of new imaging measures and reduced scan times. The ADNI4 MRI protocol aims to maintain longitudinal consistency across two decades of data acquisition, while adopting new technologies. Here we describe the design and justification behind the ADNI4 protocol and list the target imaging biomarkers.MethodsThe ADNI4 MRI protocol includes 9 MRI sequences; i) T1‐weighted (T1w) MP‐RAGE, ii) a compressed sensing T1w MP‐RAGE, iii) 3D T2w FLAIR, iv) structural isotropic 3D T2w v) T2*‐weighted susceptibility imaging vi) multi‐post labelling delay (PLD) 3D ASL, vii) 2D multi‐band‐multiple‐shell diffusion (dMRI), viii) 2D multi‐band EPI BOLD ix) high resolution, limited field of view, imaging centered on the hippocampus. Table 1 gives a detailed summary of the key protocol parameters and lists some of the imaging biomarkers that can be obtained from each series.ResultsStructural imaging was kept consistent across imaging sites. Variations in vendor specific sequences, software upgrades, and hardware performance capabilities, resulted in variations in advanced imaging strategies. Table 2 highlights the advanced sequences introduced in ADNI4, which will gradually be implemented as the required upgrades and licenses are obtained at each site. The main advanced sequences that are new in ADNI4 from ADNI 3 are i) CS for T1w images, ii) pseudo‐continuous‐ASL (pCASL) being implemented on all 3 vendors (GE, Siemens, Philips), iii) multi‐PLD ASL, which allows for the generation of quantitative maps of cerebral blood‐flow (CBF) and arterial transit times (ATTs), iv) and isotropic 1mm3 resolution for 3D FLAIR. When ADNI4 began, product sequences that utilized artificial intelligence were not widely available and could not be adequately tested before the rollout of ADNI4.ConclusionsThe ADNI4 database will continue to help the neuroimaging community, not only extract valuable imaging biomarkers, but provide the data necessary to test the impact of advanced imaging strategies on diagnostic accuracy and disease sensitivity.

AbstractBackgroundWomen with suspected coronary microvascular dysfunction (CMD) may be at higher risk of experiencing cognitive decline due to cerebral small vessel disease, a known contributor to Alzheimer’s disease and related dementias (ADRD). A potential underlying mechanism that could accelerate this cognitive decline is the accumulation of brain tissue iron, which has been previously linked to changes in brain function potentially caused by oxidative stress and cell death. Therefore, we aim to elucidate whether a similar mechanism could affect women with suspected CMD by investigating the potential role of iron deposition on the brain’s functional organization and its effect on cognition using advanced magnetic resonance imaging (MRI).Material and MethodsTwenty‐seven women with suspected CMD [Age; median (range) = 54 (29‐76)], drawn from ongoing cohorts (3R01HL146158‐04S1,3U54AG065141‐04S1), underwent a 3T MRI protocol, including submillimeter T2* 3‐dimensional echo‐planar‐imaging for assessing iron deposition with high‐resolution quantitative susceptibility mapping (QSM) and resting‐state fMRI (rs‐fMRI). Iron content was quantified by total‐generalized‐variation based QSM analysis. Functional integrity was determined via graph theoretical approach (i.e., nodal degree). Cognitive assessment was also performed using the NIH Toolbox. Mediation analysis was conducted using Python Statsmodels.ResultsMost of the women with suspected CMD showed lower performance in processing speed, working memory, executive function, and attention (Figure 1A). We found a significant association between elevated iron levels in paracentral gyrus and lower functional connectivity in left hippocampus (p=0.005, adjusted‐r2=0.19) (Figure 1B). Elevated iron level in the paracentral gyrus showed an impact on cognitive performance in the domains of executive function and attention (p<0.0001, coefficient=531.09) as well as language functions and crystalized abilities (p=0.036, coefficient=362.45), mediated by functional connectivity in the left hippocampus (indirect effect on executive function / language: p = 0.034 / 0.038, coefficient = ‐254.54 /‐ 213.06) (Figure 1C).ConclusionsOur results suggest that changes in hippocampal functional organization are associated with cortical iron deposition and mediate its impact on cognitive performances. These changes may increase the risk of cognitive decline/ADRD or in women with suspected CMD. Future research in a larger cohort with a longitudinal design is necessary to validate and expand upon these findings.

AbstractBackgroundParkinson’s disease and dementia with Lewy bodies are characterized by abnormal iron deposition in the substantia nigra, which can be measured with quantitative susceptibility mapping (QSM) on MRI. However, neuropathologic validation of the increased QSM in the substantia nigra associated with Lewy body disease (LBD) is lacking. We compared substantia nigra QSM on antemortem MRI between patients with and without Lewy‐related pathology which was confirmed by autopsy in all cases.MethodWe studied cases with antemortem QSM who underwent autopsy from the Mayo Clinic Alzheimer’s Disease Research Center and Mayo Clinic Study of Aging (n=54). Immunohistochemistry was performed with rabbit NACP antibody against the amino acids 98‐115 of the α‐synuclein protein to detect Lewy‐related pathology. After neuropathologic evaluation, cases were classified as LBD‐present (n=13) if they had Lewy‐related pathology and LBD‐absent (n=42) if they did not have Lewy‐related pathology. Alzheimer’s disease co‐pathology was present in 9 of the LBD‐present cohort (70%). QSM was calculated for the whole substantia nigra and the two sub‐regions: pars compacta and pars reticulata. Non‐parametric Wilcoxon rank‐sum test was used to compare substantia nigra QSM values between LBD‐present and LBD‐absent cases. Area under the curve (AUC) analyses tested the accuracy of QSM to distinguish the two groups.ResultsLBD‐present group had higher QSM values in the substantia nigra than LBD‐absent group. Furthermore, sub‐regional analyses showed that the LBD‐present group had higher QSM in the substantia nigra pars compacta (p=0.008) but not in the pars reticulata than the LBD‐absent group (Figure 1). QSM of the substantia nigra pars compacta distinguished LBD‐present and LBD‐absent cases with good accuracy (AUC=0.74; p=0.006; Figure 2).ConclusionThis study provides neuropathologic insight into the relevance of QSM of substantia nigra pars compacta as an in‐vivo biomarker of autopsy‐confirmed LBD. These findings indicate that imaging evidence of abnormal iron deposition in the substantia nigra may serve as a biomarker of Lewy‐related pathology in patients with primary LBD (i.e., Parkinson disease, dementia with Lewy bodies) and patients with potential LBD co‐pathology (e.g., patients with Alzheimer disease).

AbstractBackgroundResearch subjects can potentially be re‐identified from de‐identified MRI, CT, and PET brain scans with up to 98% accuracy using Microsoft Azure’s cloud‐based commercial facial recognition software. This showed the need to “de‐face” publicly shared research brain scans. Subsequently, Microsoft has begun restricting its face recognition services, intending to prevent misuse. This study tests a variety of popular open‐source computer vision and facial recognition software packages to measure the re‐identification risk with only unrestricted free software.MethodThis study used brain MRI from Siemens 3T scanners and face photographs from 182 participants (ages 30‐90+) in the Mayo Clinic Study of Aging. Each participant had photos taken with an iPad, which were cropped loosely around the head and converted to black and white. A total of 81 renders (2D reconstruction images; Figure 1) were made from each 3D T2‐FLAIR MRI, simulating various camera and lighting positions. These face renders approximate black and white photos, allowing use with software packages developed for matching faces/features between photographs.Open‐source Python packages (OpenCV, DeepFace, face_recognition, scikit‐learn) and their included pre‐trained models (designed for photographs) were used to match participant photographs to the labelled library of MRI‐based face renders. A correct match was recorded when the top‐scoring render or set of renders automatically chosen by the algorithm was from the MRI of the correct participant.ResultFeature matching with ORB and SWIFT (both from OpenCV) produced no correct matches, despite a prior publication reporting moderate success. The best match rates (Figure 2) were 58‐59% accuracy using face_recognition or DeepFace packages with support vector machines (SVMs). Without SVMs, these packages performed modestly worse (51%‐55%).ConclusionWhile the highest match rates obtained by widely available open‐source packages (roughly 60%) are much lower than those of a limited‐access commercial product (Microsoft Azure, with 98%), they show that actors with only access to no‐cost readily available software could still re‐identify a research subject from a brain scan most of the time. This further highlights the need for image refacing software, such as mri_reface, to protect the privacy and identifies of research volunteers.

AbstractBackgroundPlasma Aβ42/40 and p‐tau217 can predict amyloid positivity in cross‐sectional studies. However, it is unclear how plasma biomarkers perform longitudinally, which is important to inform their utility in tracking disease progression. The goal of this study is to describe temporal evolutions of plasma Aβ42/40 and ptau217 ratio (p‐tau217r) measured via mass spectrometry, p‐tau217 measured via an immunoassay, and amyloid PET.MethodsWe included participants in the Mayo Clinic Study of Aging with amyloid PET (PiB) and plasma Aβ42/40 + ptau217r (mass spectrometry, C2N) and/or p‐tau217 (Lilly, MSD). We fit a joint non‐linear mixed effects model with Aβ42/40, p‐tau217r, p‐tau217 (Lilly), and amyloid PET as outcomes and age, sex, APOE ε4 carriership and education as covariates. The model included a per‐participant adjustment (time‐shift) for each biomarker indicating how much earlier or later in time the biomarker was estimated to progress relative to the average participant, a correlation (R) between adjustments for each pair of biomarkers, and the impact of covariates on each biomarker’s timing.ResultsThe study included 1459 participants, age 77 (10) years, 44% female, 82% cognitively unimpaired. Mean (SD) years of followup was 5.6(3.0) years for mass spectrometry plasma measures, 2.5(0.7) years for p‐tau217 (Lilly), and 4.6(3.3) for amyloid PET. Model fits are shown for each biomarker, with greater variability in serial measurements for plasma than PET (Figure 1). Individual adjustments between each of the plasma biomarkers and amyloid PET were highly correlated: p‐tau217r, R=0.73 (95%CI: 0.67, 0.78); p‐tau217 (Lilly), R=0.66 (0.62, 0.7); Aβ42/40, R=0.6 (0.52, 0.68) (Figure 2). The p‐tau217r and Aβ42/40 individual adjustments were modestly correlated, R=0.39 (0.28, 0.49). APOE ε4 carriership had the strongest covariate effect on all biomarkers, e.g. p‐tau217r progression 9.4 (6.7, 12) years earlier (Figure 3).ConclusionsPlasma Aβ42/40 and p‐tau217 measured with currently available assays may both be amenable to longitudinal modeling, although the degree of variability in Aβ42/40 over time may pose challenges. Findings suggest that both plasma Aβ42/40 and p‐tau217r may provide information regarding an individual’s timing of progression on amyloid PET; lower correlations with each other than amyloid PET suggests that each analyte may provide complimentary information.

AbstractBackgroundInexpensive, non‐invasive tests may improve the identification of persons at increased risk for cognitive decline and dementia. We compared impairment in odor identification and global cognition with neuro‐imaging biomarkers to predict cognitive decline and dementia in the population‐based Mayo Clinic Study of Aging (MCSA).MethodAt the 2008 assessment, 647 participants who were ≥ 55 years old with at least one follow‐up had the following procedures: modified Blessed Information‐Memory‐Concentration Test (BIMCT), 12‐item Brief Smell Identification Test (BSIT), brain magnetic resonance imaging (MRI), and Positron Emission Tomography (PET) amyloid imaging with 11C‐Pittsburgh compound B (11C‐PiB). A subsample (n=556) also had 18F‐fluorodeoxyglucose (18F‐FDG) PET scans. The utility of these baseline measures to predict cognitive decline (cognitively unimpaired to mild cognitive impairment [MCI] or dementia, or MCI to dementia) was examined during follow‐up (mean 8.1 SD 3.4 years). Transition to dementia was a secondary outcome.ResultAmong 647 participants without dementia (mean age 74.0 SD 8.1 years; 54.4% male) at baseline, 102 participants manifested cognitive decline and 34 participants transitioned to dementia. In Cox regression survival analyses for cognitive decline, PiB PET showed the strongest predictive utility (hazard ratio HR 5.05, 95% CI = 3.32‐7.69, p<.001). Impaired BSIT (HR 3.46, 95% CI = 2.34‐5.11, p<.001), impaired BIMCT (HR 3.63, 95% CI 2.46‐5.36, p<.001), MRI and FDG measures were also significant predictors. After adjusting for age, sex and education, these predictors remained significant with attenuated effects (PiB HR 3.89, 95% CI 2.54‐5.95, p<.001; BSIT HR 2.77, 95% CI 1.85‐4.14, p<.001; BIMCT HR 3.3, 95% CI 2.21‐4.95, p<.001). After adding these demographic variables in the model, the combination of BSIT and BIMCT showed strong predictive utility (C‐index=0.85), similar to PiB PET (C‐index=0.84). Combining all predictors showed a C‐index of 0.89. These measures showed similar but stronger results for dementia transition.ConclusionTests of global cognition and odor identification provide a brief, non‐invasive, inexpensive method comparable to PET amyloid imaging for identifying community‐dwelling persons likely to decline cognitively or transition to dementia. Other potential uses for this combination include identification of persons likely to benefit from disease‐modifying medications and determination of eligibility for prevention trials.

AbstractBackgroundLarge‐scale studies comparing sporadic early‐onset AD (EOAD, age<65) and late‐onset AD (LOAD, age≥65) are lacking. We compared amyloid‐PET outcomes (positivity rate and amyloid burden) between patients clinically diagnosed with sporadic EOAD vs LOAD, leveraging data from the Longitudinal Early‐Onset AD Study (LEADS) and the Alzheimer’s Disease Neuroimaging Initiative 3 (ADNI3).Method731 patients meeting the 2011 NIA‐AA criteria for AD dementia or MCI were included (505 early‐onset from LEADS, 226 late‐onset from ADNI3, Table 1). All participants underwent amyloid‐PET with [18F]Florbetaben or [18F]Florbetapir. Amyloid positivity was centrally determined by a process involving a visual read by a trained expert and PET‐only quantification; in case of a discrepancy, a read from an independent physician acted as a tiebreaker. Logistic regressions in each cohort examined relations between amyloid positivity and age, sex, MMSE and APOE4 genotype. Amyloid burden was independently quantified in Centiloids using an MRI‐based pipeline. Mean Centiloids in LEADS and ADNI were compared with two‐way ANOVA, for visually positive and visually negative scans.ResultAmyloid positivity rate was higher in LEADS (76%) than ADNI (64%, p<0.001, Figure 1A). Lower MMSE and APOE4 genotype increased odds of amyloid positivity in both cohorts, although the APOE4 effect was stronger in ADNI than LEADS (OR=10.1 versus 2.4, p=0.007, Table 2). Amyloid positivity was more common in females across cohorts, but this effect was only statistically significant in LEADS (Table 2). Centiloids were bimodally distributed in both cohorts, although the separation between positive and negative scans was more prominent in LEADS (Figure 1B). Visually positive scans had significantly higher Centiloids in LEADS than in ADNI, whereas no cohort difference was observed for visually negative scans (Figure 1C). Sensitivity analyses showed that this effect was driven by patients with MCI (CDR≤0.5; Figure 1D‐E).ConclusionThe lower amyloid positivity rate in ADNI might be due to AD‐mimicking pathologies being more common at an older age. The higher amyloid burden in early‐onset, amyloid‐positive patients could reflect younger patients being diagnosed later in the disease course compared to typical, late‐onset patients. Alternatively, younger patients might tolerate higher neuropathology burden due to higher brain reserve or fewer co‐pathologies.

AbstractBackgroundSeveral programs are available for automatically “de‐facing” brain images. These are designed to prevent the potential use of face imagery to re‐identify research participants. Previous works have compared available software and mri_reface is frequently among the top methods. The “Minimally Invasive DeFacing of MRI images” (MiDeFace) program was more recently added to FreeSurfer, but minimal validation of MiDeFace has been published.MethodWe ran mri_reface 0.3.3 and MiDeFace 7.3.2 on two datasets: A) 207 participants with face photographs and 3D T1‐weighted and 3D T2‐weighted‐FLAIR MRI from the Mayo Clinic Study of Aging (all unimpaired, Siemens); and B) 300 participants from ADNI3 with 3D T1‐weighted MRI (50 unimpaired + 50 with clinical AD, from each of 3 vendors). For dataset A, we tested the rate at which Microsoft Azure face recognition matched each participant’s photographs with the correct MRI, comparing unmodified images, those from mri_reface, and those from MiDeFace. For dataset B, we compared measured regional brain volume and cortical thickness from original vs. de‐faced images with SPM12, FreeSurfer 7.4.1, and the FSL‐UK Biobank pipeline. For both datasets, images were visually rated to assess removal of the face and retention of brain tissue.ResultAutomated face recognition match rates were lower with mri_reface (17/207 8.2%) than with MiDeFace (24/207 11.6%), indicating stronger identity protection with mri_reface, but both were greatly reduced vs. unmodified images (203/207 98.1%). Example images with both programs are shown in Figure 1. From visual ratings (Table 1), rates of complete success (modification of the entire face while retaining the entire brain) were much higher with mri_reface, but the great majority of failures from MiDeFace were subtle and occurred in relatively less recognizable face regions. The effects of both programs on downstream imaging measurements (Figure 2) were small and very comparable, but MiDeFace was favored mildly for SPM12 and for FSL, while mri_reface was more favored for FreeSurfer.ConclusionAltogether, mri_reface more reliably removed the complete face, leading to smaller rates of potential re‐identification (8.2% vs 11.6%). Effects on downstream image measurements were small and comparable with both methods.

Abstract Background The Mayo Clinic Study of Aging (MCSA) is a longitudinal, population‐based study of residents of Olmsted County, Minnesota, USA. MCSA is releasing de‐identified clinical and imaging data on GAAIN.org to benefit the research community. Method We included longitudinal clinical data from all participants of the Mayo Clinic Study of Aging 30‐90 years of age (average 70.0y) through the first 15 years of the study. Clinical data includes age, sex, self‐reported race/ethnicity, APoE4 allele status, cognitive impairment status (normal, MCI, dementia, or other), height, weight, blood pressure, multi‐domain neuropsychological scores, neuroimaging summary measurements, medications, cardiovascular risk factors, social activity, sleep, mood/anxiety, functional measures, and more. For our initial release of imaging data, we selected the first imaging timepoint acquired on 3T GE MRI scanners and amyloid (PiB) PET during the same visit, from all available imaging participants 50‐90 years of age (average 70.7y). Currently, we included 3D T1‐weighted (MPRAGE) MRI (1x1x1.2mm 3 ), T2‐weighted FLAIR MRI (0.85x0.85x3.6mm 3 ), diffusion MRI (2.7mm resolution with 41 directions at b=1000 and 5 b=0), and numeric cortical global SUVR and Centiloid values from PiB PET scans at 40‐60 minutes post‐injection. All images are released in DICOM format and thoroughly de‐identified using CTP while ensuring preservation of necessary fields for analyses. T1‐weighted and T2‐FLAIR MRI were also de‐faced (identifiable face imagery was removed and replaced with an average) using mri_reface version 0.3.3 to further protect participants’ privacy, and all de‐faced images were visually inspected by a trained data scientist for quality assurance. Result The first phase of our public data release includes clinical data from 5925 unique participants from the Mayo Clinic Study of Aging (MCSA), each ranging from 1‐12 visits at roughly 15‐month intervals, and three MRI sequences (T1‐w, T2‐w‐FLAIR, and diffusion) from 1802 unique participants. Demographic summaries are given in Table 1. Conclusion This large, richly characterized, de‐identified clinical and imaging dataset is available to the research community at https://www.gaaindata.org/partner/MCSA , and it is suitable for a wide range of research uses. Additional data will be released over time, including de‐faced amyloid PET images.

AbstractBackgroundSleep’s crucial role in maintaining brain health is increasingly recognized, particularly due to the rising prevalence of neurodegenerative diseases. It not only supports cognitive function but also aids in clearing brain metabolic waste through cerebrospinal fluid (CSF) dynamics. During sleep, especially in the non‐rapid eye movement (NREM) phase, CSF flow increases, essential for removing neurotoxic substances like amyloid‐beta proteins. This study explores the link between sleep respiratory patterns and CSF flow promotion.MethodElectroencephalography (EEG), and functional magnetic resonance imaging (fMRI) were simultaneously acquired during sleep from Gu, et al. (n = 29) (Gu et al. 2022). Respiration, measured via a respiratory belt, calculated respiratory volume (RV) as the standard deviation within a 5 second sliding window. EEG data processed delta band power (1‐4Hz) averaged across channels. Parcellated fMRI data using the brain template followed by the calculation of the averaged gray matter (GM) blood‐oxygen‐level‐dependent (BOLD) signal using the GM mask. CSF inflow was manually extracted from the fMRI’s bottom slice at the foramen magnum level. Subsequently, all signals were temporally aligned to the peak of the CSF inflow signal.ResultAt the time of CSF inflow (time = 0 sec. in the Figure 1A‐D), we observed an earlier increase in RV and EEG delta power, followed by changes in the GM BOLD signal (Figure 1). EEG and RV changes preceded the BOLD signal changes, which, in turn, preceded changes in CSF flow. Sensitivity to detect RV involvement during MRI varied with the placement of the respiratory belt, being least sensitive on the chest and more on the abdomen.ConclusionThese findings raise an interesting question on the role respiratory patterns during sleep, particularly in the NREM phase. Speculatively, RV change may influence CSF circulation during NREM sleep (Figure 1E). This enhancement in CSF flow is crucial for the clearance of metabolic waste from the brain, potentially reducing the risk of neurodegenerative diseases. Our findings indicate that respiratory volume may serve as a significant marker for CSF circulation during sleep.