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525 citation(s) found for "Y, Gao".

Time course scRNAseq analysis on host mucosal immune responses to influenza virus infection during aging
Wu, Yue , Fain, Cori E. , Johnson, Aaron J. , Sun, Jie , Tang, Jinyi , Gao, Xiaochen , Li, Chaofan , Zhu, Bibo , Zhang, Ruixuan , Ayasoufi, Katayoun , Johnson, Aaron J. , Dong, Haidong , Sun, Jie

The Journal of Immunology | January 3, 2023 | Volume: 208 | Issue: Supplement_1 | Pages: 114.20-114.20

10.4049/jimmunol.208.supp.114.20 Get It

Abstract Aging has been shown to be one of the major risk factors for host morbidity and mortality following infections with respiratory viruses including influenza virus and SARS-CoV-2. The unique immune properties of the aged hosts not only influence pathogen clearance and tissue damage responses, but also modulate the pathogenesis of the long-term sequalae post acute viral clearance. Currently, the dynamics and features of mucosal immune responses following acute respiratory viral infections in the aged hosts remain to be fully elucidated. Here, we characterized the lung cellular and molecular profiles following influenza virus infection in young (~3-month-old) or aged (~24-month-old) mice with a chronological manner from acute to chronic phase. Using DNA-oligo-conjugated CD45 antibody and i.v. labeling, we were able to distinguish the unique responses of circulating vs lung-resident immune cells to influenza virus infection during aging. These responses were further validated by spectral flow cytometry analysis of the lung innate and adaptive immune cells. Further data analysis and integration are warranted for this unique large data set detailing the single cell molecular profiles of mucosal responses to influenza virus infection comparing young and aged hosts.
Development and validation of a recursive partitioning analysis–based pretreatment decision‐making tool identifying ideal candidates for spine stereotactic body radiation therapy
Kowalchuk, Roman O. , Mullikin, Trey C. , Florez, Marcus A. , De, Brian , Spears, Grant M. , Rose, Peter S. , Kim, Dong Kun , Costello, Brian A. , Marion, Joseph , Johnson‐Tesch, Benjamin A., Gao, Robert W. , Shiraishi, Satomi , Lucido, J. John , Olivier, Kenneth R. , Owen, Dawn , Stish, Bradley J. , Waddle, Mark R. , Brown, Paul D. , Ghia, Amol J. , Merrell, Kenneth W. , Marion, Joseph T , Johnson-Tesch, Benjamin A, Lucido, John J , Trifiletti, Daniel M , Waddle, Mark R , Brown, Paul D , Merrell, Kenneth W , Kowalchuk, Roman O. , Shiraishi, Satomi , Siontis, Brittany L. , Morris, Jonathan M. , Trifiletti, Daniel M. , Laack, Nadia N. , Park, Sean S.

Cancer | December 26, 2022 | Volume: 129 | Issue: 6 | Pages: 956-965

10.1002/cncr.34626 | PMID 36571507 Get It

AbstractBackgroundThis study was aimed at developing and validating a decision‐making tool predictive of overall survival (OS) for patients receiving stereotactic body radiation therapy (SBRT) for spinal metastases.MethodsThree hundred sixty‐one patients at one institution were used for the training set, and 182 at a second institution were used for external validation. Treatments most commonly involved one or three fractions of spine SBRT. Exclusion criteria included proton therapy and benign histologies.ResultsThe final model consisted of the following variables and scores: Spinal Instability Neoplastic Score (SINS) ≥ 6 (1), time from primary diagnosis < 21 months (1), Eastern Cooperative Oncology Group (ECOG) performance status = 1 (1) or ECOG performance status > 1 (2), and >1 organ system involved (1). Each variable was an independent predictor of OS (p < .001), and each 1‐point increase in the score was associated with a hazard ratio of 2.01 (95% confidence interval [CI], 1.79–2.25; p < .0001). The concordance value was 0.75 (95% CI, 0.71–0.78). The scores were discretized into three groups—favorable (score = 0–1), intermediate (score = 2), and poor survival (score = 3–5)—with 2‐year OS rates of 84% (95% CI, 79%–90%), 46% (95% CI, 36%–59%), and 21% (95% CI, 14%–32%), respectively (p < .0001 for each). In the external validation set (182 patients), the score was also predictive of OS (p < .0001). Increasing SINS<zaq;6> was predictive of decreased OS as a continuous variable (p < .0001).ConclusionsThis novel score is proposed as a decision‐making tool to help to optimize patient selection for spine SBRT. SINS may be an independent predictor of OS.
Intraoperative Ergonomic Assessment of Exoscopes versus Conventional DIEP Flap
Wang, Tianke , Nguyen, Minh-Doan T. , Harless, Christin A., Smith, Tianqi Gao, Norasi, Hamid , Nguyen, Minh-Doan, Harless, Christin, Smith, Tianqi G, Hallbeck, Susan, Law, Katherine E. , Tetteh, Emmanuel , Hallbeck, M. Susan

Journal of Reconstructive Microsurgery | December 13, 2022 | Volume: 39 | Issue: 06 | Pages: 453-461

10.1055/s-0042-1758188 | PMID 36509101 Get It

Abstract Background This study compared the ergonomics of surgeons during deep inferior epigastric perforator (DIEP) flap surgery using either baseline equipment (loupes, headlights, and an operating microscope) or an exoscope. Plastic surgeons may be at high risk of musculoskeletal problems. Recent studies indicate that adopting an exoscope may significantly improve surgeon postures and ergonomics. Methods Postural exposures, using inertial measurement units at the neck, torso, and shoulders, were calculated in addition to the surgeons' subjective physical and cognitive workload. An ergonomic risk score on a scale of 1 (lowest) to 4 (highest) was calculated for each of the postures observed. Data from 23 bilateral DIEP flap surgeries (10 baseline and 13 exoscope) were collected. Results The neck and torso risk scores decreased significantly during abdominal flap harvest and chest dissection, while right shoulder risk scores increased during the abdominal flap harvest for exoscope DIEP flap procedures compared with. Exoscope anastomoses demonstrated higher neck, right shoulder, and left shoulder risk scores. The results from the survey for the “surgeon at abdomen” showed that the usage of exoscopes was associated with decreased performance and increased mental demand, temporal demand, and effort. However, the results from the “surgeon at chest” showed that the usage of exoscopes was associated with lower physical demand and fatigue, potentially due to differences in surgeon preference. Conclusion Our study revealed some objective evidence for the ergonomic benefits of exoscope; however, this is dependent on the tasks the surgeon is performing. Additionally, personal preferences may be an important factor to be considered in the ergonomic evaluation of the exoscope.
Pharmacological Targeting of Androgen Receptor Elicits Context-Specific Effects in Estrogen Receptor–Positive Breast Cancer
Wei, Lixuan , Gao, Huanyao , Yu, Jia , Zhang, Huan , Nguyen, Thanh Thanh L. , Gu, Yayun , Passow, Marie R. , Carter, Jodi M. , Qin, Bo , Boughey, Judy C. , Weinshilboum, Richard M. , Wang, Liewei , Boughey, JC , Goetz, Matthew P , Weinshilboum, Richard M. , Ingle, J , Wang, Liewei , Nguyen, Thanh Thanh L. , Carter, Jodi , Goetz, Matthew P. , Ingle, James N.

Cancer Research | December 5, 2022 | Volume: 83 | Issue: 3 | Pages: 456-470

10.1158/0008-5472.can-22-1016 | PMID 36469363 Get It

Abstract Androgen receptor (AR) is expressed in 80% to 90% of estrogen receptor α–positive (ER+) breast cancers. Accumulated evidence has shown that AR is a tumor suppressor and that its expression is associated with improved prognosis in ER+ breast cancer. However, both a selective AR agonist (RAD140) and an AR inhibitor (enzalutamide, ENZ) have shown a therapeutic effect on ER+ breast cancer, so the potential for clinical application of AR-targeting therapy for ER+ breast cancer is still in dispute. In this study, we evaluated the efficacy of ENZ and RAD140 in vivo and in vitro in AR+/ER+ breast cancer models, characterizing the relationship of AR and ER levels to response to AR-targeting drugs and investigating the alterations of global gene expression and chromatin binding of AR and ERα after ENZ treatment. In the AR-low setting, ENZ directly functioned as an ERα antagonist. Cell growth inhibition by ENZ in breast cancer with low AR expression was independent of AR and instead dependent on ER. In AR-high breast cancer models, AR repressed ERα signaling and ENZ promoted ERα signaling by antagonizing AR. In contrast, RAD140 activated AR signaling and suppressed AR-high tumor growth by deregulating ERα expression and blocking ERα function. Overall, analysis of the dynamic efficacies and outcomes of AR agonist, and antagonist in the presence of different AR and ERα levels reveals regulators of response and supports the clinical investigation of ENZ in selected ER+ tumors with a low AR/ER ratio and AR agonists in tumors with a high AR/ER ratio. Significance: The ratio of androgen receptor to estrogen receptor in breast cancer dictates the response to AR-targeted therapies, providing guidelines for developing AR-directed treatment strategies for patients with breast cancer.
Mutations Associated with Progression in Follicular Lymphoma Predict Inferior Outcomes in Newly Diagnosed Patients (Alliance 151303)
Krysiak, Kilannin, Trani, Lee , Gao, Feng , Geyer, Susan M. , Cashen, Amanda F. , Mehta-Shah, Neha, Lossos, Izidore S. , Leonard, John P. , Russler‐Germain, David A. , Ramirez, Cody A. , Mosior, Matthew , Watkins, Marcus P. , Gomez, Felicia , Skidmore, Zachary L. , Mehta–Shah, Neha , Kahl, Brad S. , Bartlett, Nancy L. , Hsi, Eric D. , Martin, Peter, Griffith, Malachi , Griffith, Obi L. , Fehniger, Todd A.

Blood | November 28, 2022 | Volume: 140 | Issue: Supplement 1 | Pages: 3543-3545

10.1182/blood-2022-157051 Get It

Glucocorticoids unmask silent non-coding genetic risk variants for common diseases
Nguyen, Thanh Thanh L. , Gao, Huanyao , Liu, Duan , Philips, Trudy Janice , Ye, Zhenqing, Lee, Jeong‐Heon , Shi, Geng‐Xian, Copenhaver, Kaleigh, Zhang, Lingxin , Yu, Jia , Zhang, Huan , Barath, Abhijeet S. , Luong, Maggie, Gaspar‐Maia, Alexandre , Wang, Liewei , Ördög, Tamás , Weinshilboum, Richard M. , Zhang, Huan , Barath, Abhijeet, Zhang, Cheng , Nguyen, Thanh Thanh L. , Lee, Jeong-Heon , Gaspar-Maia, Alexandre , Liu, Duan , Copenhaver, Kaleigh M. , Wei, Lixuan , Zhang, Cheng , Li, Hu , Weinshilboum, Richard M.

Nucleic Acids Research | November 18, 2022 | Volume: 50 | Issue: 20 | Pages: 11635-11653

10.1093/nar/gkac1045 | PMID 36399508 Get It

Abstract Understanding the function of non-coding genomic sequence variants represents a challenge for biomedicine. Many diseases are products of gene-by-environment interactions with complex mechanisms. This study addresses these themes by mechanistic characterization of non-coding variants that influence gene expression only after drug or hormone exposure. Using glucocorticoid signaling as a model system, we integrated genomic, transcriptomic, and epigenomic approaches to unravel mechanisms by which variant function could be revealed by hormones or drugs. Specifically, we identified cis-regulatory elements and 3D interactions underlying ligand-dependent associations between variants and gene expression. One-quarter of the glucocorticoid-modulated variants that we identified had already been associated with clinical phenotypes. However, their affected genes were ‘unmasked’ only after glucocorticoid exposure and often with function relevant to the disease phenotypes. These diseases involved glucocorticoids as risk factors or therapeutic agents and included autoimmunity, metabolic and mood disorders, osteoporosis and cancer. For example, we identified a novel breast cancer risk gene, MAST4, with expression that was repressed by glucocorticoids in cells carrying the risk genotype, repression that correlated with MAST4 expression in breast cancer and treatment outcomes. These observations provide a mechanistic framework for understanding non-coding genetic variant-chemical environment interactions and their role in disease risk and drug response.
NS2NS: Self-Learning for Seismic Image Denoising
Liu, Naihao , Wang, Jiale , Gao, Jinghuai , Yu, Kai , Lou, Yihuai , Pu, Yitao , Chang, Shaojie

IEEE Transactions on Geoscience and Remote Sensing | November 3, 2022 | Volume: 60 | Issue: No issue available | Pages: 1-11

10.1109/tgrs.2022.3217289 Get It

Scientific opportunities in resilience research for cardiovascular health and wellness. Report from a National Heart, Lung, and Blood Institute workshop
Taylor, Herman A. , Finkel, Toren , Gao, Yunling , Ballinger, Scott W. , Campo, Rebecca , Chen, Rong , Chen, Shu Hui, Davidson, Karina W. , Jaquish, Cashell E. , Odden, Michelle C. , Papanicolaou, George , Srinivas, Pothur R. , Tjurmina, Olga, Wolz, Michael , Galis, Zorina S. , Davidson, Karina , Iruela-Arispe, M Luisa , Jaquish, Cashell , LeBrasseur, Nathan K , Odden, Michelle C , Papanicolaou, George J , Picard, Martin , Srinivas, Pothur , Wolz, Michael , Galis, Zorina S , LeBrasseur, Nathan K.

The FASEB Journal | November 2, 2022 | Volume: 36 | Issue: 12 | Pages: No page available

10.1096/fj.202201407r | PMID 36322029 Get It

Abstract Exposure of biological systems to acute or chronic insults triggers a host of molecular and physiological responses to either tolerate, adapt, or fully restore homeostasis; these responses constitute the hallmarks of resilience. Given the many facets, dimensions, and discipline‐specific focus, gaining a shared understanding of “resilience” has been identified as a priority for supporting advances in cardiovascular health. This report is based on the working definition: “ Resilience is the ability of living systems to successfully maintain or return to homeostasis in response to physical, molecular, individual, social, societal, or environmental stressors or challenges ,” developed after considering many factors contributing to cardiovascular resilience through deliberations of multidisciplinary experts convened by the National Heart, Lung, and Blood Institute during a workshop entitled: “ Enhancing Resilience for Cardiovascular Health and Wellness.” Some of the main emerging themes that support the possibility of enhancing resilience for cardiovascular health include optimal energy management and substrate diversity, a robust immune system that safeguards tissue homeostasis, and social and community support. The report also highlights existing research challenges, along with immediate and long‐term opportunities for resilience research. Certain immediate opportunities identified are based on leveraging existing high‐dimensional data from longitudinal clinical studies to identify vascular resilience measures, create a ‘resilience index,’ and adopt a life‐course approach. Long‐term opportunities include developing quantitative cell/organ/system/community models to identify resilience factors and mechanisms at these various levels, designing experimental and clinical interventions that specifically assess resilience, adopting global sharing of resilience‐related data, and cross‐domain training of next‐generation researchers in this field.
Multi-cancer early detection test sensitivity for cancers with and without current population-level screening options
Shao, Spencer H. , Clement, Jessica, Chung, Gina G., Gao, Jingjing , Hubbell, Earl , Liu, Minetta C. , Yimer, Habte, Tummala, Mohan K., Hubbell, Earl , Allen, Brian, Swanton, Charles , Tang, W.H. Wilson

Tumori Journal | November 1, 2022 | Volume: 109 | Issue: 3 | Pages: 335-341

10.1177/03008916221133136 | PMID 36316952 Get It

There are four solid tumors with common screening options in the average-risk population aged 21 to 75 years (breast, cervical, colorectal, and, based on personalized risk assessment, prostate), but many cancers lack recommended population screening and are often detected at advanced stages when mortality is high. Blood-based multi-cancer early detection tests have the potential to improve cancer mortality through additional population screening. Reported here is a post-hoc analysis from the third Circulating Cell-free Genome Atlas substudy to examine multi-cancer early detection test performance in solid tumors with and without population screening recommendations and in hematologic malignancies. Participants with cancer in the third Circulating Cell-free Genome Atlas substudy analysis were split into three subgroups: solid screened tumors (breast, cervical, colorectal, prostate), solid unscreened tumors, and hematologic malignancies. In this post hoc analysis, sensitivity is reported for each subgroup across all ages and those aged ⩾50 years overall, by cancer, and by clinical cancer stage. Aggregate sensitivity in the solid screened, solid unscreened, and hematologic malignancy subgroups was 34%, 66%, and 55% across all cancer stages, respectively; restricting to participants aged ⩾50 years showed similar aggregate sensitivity. Aggregate sensitivity was 27%, 53%, and 60% across stages I to III, respectively. Within the solid unscreened subgroup, aggregate sensitivity was >75% in 8/18 cancers (44%) and >50% in 13/18 (72%). This multi-cancer early detection test detected cancer signals at high (>75%) sensitivity for multiple cancers without existing population screening recommendations, suggesting its potential to complement recommended screening programs. Clinical trial identifier: NCT02889978.
Examining the effectiveness of a lower back exoskeleton in reducing discomfort and workload in vascular surgery
Wang, Tianke , Tetteh, Emmanuel , Smith, Tianqi Gao, Mendes, Bernardo C. , Tetteh, Emmanuel , Norasi, Hamid , Hallbeck, M. Susan

Proceedings of the Human Factors and Ergonomics Society Annual Meeting | October 28, 2022 | Volume: 66 | Issue: 1 | Pages: 2153-2157

10.1177/1071181322661169 Get It

Musculoskeletal disorders and intraoperative pain are prevalent among vascular surgeons which can negatively affect their surgical performance and quality of life. The effectiveness of a lower back support exoskeleton to reduce discomfort of the back, subjective fatigue, and the workload associated with performing vascular surgery was evaluated, as well as the participants’ intraoperative upper body postures. Three vascular surgeons were asked to rate their discomfort and fatigue before, during and after performing surgery, and their subjective workload post-operatively. Inertial measurement units (IMUs) were used to measure their intraoperative body postures. No significant differences were found between exoskeleton and baseline discomfort, fatigue, workload, or intraoperative postures. This indicates that although the exoskeleton did not restrict the vascular surgeons’ postures, this exoskeleton was ineffective at reducing their discomfort or workload. Future studies with exoskeletons specifically designed for healthcare applications may show more efficacy in reducing the ergonomic risks to surgeons.