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818 citation(s) found for "Kääb, Stefan".

Haplotype structure defines effects of common DPYD variants c.85T > C (rs1801265) and c.496A > G (rs2297595) on dihydropyrimidine dehydrogenase activity: Implication for 5‐fluorouracil toxicity
Hamzic, Seid , Schärer, Dominic, Meulendijks, Didier , Nakas, Christos T. , Diasio, Robert B. , Wehrli, Marc , Schürch, Stefan , Amstutz, Ursula , Largiadèr, Carlo R. , Offer, Steven M. , Nakas, Christos , Diasio, Robert B , Largiadèr, Carlo R , Fontana, Stefano

British Journal of Clinical Pharmacology | January 25, 2021 | Volume: 87 | Issue: 8 | Pages: 3234-3243

10.1111/bcp.14742 | PMID 33491253 Get It

AimsThe aim of this study was to identify risk variants and haplotypes that impair dihydropyrimidine dehydrogenase (DPD) activity and are, therefore, candidate risk variants for severe toxicity to 5‐fluorouracil (5‐FU) chemotherapy.MethodsPlasma dihydrouracil/uracil (UH2/U) ratios were measured as a population marker for DPD activity in a total of 1382 subjects from 4 independent studies. Genotype and haplotype correlations with UH2/U ratios were assessed.ResultsSignificantly lower UH2/U ratios (panova < 2 × 10−16) were observed in carriers of the 4 well‐studied 5‐FU toxicity risk variants with mean differences (MD) of −43.7% for DPYD c.1905 + 1G > A (rs3918290), −46.0% for DPYD c.1679T > G (rs55886062), −37.1%, for DPYD c.2846A > T (rs67376798), and −13.2% for DPYD c.1129‐5923C > G (rs75017182). An additional variant, DPYD c.496A > G (rs2297595), was also associated with lower UH2/U ratios (P < .0001, MD: −12.6%). A haplotype analysis was performed for variants in linkage disequilibrium with c.496A > G, which consisted of the common variant c.85T > C (rs1801265) and the risk variant c.1129‐5923C > G. Both haplotypes carrying c.496A > G were associated with decreased UH2/U ratios (H3, P = .003, MD: −9.6%; H5, P = .002, MD: −16.9%). A haplotype carrying only the variant c.85T > C (H2) was associated with elevated ratios (P = .004, MD: +8.6%).ConclusionsBased on our data, DPYD‐c.496A > G is a strong candidate risk allele for 5‐FU toxicity. Our data suggest that DPYD‐c.85T > C might be protective; however, the deleterious impacts of the linked alleles c.496A > G and c.1129‐5923C > G likely limit this effect in patients. The possible protective effect of c.85T > C and linkage disequilibrium with c.496A > G and c.1129‐5923C > G may have hampered prior association studies and should be considered in future clinical studies.
Placental growth factor promotes tumour desmoplasia and treatment resistance in intrahepatic cholangiocarcinoma
Aoki, Shuichi , Inoue, Koetsu , Klein, Sebastian , Halvorsen, Stefan , Matsui, Aya , Nikmaneshi, Mohammad R. , Hato, Tai , Chen, Xianfeng , Nia, Hadi T. , Chen, Ivy, Schanne, Daniel H. , Mamessier, Émilie , Shigeta, Kohei , Ramjiawan, Rakesh R. , Schmidt, Tyge CE , Iwasaki, M, Hong, Theodore S. , Plum, Patrick Sven , Dima, Simona , Popescu, Irinel , Bardeesy, Nabeel, Munn, Lance L. , Sassi, Slim , Jain, Rakesh K., Zhu, Andrew X. , Duda, Dan G. , Shigeta, Kohei , Yau, Thomas , Duda, Dan G , Chen, Jiang , Kitahara, Shuji , Kawakubo, Kazumichi , Kikuchi, Hiroto , Iwasaki, Masaaki, Quaas, Alexander , Borad, Mitesh J. , Jain, Rakesh K.

Gut | January 12, 2021 | Volume: 71 | Issue: 1 | Pages: 185-193

10.1136/gutjnl-2020-322493 | PMID 33431577 Get It

Objective Intrahepatic cholangiocarcinoma (ICC)—a rare liver malignancy with limited therapeutic options—is characterised by aggressive progression, desmoplasia and vascular abnormalities. The aim of this study was to determine the role of placental growth factor (PlGF) in ICC progression. Design We evaluated the expression of PlGF in specimens from ICC patients and assessed the therapeutic effect of genetic or pharmacologic inhibition of PlGF in orthotopically grafted ICC mouse models. We evaluated the impact of PlGF stimulation or blockade in ICC cells and cancer-associated fibroblasts (CAFs) using in vitro 3-D coculture systems. Results PlGF levels were elevated in human ICC stromal cells and circulating blood plasma and were associated with disease progression. Single-cell RNA sequencing showed that the major impact of PlGF blockade in mice was enrichment of quiescent CAFs, characterised by high gene transcription levels related to the Akt pathway, glycolysis and hypoxia signalling. PlGF blockade suppressed Akt phosphorylation and myofibroblast activation in ICC-derived CAFs. PlGF blockade also reduced desmoplasia and tissue stiffness, which resulted in reopening of collapsed tumour vessels and improved blood perfusion, while reducing ICC cell invasion. Moreover, PlGF blockade enhanced the efficacy of standard chemotherapy in mice-bearing ICC. Conclusion PlGF blockade leads to a reduction in intratumorous hypoxia and metastatic dissemination, enhanced chemotherapy sensitivity and increased survival in mice-bearing aggressive ICC.
Clarification on the definition of complete haematologic response in light-chain (AL) amyloidosis
Schönland, Stefan , Kumar, Shaji , Wechalekar, Ashutosh , Milani, Paolo , Ando, Yukio, Westermark, Per , Merlini, Giampaolo , Merlini, Giampaolo , Milani, Paolo , Schönland, Stefan , Palladini, Giovanni , Sanchorawala, Vaishali , Wechalekar, Ashutosh D. , Hegenbart, Ute , Ando, Yukio, Dispenzieri, Angela

Amyloid | January 7, 2021 | Volume: 28 | Issue: 1 | Pages: 1-2

10.1080/13506129.2020.1868810 | PMID 33410355 Get It

Outcomes by Clinical and Molecular Features in Children With Medulloblastoma Treated With Risk-Adapted Therapy: Results of an International Phase III Trial (SJMB03)
Gajjar, Amar , Robinson, Giles , Smith, Kyle , Lin, Tong , Merchant, Thomas E. , Chintagumpala, Murali , Mahajan, Anita , Su, Jack , Bouffet, Éric , Bartels, Ute , Schechter, Tal , Robertson, Thomas , Nicholls, Wayne , Gururangan, Sridharan , Schroeder, Kristin , Sullivan, Michael , Wheeler, Greg, Hansford, Jordan R. , Kellie, Stewart J., McCowage, Geoffrey , Fisher, Michael J. , Krasin, Matthew J. , Stewart, Clinton F. , Buchhalter, Ivo , Tatevossian, Ruth , Orr, Brent A. , Neale, Geoffrey , Klimo, Paul , Boop, Frederick A. , Pfister, Stefan M. , Gilbertson, Richard J. , Onar‐Thomas, Arzu , Ellison, David W. , Robinson, Giles W , Hassall, Tim , Gururangan, Sridharan , Schroeder, Kristin , Sullivan, Michael , Hansford, Jordan R , Krasin, Matthew J , Buchhalter, Ivo , Tatevossian, Ruth G , Orr, Brent A , Neale, Geoff , Pfister, Stefan M , Northcott, Paul A , Merchant, Thomas E , Bouffet, Eric , Bartels, Ute , Cohn, Richard Jules , Broniscer, Alberto , Srinivasan, Ashok

Journal of Clinical Oncology | January 6, 2021 | Volume: 39 | Issue: 7 | Pages: 822-835

10.1200/jco.20.01372 | PMID 33405951 Get It

PURPOSE SJMB03 (ClinicalTrials.gov identifier: NCT00085202 ) was a phase III risk-adapted trial that aimed to determine the frequency and clinical significance of biological variants and genetic alterations in medulloblastoma. PATIENTS AND METHODS Patients 3-21 years old were stratified into average-risk and high-risk treatment groups based on metastatic status and extent of resection. Medulloblastomas were molecularly classified into subgroups (Wingless [WNT], Sonic Hedgehog [SHH], group 3, and group 4) and subtypes based on DNA methylation profiles and overlaid with gene mutations from next-generation sequencing. Coprimary study end points were (1) to assess the relationship between ERBB2 protein expression in tumors and progression-free survival (PFS), and (2) to estimate the frequency of mutations associated with WNT and SHH tumors. Clinical and molecular risk factors were evaluated, and the most robust were used to model new risk-classification categories. RESULTS Three hundred thirty eligible patients with medulloblastoma were enrolled. Five-year PFS was 83.2% (95% CI, 78.4 to 88.2) for average-risk patients (n = 227) and 58.7% (95% CI, 49.8 to 69.1) for high-risk patients (n = 103). No association was found between ERBB2 status and PFS in the overall cohort ( P = .74) or when patients were stratified by clinical risk ( P = .71). Mutations in CTNNB1 (96%), DDX3X (37%), and SMARCA4 (24%) were most common in WNT tumors and PTCH1 (38%), TP53 (21%), and DDX3X (19%) in SHH tumors. Methylome profiling classified 53 WNT (17.4%), 48 SHH (15.7%), 65 group 3 (21.3%), and 139 group 4 (45.6%) tumors. A comprehensive clinicomolecular risk factor analysis identified three low-risk groups (WNT, low-risk SHH, and low-risk combined groups 3 and 4) with excellent (5-year PFS > 90%) and two very high-risk groups (high-risk SHH and high-risk combined groups 3 and 4) with poor survival (5-year PFS < 60%). CONCLUSION These results establish a new risk stratification for future medulloblastoma trials.
Influence of age and shock severity on short-term survival in patients with cardiogenic shock
Jentzer, Jacob C. , Holmes, David R. , Dabboura, Salim , Anavekar, Nandan S., Kirchhof, Paulus , Barsness, Gregory W. , Blankenberg, Stefan , Bell, Malcolm R. , Westermann, Dirk , Kirchhof, Paulus , Jentzer, Jacob C , Westermann, Dirk , Blankenberg, Stefan , Schrage, Benedikt

European Heart Journal. Acute Cardiovascular Care | January 1, 2021 | Volume: 10 | Issue: 6 | Pages: 604-612

10.1093/ehjacc/zuaa035 | PMID 33580778 Get It

AbstractAimsCardiogenic shock (CS) is associated with poor outcomes in older patients, but it remains unclear if this is due to higher shock severity. We sought to determine the associations between age and shock severity on mortality among patients with CS.Methods and resultsPatients with a diagnosis of CS from Mayo Clinic (2007–15) and University Clinic Hamburg (2009–17) were subdivided by age. Shock severity was graded using the Society for Cardiovascular Angiography and Intervention (SCAI) shock stages. Predictors of 30-day survival were determined using Cox proportional-hazards analysis. We included 1749 patients (934 from Mayo Clinic and 815 from University Clinic Hamburg), with a mean age of 67.6 ± 14.6 years, including 33.6% females. Acute coronary syndrome was the cause of CS in 54.0%. The distribution of SCAI shock stages was 24.1%; C, 28.0%; D, 33.2%; and E, 14.8%. Older patients had similar overall shock severity, more co-morbidities, worse kidney function, and decreased use of mechanical circulatory support compared to younger patients. Overall 30-day survival was 53.3% and progressively decreased as age or SCAI shock stage increased, with a clear gradient towards lower 30-day survival as a function of increasing age and SCAI shock stage. Progressively older age groups had incrementally lower adjusted 30-day survival than patients aged &lt;50 years.ConclusionOlder patients with CS have lower short-term survival, despite similar shock severity, with a high risk of death in older patients with more severe shock. Further research is needed to determine the optimal treatment strategies for older CS patients.
Gain-of-Function Variant p.Pro2555Arg of von Willebrand Factor Increases Aggregate Size through Altering Stem Dynamics
Chen, Po‐Chia , Xu, Emma-Ruoqi , Tischer, Alexander , Klemm, Ulrike, Meß, Christian , Obser, Tobias, Kutzki, Fabian, König, Gesa, Denis, Cécile V. , Wilmanns, Matthias , Schneider, Stefan W. , Schneppenheim, Reinhard , Hennig, Janosch , Brehm, Maria A. , Auton, Matthew , Xu, Emma-Ruoqi , Wilmanns, Matthias , Tischer, Alexander , Huck, Volker , Aponte-Santamaria, Camilo A. , Gräter, Frauke

Thrombosis and Haemostasis | January 1, 2021 | Volume: 122 | Issue: 02 | Pages: 226-239

10.1055/a-1344-4405 | PMID 33385180 Get It

AbstractThe multimeric plasma glycoprotein (GP) von Willebrand factor (VWF) is best known for recruiting platelets to sites of injury during primary hemostasis. Generally, mutations in the VWF gene lead to loss of hemostatic activity and thus the bleeding disorder von Willebrand disease. By employing cone and platelet aggregometry and microfluidic assays, we uncovered a platelet GPIIb/IIIa-dependent prothrombotic gain of function (GOF) for variant p.Pro2555Arg, located in the C4 domain, leading to an increase in platelet aggregate size. We performed complementary biophysical and structural investigations using circular dichroism spectra, small-angle X-ray scattering, nuclear magnetic resonance spectroscopy, molecular dynamics simulations on the single C4 domain, and dimeric wild-type and p.Pro2555Arg constructs. C4-p.Pro2555Arg retained the overall structural conformation with minor populations of alternative conformations exhibiting increased hinge flexibility and slow conformational exchange. The dimeric protein becomes disordered and more flexible. Our data suggest that the GOF does not affect the binding affinity of the C4 domain for GPIIb/IIIa. Instead, the increased VWF dimer flexibility enhances temporal accessibility of platelet-binding sites. Using an interdisciplinary approach, we revealed that p.Pro2555Arg is the first VWF variant, which increases platelet aggregate size and shows a shear-dependent function of the VWF stem region, which can become hyperactive through mutations. Prothrombotic GOF variants of VWF are a novel concept of a VWF-associated pathomechanism of thromboembolic events, which is of general interest to vascular health but not yet considered in diagnostics. Thus, awareness should be raised for the risk they pose. Furthermore, our data implicate the C4 domain as a novel antithrombotic drug target.
Vestibular migraine and recurrent vertigo of childhood: Diagnostic criteria consensus document of the Classification Committee of Vestibular Disorders of the Bárány Society and the International Headache Society
Berg, Raymond van de , Widdershoven, Josine , Bisdorff, Alexandre , Evers, Stefan , Wiener‐Vacher, Sylvette , Mack, Kenneth J. , Kim, Ji Soo , Jahn, Klaus , Lempert, Thomas , Kim, Ji‐Soo , Cushing, Sharon Lynn , Strupp, Michael Leo

Journal of Vestibular Research | December 29, 2020 | Volume: 31 | Issue: 1 | Pages: 1-9

10.3233/ves-200003 | PMID 33386837 Get It

This paper describes the diagnostic criteria for “Vestibular Migraine of Childhood”, “probable Vestibular Migraine of Childhood” and “Recurrent Vertigo of Childhood” as put forth by the Committee for the Classification of Vestibular Disorders of the Bárány Society (ICVD) and the Migraine Classification subgroup of the International Headache Society. Migraine plays an important role in some subgroups of children with recurrent vertigo. In this classification paper a spectrum of three disorders is described in which the migraine component varies from definite to possibly absent. These three disorders are: Vestibular Migraine of Childhood, probable Vestibular Migraine of Childhood and Recurrent Vertigo of Childhood. The criteria for Vestibular Migraine of Childhood (VMC) include (A) at least five episodes with vestibular symptoms of moderate or severe intensity, lasting between five minutes and 72 hours, (B) a current or past history of migraine with or without aura, and (C) at least half of episodes are associated with at least one migraine feature. Probable Vestibular Migraine of Childhood (probable VMC) is considered when at least three episodes with vestibular symptoms of moderate or severe intensity, lasting between five minutes and 72 hours, are accompanied by at least criterion B or C from the VMC criteria. Recurrent Vertigo of Childhood (RVC) is diagnosed in case of at least three episodes with vestibular symptoms of moderate or severe intensity, lasting between 1 minute and 72 hours, and none of the criteria B and C for VMC are applicable. For all disorders, the age of the individual needs to be below 18 years old. It is recommended that future research should particularly focus on RVC, in order to investigate and identify possible subtypes and its links or its absence thereof with migraine.
The status of digital pathology and machine learning within Alzheimer’s Disease Centers
Stahly, Brian, Robichaud, Elizabeth, Reichard, Ross R., Perrin, Richard J. , Nelson, Peter T. , Lieberman, Andrew P. , Kofler, Julia , Crary, John F. , Chan, Kwun Chuen Gary , Dugger, Brittany N. , White, Charles L. , Schneider, Julie A. , Prokop, Stefan , Kukull, Walter A. , Keene, C. Dirk , Kapasi, Alifiya , Irwin, David J. , Flanagan, Margaret E. , Murray, Melissa E.

Alzheimer's & Dementia | December 7, 2020 | Volume: 16 | Issue: S2 | Pages: No page available

10.1002/alz.043916 Get It

AbstractBackgroundDigital pathology and machine learning (ML) workflows have paradigm shifting potential especially in the field of Alzheimer’s disease and related disorders. However, many institutions/centers may not have access to these technologies. To provide benchmark data, a survey was developed and distributed to National Institutes of Health’s Alzheimer’s Disease Centers (ADCs) in the United States.MethodSurvey questions covered topics such as: infrastructure (i.e. type of digital slide scanners used), funding sources (i.e. how the scanner was funded), and data management/storage (i.e. size of digital files). After development, review, and approval by the ADC digital pathology working group, the survey was distributed via email to 35 past and current ADC directors and/or ADC neuropathology core leaders. Participation in the survey was completely voluntary and answers did not contain any personal data.ResultThe survey generated over a 90% response rate, and the majority of those who completed the survey were neuropathology core leaders; 81% stated their ADC had access to a digital slide scanner, most common brand being Aperio/Leica. One third of respondents stated there was a fee for service to utilize the scanner. For digital pathology and/or ML resources, 40% of respondents stated none are supported in any way by their ADC. To cover the purchase and operation of the scanner, 50% stated they had institutional support. Many were unsure of the approximate average scanned file size of digital images (37%) and total amount of storage space that files occupied (50%). Many (75%) were aware of other departments at their institution working with digital pathology and/or ML, but a similar percentage was unaware of multi‐university or industry partnerships.ConclusionThese results demonstrate many ADCs have access to a digital slide scanner and had institutional support to cover the purchase. However, further investigation is needed to understand hurdles and barriers for implementing both digital pathology and ML workflows aiding in standardized methods across ADCs.
Responsiveness to high intensity interval training depends on insulin sensitivity and protein content and composition of small extracellular vesicles
Apostolopoulou, Maria , Mastrototaro, Lucia , Pesta, Dominik , Filippo, Elisabetta De, Jeleník, Tomáš , Gancheva, Sofiya , Markgraf, Daniel F. , Herder, Christian , Nair, Sreekumar, Lehr, Stefan , Müssig, Karsten , Al‐Hasani, Hadi , Szendroedi, Julia , Hartwig, Sonja , Straßburger, Klaus , Karusheva, Yanislava , Nair, Sreekumar, Roden, Michael

No container title available | December 2, 2020 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.21203/rs.3.rs-105313/v1 Get It

Abstract High intensity interval training (HIIT) improves cardiorespiratory fitness (VO2max), but its impact on metabolism remains unclear. We hypothesized that 12-week HIIT improves insulin sensitivity in people with or without type 2 diabetes (T2D, NDM). However, despite identically improved VO2max, mainly insulin-resistant persons (T2D, IR NDM) responded with improved insulin sensitivity and circulating small extracellular vesicles (SEV), along with reduced myocellular protein kinase Cε activity (T2D) or inflammation (IR NDM). These changes related to the SEV proteome, characterized by downregulated phospholipase C pathway (T2D) and upregulated antioxidant capacity (IR NDM). Thus, SEV cargo likely contributes to modulating exercise responsiveness in humans.
Roadmap: proton therapy physics and biology
Paganetti, Harald , Beltran, Chris , Both, Stefan , Flanz, J., Grosshans, David R. , Knopf, Antje , Langendijk, Johannes A. , Nyström, Håkan, Raaymakers, Bas W. , Richter, Christian , Sawakuchi, Gabriel O. , Schippers, Marco, Teo, B, Unkelbach, Jan , Wohlfahrt, Patrick , Furutani, Keith, Sawakuchi, Gabriel O , Beltran, Chris J , Dong, Lei , Furutani, Keith M. , Grassberger, Clemens , Parodi, Katia , Shaitelman, Simona Flora , Lomax, Antony

Physics in Medicine & Biology | November 23, 2020 | Volume: 66 | Issue: 5 | Pages: 05RM01

10.1088/1361-6560/abcd16 | PMID 33227715 Get It

Abstract The treatment of cancer with proton radiation therapy was first suggested in 1946 followed by the first treatments in the 1950s. As of 2020, almost 200 000 patients have been treated with proton beams worldwide and the number of operating proton therapy (PT) facilities will soon reach one hundred. PT has long moved from research institutions into hospital-based facilities that are increasingly being utilized with workflows similar to conventional radiation therapy. While PT has become mainstream and has established itself as a treatment option for many cancers, it is still an area of active research for various reasons: the advanced dose shaping capabilities of PT cause susceptibility to uncertainties, the high degrees of freedom in dose delivery offer room for further improvements, the limited experience and understanding of optimizing pencil beam scanning, and the biological effect difference compared to photon radiation. In addition to these challenges and opportunities currently being investigated, there is an economic aspect because PT treatments are, on average, still more expensive compared to conventional photon based treatment options. This roadmap highlights the current state and future direction in PT categorized into four different themes, ‘improving efficiency’, ‘improving planning and delivery’, ‘improving imaging’, and ‘improving patient selection’.