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607 citation(s) found for "By, Samantha".

Simultaneous Drug Targeting of the Promoter MYC G-Quadruplex and BCL2 i-Motif in Diffuse Large B-Cell Lymphoma Delays Tumor Growth
Kendrick, Samantha , Murányi, Andrea , Hurley, Laurence H. , Hurley, Laurence H , Gokhale, Vijay M. , Rimsza, Lisa M.

Journal of Medicinal Chemistry | June 12, 2017 | Volume: 60 | Issue: 15 | Pages: 6587-6597

10.1021/acs.jmedchem.7b00298 | PMID 28605593 Get It

Habitual exercise levels are associated with cerebral amyloid load in presymptomatic autosomal dominant Alzheimer's disease
Brown, Belinda M. , Sohrabi, Hamid R. , Taddei, Kevin , Gardener, Samantha L. , Rainey‐Smith, Stephanie R. , Peiffer, Jeremiah J. , Xiong, Chengjie , Fagan, Anne M. , Benzinger, Tammie L.S. , Buckles, Virginia, Erickson, Kirk I. , Clarnette, Roger, Shah, Tejal , Masters, Colin L. , Weiner, Michael W. , Cairns, Nigel J., Rossor, Martin N. , Graff‐Radford, Neill R. , Salloway, Stephen , Vöglein, Jonathan , Laske, Christoph , Noble, James M. , Schofield, Peter R. , Bateman, Randall J. , Morris, John C. , Martins, Ralph N. , Schofield, Peter R , Bateman, Randall J , Masters, Colin L , Vöglein, Jonathan , Benzinger, Tammie L S , Morris, John C , Noble, James M

Alzheimer's & Dementia | May 11, 2017 | Volume: 13 | Issue: 11 | Pages: 1197-1206

10.1016/j.jalz.2017.03.008 | PMID 28501451 Get It

AbstractIntroductionThe objective of this study was to evaluate the relationship between self‐reported exercise levels and Alzheimer's disease (AD) biomarkers, in a cohort of autosomal dominant AD mutation carriers.MethodsIn 139 presymptomatic mutation carriers from the Dominantly Inherited Alzheimer Network, the relationship between self‐reported exercise levels and brain amyloid load, cerebrospinal fluid (CSF) Aβ42, and CSF tau levels was evaluated using linear regression.ResultsNo differences in brain amyloid load, CSF Aβ42, or CSF tau were observed between low and high exercise groups. Nevertheless, when examining only those already accumulating AD pathology (i.e., amyloid positive), low exercisers had higher mean levels of brain amyloid than high exercisers. Furthermore, the interaction between exercise and estimated years from expected symptom onset was a significant predictor of brain amyloid levels.DiscussionOur findings indicate a relationship exists between self‐reported exercise levels and brain amyloid in autosomal dominant AD mutation carriers.
Pittsburgh compound-B PET white matter imaging and cognitive function in late multiple sclerosis
Zeydan, Burcu , Lowe, Val J. , Przybelski, Scott A. , Tosakulwong, Nirubol , Zuk, Samantha M., Senjem, Matthew L. , Gunter, Jeffrey L. , Roberts, Rosebud O., Mielke, Michelle M. , Benarroch, Eduardo E. , Rodriguez, Moses , Lesnick, Timothy G. , Petersen, Ronald C. , Jack, Clifford R. , Kantarci, Kejal , Kantarci, Orhun H. , Schwarz, Christopher G. , Machulda, Mary M. , Knopman, David S. , Jack, Clifford R , Mielke, Michelle M , Senjem, Matthew L , Kantarci, Kejal , Rodriguez, Moses , Zeydan, Burcu

Multiple Sclerosis Journal | May 5, 2017 | Volume: 24 | Issue: 6 | Pages: 739-749

10.1177/1352458517707346 | PMID 28474977 Get It

Background: There is growing interest in white matter (WM) imaging with positron emission tomography (PET). Objectives: We studied the association of cognitive function in late multiple sclerosis (MS) with cortical and WM Pittsburgh compound-B PET (PiB-PET) binding. Methods: In the population-based Mayo Clinic Study of Aging, 24 of 4869 participants had MS (12 underwent PiB-PET). Controls were age and sex matched (5:1). We used automated or semi-automated processing for quantitative image analyses and conditional logistic regression for group differences. Results: MS patients had lower memory ( p = 0.03) and language ( p = 0.02) performance; smaller thalamic volumes ( p = 0.003); and thinner temporal ( p = 0.001) and frontal ( p = 0.045) cortices on magnetic resonance imaging (MRI) than controls. There was no difference in global cortical PiB standardized uptake value ratios between MS and controls ( p = 0.35). PiB uptake was lower in areas of WM hyperintensities compared to normal-appearing white matter (NAWM) in MS ( p = 0.0002). Reduced PiB uptake in both the areas of WM hyperintensities ( r = 0.65; p = 0.02) and NAWM ( r = 0.69; p = 0.01) was associated with decreased visuospatial performance in MS. Conclusion: PiB uptake in the cortex in late MS is not different from normal age-matched controls. PiB uptake in the WM in late MS may be a marker of the large network structures’ integrity such as those involved in visuospatial performance.
Randomized Trial of Pleural Fluid Drainage Frequency in Patients with Malignant Pleural Effusions. The ASAP Trial
Wahidi, Momen M. , Reddy, Chakravarthy, Yarmus, Lonny , Feller‐Kopman, David , Musani, Ali I., Shepherd, Ray W., Bechara, Rabih , Lamb, Carla, Shofer, Scott , Mahmood, Kamran , Michaud, Gaëtane , Puchalski, Jonathan , Rafeq, Samaan , Cattaneo, Stephen M., Mullon, John J., Leh, Steven, Mayse, Martin L., Thomas, Samantha , Peterson, Bercedis L., Light, Richard W., Mullon, John, Lee, Hans C.

American Journal of Respiratory and Critical Care Medicine | March 6, 2017 | Volume: 195 | Issue: 8 | Pages: 1050-1057

10.1164/rccm.201607-1404oc | PMID 27898215 Get It

Abstract Rationale Patients with malignant pleural effusions have significant dyspnea and shortened life expectancy. Indwelling pleural catheters allow patients to drain pleural fluid at home and can lead to autopleurodesis. The optimal drainage frequency to achieve autopleurodesis and freedom from catheter has not been determined. Objectives To determine whether an aggressive daily drainage strategy is superior to the current standard every other day drainage of pleural fluid in achieving autopleurodesis. Methods Patients were randomized to either an aggressive drainage (daily drainage; n = 73) or standard drainage (every other day drainage; n = 76) of pleural fluid via a tunneled pleural catheter. Measurements and Main Results The primary outcome was the incidence of autopleurodesis following the placement of the indwelling pleural catheters. The rate of autopleurodesis, defined as complete or partial response based on symptomatic and radiographic changes, was greater in the aggressive drainage arm than the standard drainage arm (47% vs. 24%, respectively; P = 0.003). Median time to autopleurodesis was shorter in the aggressive arm (54 d; 95% confidence interval, 34–83) as compared with the standard arm (90 d; 95% confidence interval, 70 to nonestimable). Rate of adverse events, quality of life, and patient satisfaction were not significantly different between the two arms. Conclusions Among patients with malignant pleural effusion, daily drainage of pleural fluid via an indwelling pleural catheter led to a higher rate of autopleurodesis and faster time to liberty from catheter. Clinical trial registered with www.clinicaltrials.gov (NCT 00978939).
NRG Oncology RTOG 0415: A randomized phase III non-inferiority study comparing two fractionation schedules in patients with low-risk prostate cancer.
Lee, W. Robert , Dignam, James J., Amin, Mahul B. , Low, Daniel J. , Shah, Amit B. , D’Souza, David , Michalski, Jeff M. , Dayes, Ian S. , Seaward, Samantha A. , Hall, William A. , Pisansky, Thomas M. , Faria, Sergio , Chen, Yuhchyau , Bruner, Deborah Watkins , Swanson, Gregory P. , Seaward, Samantha A , Nguyen, Paul L. , Koontz, Bridget F. , Paulus, Rebecca , Sandler, Howard M. , Dayes, Ian S

Journal of Clinical Oncology | February 24, 2017 | Volume: 34 | Issue: 2_suppl | Pages: 1-1

10.1200/jco.2016.34.2_suppl.1 Get It

1 Background: To determine whether the efficacy of a hypofractionated (H) schedule is no worse than a conventional (C) schedule in men with low-risk prostate cancer. Methods: From April 2006 to December 2009, one thousand one hundred fifteen men with low-risk prostate cancer (clinical stage T1-2a, Gleason ≤ 6, PSA < 10) were randomly assigned 1:1 to a conventional (C) schedule (73.8 Gy in 41 fractions over 8.2 weeks) or to a hypofractionated (H) schedule (70 Gy in 28 fractions over 5.6 weeks). The trial was designed to establish with 90% power and alpha = 0.05 that (H) results in 5-year disease-free survival (DFS) that is not lower than (C) by more than 7% (hazard ratio (HR) < 1.52). Secondary endpoints include freedom from biochemical recurrence (FFBR) and overall survival. At the third planned interim analysis (July 2015), the NRG Oncology Data Monitoring Committee recommended that the results of the trial be reported. Results: One thousand one hundred and one protocol eligible men were randomized: 547 to C and 554 to H. Median follow-up is 5.9 years. Baseline characteristics are not different according to treatment arm. At the time of analysis 185 DFS events have been observed; 99 in the C arm and 86 in the H arm. The estimated 7-year disease-free survival is 75.6% (95% CI 70.3, 80.1) in the C arm and 81.8% (77.5, 85.3) in the H arm. The DFS HR (C/H) is 0.85 (0.64, 1.14). Comparison of biochemical recurrence (HR = 0.77, (0.51, 1.17)) and overall survival (HR = 0.95, (0.65, 1.41)) also met protocol non-inferiority criteria. Grade ≥ 3 GI toxicity is 3.0% (C) vs. 4.6% (H), Relative risk (RR) for H vs. C 1.53, (95% CI 0.86, 2.83); grade ≥ 3 GU toxicity is 4.5% (C) vs. 6.4% (H), RR = 1.43 (0.86,2.37). Conclusions: In men with low-risk prostate cancer, 70 Gy in 28 fractions over 5.6 weeks is non-inferior to 73.8 Gy in 41 fractions over 8.2 weeks. Clinical trial information: NCT00331773.
Physical activity patterns and clusters in 1001 patients with COPD
Mesquita, Rafael , Spina, Gabriele , Pitta, Fábio , Donaire-González, David , Deering, Brenda, Patel, Mehul S. , Gestel, Arnoldus JR van, Zogg, Stefanie, Abascal-Bolado, Beatriz , Vagaggini, Barbara, Jenkins, Sue, Romme, Elisabeth APM, Kon, Samantha S.C. , Albert, Paul , Waschki, Benjamin , Shrikrishna, Dinesh , Singh, Sally , Hopkinson, Nicholas S , Miedinger, David , Benzo, Roberto P. , Maltais, François , Paggiaro, Pierluigi, McKeough, Zoe , Polkey, Michael I. , Hill, Kylie , Man, William D‐C , Clarenbach, Christian F. , Hernandes, Nídia Aparecida , Savi, Daniela , Wootton, Sally , Furlanetto, Karina Couto , Ng, Li Whye Cindy, Vaes, Anouk W, Jenkins, Christine , Eastwood, Peter R. , Jarreta, Diana, Kirsten, Anne, Brooks, Dina , Hillman, David R. , Sant’Anna, Thaís , Meijer, Kenneth , Dürr, Selina , Rutten, Erica P.A., Kohler, Malcolm , Probst, Vanessa S. , Tal‐Singer, Ruth , Gil, Esther García, Brinker, Albertus C. den , Leuppi, Jörg D. , Costello, Richard W. , Gramm, Marco, Goldstein, Roger , Groenen, Miriam , Magnussen, H, Wouters, Emiel F.�M. , ZuWallack, Richard , Watz, Henrik, Spruit, Martijn A. , Mitchell, Katy , Alison, Jennifer Ailsey , Gagnon, Philippe , Vagaggini, Barbara, García‐Aymerich, Judith , Paggiaro, Pierluigi , Vaes, Anouk W, Kirsten, Anne‐Marie , Calverley, Peter M.A. , Smeenk, Frank W.J.M. , Amft, Oliver , Costello, Richard W , Tal-Singer, Ruth

Chronic Respiratory Disease | February 24, 2017 | Volume: 14 | Issue: 3 | Pages: 256-269

10.1177/1479972316687207 | PMID 28774199 Get It

We described physical activity measures and hourly patterns in patients with chronic obstructive pulmonary disease (COPD) after stratification for generic and COPD-specific characteristics and, based on multiple physical activity measures, we identified clusters of patients. In total, 1001 patients with COPD (65% men; age, 67 years; forced expiratory volume in the first second [FEV 1 ], 49% predicted) were studied cross-sectionally. Demographics, anthropometrics, lung function and clinical data were assessed. Daily physical activity measures and hourly patterns were analysed based on data from a multisensor armband. Principal component analysis (PCA) and cluster analysis were applied to physical activity measures to identify clusters. Age, body mass index (BMI), dyspnoea grade and ADO index (including age, dyspnoea and airflow obstruction) were associated with physical activity measures and hourly patterns. Five clusters were identified based on three PCA components, which accounted for 60% of variance of the data. Importantly, couch potatoes (i.e. the most inactive cluster) were characterised by higher BMI, lower FEV 1 , worse dyspnoea and higher ADO index compared to other clusters ( p < 0.05 for all). Daily physical activity measures and hourly patterns are heterogeneous in COPD. Clusters of patients were identified solely based on physical activity data. These findings may be useful to develop interventions aiming to promote physical activity in COPD.
Potential epigenetic biomarkers of obesity-related insulin resistance in human whole-blood
Day, Samantha E. , Coletta, Richard L., Kim, Joon Young , Campbell, Latoya E., Benjamin, Tonya R., Roust, Lori R., Filippis, Elena A. De, Mandarino, Lawrence J. , De Filippis, Elena A, Garcia, Luis Alberto , Coletta, Dawn K.

Epigenetics | January 20, 2017 | Volume: 12 | Issue: 4 | Pages: 254-263

10.1080/15592294.2017.1281501 | PMID 28106509 Get It

A candidate regulatory variant at the TREM gene cluster associates with decreased Alzheimer's disease risk and increased TREML1 and TREM2 brain gene expression
Carrasquillo, Minerva M., Allen, Mariet , Burgess, Jeremy D. , Wang, Xue , Strickland, Samantha L. , Aryal, Shivani , Siuda, Joanna , Kachadoorian, Michaela, Medway, Christopher, Younkin, Curtis, Nair, Asha, Chanana, Pritha , Serie, Daniel, Nguyen, Thuy , Lincoln, Sarah, Malphrus, Kimberly G., Morgan, Kevin , Golde, Todd E. , Price, Nathan D. , White, Charles C. , Jager, Philip L. De , Bennett, David A. , Asmann, Yan W. , Petersen, Ronald , Graff‐Radford, Neill R., Younkin, Steven G., Ertekin‐Taner, Nilüfer , Kachadoorian, Michaela L, Younkin, Curtis S, Crook, Julia E. , Bennett, David A. , Carrasquillo, Minerva M. , Siuda, Joanna S. , Wang, Chen , Graff‐Radford, Neill R., Dickson, Dennis W. , Price, Nathan D

Alzheimer's & Dementia | December 8, 2016 | Volume: 13 | Issue: 6 | Pages: 663-673

10.1016/j.jalz.2016.10.005 | PMID 27939925 Get It

AbstractIntroductionWe hypothesized that common Alzheimer's disease (AD)‐associated variants within the triggering receptor expressed on myeloid (TREM) gene cluster influence disease through gene expression.MethodsExpression microarrays on temporal cortex and cerebellum from ∼400 neuropathologically diagnosed subjects and two independent RNAseq replication cohorts were used for expression quantitative trait locus analysis.ResultsA variant within a DNase hypersensitive site 5′ of TREM2, rs9357347‐C, associates with reduced AD risk and increased TREML1 and TREM2 levels (uncorrected P = 6.3 × 10−3 and 4.6 × 10−2, respectively). Meta‐analysis on expression quantitative trait locus results from three independent data sets (n = 1006) confirmed these associations (uncorrected P = 3.4 × 10−2 and 3.5 × 10−3, Bonferroni‐corrected P = 6.7 × 10−2 and 7.1 × 10−3, respectively).DiscussionOur findings point to rs9357347 as a functional regulatory variant that contributes to a protective effect observed at the TREM locus in the International Genomics of Alzheimer's Project genome‐wide association study meta‐analysis and suggest concomitant increase in TREML1 and TREM2 brain levels as a potential mechanism for protection from AD.
TAZ activation drives fibroblast spheroid growth, expression of profibrotic paracrine signals, and context-dependent ECM gene expression
Jorgenson, Amy J., Choi, Kyoung Moo , Sicard, Delphine , Smith, Karry M. J. , Hiemer, Samantha E. , Varelas, Xaralabos , Tschumperlin, Daniel J. , Varelas, Xaralabos

American Journal of Physiology-Cell Physiology | November 23, 2016 | Volume: 312 | Issue: 3 | Pages: C277-C285

10.1152/ajpcell.00205.2016 | PMID 27881410 Get It

Recent studies have implicated the Hippo pathway and its transcriptional effectors YAP and TAZ as necessary for fibroblast activation and tissue fibrosis. To test the specific and sufficient roles for TAZ in driving autonomous fibroblast activation, we cultured NIH3T3 fibroblasts expressing a doxycycline-inducible nuclear-localized mutant of TAZ (TAZ4SA) in scaffold-free 3D hanging drop spheroids, or on matrices of specified mechanical rigidity. Control NIH3T3 fibroblasts formed spheroids in hanging drop culture that remained stable and neither increased nor decreased in size significantly over 15 days. In contrast, TAZ4SA-transduced fibroblasts grew robustly in spheroid culture, and expressed enhanced levels of genes encoding profibrotic soluble factors connective tissue growth factor (CTGF), endothelin-1 (Et-1), and plasminogen activator inhibitor 1 (PAI-1). However, TAZ4SA expression was unable to enhance expression of extracellular matrix (ECM)-encoding genes Col1a1, Col1a2, Col3a1, or Fn1 in spheroid culture. Micromechanical testing indicated that spheroids composed of either control or TAZ4SA-expressing cells were highly compliant and indistinguishable in mechanical properties. In fibroblasts cultured on 2D matrices of compliance similar to spheroids, TAZ4SA expression was able to enhance contractile force generation, but was unable to enhance ECM gene expression. In contrast, culture on stiff hydrogels potentiated TAZ4SA enhancement of ECM expression. TAZ4SA enhancement of Col1a1 expression on soft matrices was potentiated by TGF-β1, while on stiff matrices it was abrogated by inhibition of myocardin-related transcription factor, demonstrating context-dependent crosstalk of TAZ with these pathways. These findings demonstrate sufficiency of TAZ activation for driving fibroblast proliferation, contraction, and soluble profibrotic factor expression, and mechanical context-dependent crosstalk of TAZ with other pathways in regulating Col1a1 expression.