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1899 citation(s) found for "Núñez, Sara".

A study of real-time CLIA-enabled whole genome tumor sequencing: Results for testicular cancer and sarcomatoid RCC.
Condjella, Rachel, Egan, Jan B. , Champion, Mia D., Hunt, Katherine S., McCullough, Ann E. , Kurdoglu, Ahmet, Aldrich, Jessica, Izatt, Tyler, Christoforides, Alexis, Barrett, Michael T. , Craig, David W. , Carpten, John D. , Stewart, A. Keith , Bryce, Alan H. , Borad, Mitesh J. , McWilliams, Robert R. , Nasser, Sara A. , Phillips, L Taylor , Liang, Winnie S.

Journal of Clinical Oncology | February 24, 2017 | Volume: 32 | Issue: 4_suppl | Pages: 463-463

10.1200/jco.2014.32.4_suppl.463 Get It

463 Background: The genomic assessment of cancer has been revolutionized by next-generation sequencing and is increasingly being applied in the clinic to guide therapeutic decision-making. Time to reporting of results, specimen quantity, and analyte quality have constrained initial clinical applications to gene panels and whole exome based strategies. Methods: Patients underwent surgical resection, excisional or core biopsies, or bone marrow biopsy. Samples were analyzed by whole genome or exome sequencing and RNA sequencing, bioinformatics analysis, and therapeutic target prioritization by a multi-disciplinary Clinical Genomics Board. All prioritized targets were CLIA validated using Sanger sequencing, RT-qPCR, FISH, or IHC as appropriate. Treatment was delivered using off-label FDA approved drugs, clinical trials, or single patient INDs. Results: We have enrolled 40 patients with advanced, treatment-refractory cancers of whom sequencing data is available on 33. The initial 6 patients were evaluated in a non-CLIA pilot phase and 27 in the CLIA enabled phase. Upon availability of the initial report, identified targets of putative therapeutic relevance were then prioritized by the CGB in 22/27 patients (81%) for subsequent CLIA validation. Eleven patients have been treated with genomically selected therapy with partial response in 3/10 assessed patients. A testicular cancer patient had aberrations in two testes specific genes, a copy number gain in TSSK6 and a novel gene fusion between thyroid hormone receptor associated protein 3 (THRAP3) and Tektin 2 (TEKT2). Additionally, a case of papillary renal cell carcinoma had an amplification of YAP1 and a previously unreported P287T mutation in CCND1, suggesting potential benefit with a CDK4/6 inhibitor. Treatment is ongoing and results will be reported. Conclusions: Integrated whole genome analysis in a CLIA setting is feasible. Integration of SNV, copy number and transcriptional data may allow for selection of putative driver genes to enhance targeted therapy decisions. Barriers for future broader implementation include the need for reduced time from biopsy to report and availability of therapies.
Final overall survival (OS) and safety analyses of RIBBON-2, a randomized phase III trial of bevacizumab (BEV) versus placebo (PL) combined with second-line chemotherapy (CT) for HER2-negative BEV-naive metastatic breast cancer (MBC).
Brufsky, Adam , Hurvitz, Sara A. , Perez, Edith A. , Yamamoto, Hideharu, Valero, Vicente , O’Neill, Vincent, Rugo, Hope S. , Brufsky, Adam M

Journal of Clinical Oncology | February 24, 2017 | Volume: 30 | Issue: 27_suppl | Pages: 100-100

10.1200/jco.2012.30.27_suppl.100 Get It

100 Background: Combining BEV with CT significantly improved progression-free survival (primary endpoint) in the E2100, AVADO, and RIBBON-1 trials in the 1st-line setting and the RIBBON-2 trial in the 2nd-line setting. Primary efficacy and safety results from RIBBON-2 have been published; here we present final OS results. Methods: Eligible patients (pts) had MBC that had progressed on 1st-line CT without BEV. 2nd-line CT (taxane, gemcitabine, capecitabine, or vinorelbine) was chosen before 2:1 randomization to CT with either BEV (10 mg/kg q2w or 15 mg/kg q3w) or PL continued until progression. Stratification factors were 2nd-line CT, hormone receptor status, and time from MBC diagnosis to 1st progression. All pts could receive BEV at progression. The primary endpoint was PFS. Final analysis of OS, a secondary endpoint, in the intent-to-treat population was planned after 557 events and provided 80% power to detect a hazard ratio (HR) of 0.77 (median OS increased from 14.0 to 18.2 months) at α=0.04. Results: At the time of data cutoff (Oct. 31, 2011), 184 (82%) of 225 pts in the CT/PL arm and 376 (82%) of 459 pts in the CT/BEV arm had died. BEV was administered in subsequent treatment lines in 12% vs 6% of pts, respectively. There was no difference in OS between treatment arms: HR 1.013 (95% CI 0.845–1.215), log-rank p=0.8843. Median OS was 17.8 months with CT/PL vs 18.6 months with CT/BEV. The 1-year OS rates were 69% vs 71%, respectively. Subgroup analyses by CT cohort showed HRs ranging from 0.86 (95% CI 0.58–1.29) in the capecitabine cohort (n=144) to 1.44 (95% CI 0.82–2.53) in the vinorelbine cohort (n=76). HRs were close to 1 for the two largest CT cohorts (taxane and gemcitabine). Exploratory analysis in the subgroup of patients with triple-negative MBC showed a HR of 0.85 (95% CI 0.58–1.26). Updated safety results were similar to those previously reported from the primary analysis. There were fewer fatal adverse events in the CT/BEV arm (1.5%) than in the CT/PL arm (3.2%). Conclusions: Final OS results from RIBBON-2 reveal no difference between treatment arms. No new safety signals were observed.
The influence of treatment facility volume on the mortality of multiple myeloma patients.
Bartley, Adam C. , Crowson, Cynthia S. , Shah, Nilay D. , Holmes, David R. , Go, Ronald S. , Habermann, Elizabeth B. , Holton, Sara

Journal of Clinical Oncology | February 24, 2017 | Volume: 34 | Issue: 7_suppl | Pages: 284-284

10.1200/jco.2016.34.7_suppl.284 Get It

284 Background: MM is an uncommon cancer with annual incidence of only 27,000 cases in the US. Our study determined the extent to which the number of MM patients treated annually in a treatment facility affected all-cause mortality. Methods: We used the National Cancer Data Base (NCDB) to identify adult patients with MM diagnosed from 2003-2011. NCDB is sourced from over 1,500 Commission on Cancer-accredited cancer registries representing 70% of cancer cases in the US. We classified treatment facilities by quartiles based on facility volume (mean patients/year): Quartile 1 (Q1: < 3.6), Quartile 2 (Q2: 3.6-6.1), Quartile 3 (Q3: 6.1-10.3) and Quartile 4 (Q4: > 10.3). We used hot deck imputation to account for missing data, Cox regression to analyze the association between facility volume and time-to-death, and random intercepts to adjust for multiple patients per facility. Results: There were 94,722 MM patients cared for at 1,333 facilities. Most patients (73.5%) were diagnosed and treated in the same facility. The median age at diagnosis was 67 years and 54.7% were males. The median annual facility volume was 6.1 patients/year (IQR: 3.6-10.3; range: 0.2-109.9). The distribution of patients according to facility volume was Q1 (5.2%), Q2 (12.6%), Q3 (21.9%) and Q4 (60.3%). The unadjusted median overall survival by facility volume was: Q1: 26.9 months, Q2: 29.1 months, Q3: 31.9 months and Q4: 49.1 months. After multivariable analysis adjusting for demographic (sex, age, race, ethnicity), socioeconomic (income, education, insurance type), geographic (area of residence, treatment facility location), co-morbidity (Charlson-Deyo score), and disease-specific (year of diagnosis) factors, we show that facility volume remains an independent predictor of all-cause mortality. Compared to patients treated at Q4 facilities, patients treated at lower quartile facilities had a higher risk of death (Q3 HR: 1.16 [95% CI, 1.12-1.20]; Q2: 1.21 [1.17-1.26]; Q1: 1.27 [1.22-1.34]). We observed an inverse volume-outcome relationship up to an annual facility volume of approximately 60 patients. Conclusions: MM patients treated at higher volume facilities had lower risk of mortality compared to those treated at lower volume facilities.
Expansion of myeloid-derived suppressor cells with aging in the bone marrow of mice through a NF-κB-dependent mechanism
Flores, Rafael R. , Clauson, Cheryl L., Cho, Joonseok , Lee, Byeong-Chel, McGowan, Sara J., Baker, Darren J. , Niedernhofer, Laura J. , Robbins, Paul D. , McGowan, Sara , Niedernhofer, Laura J , Robbins, Paul D , Baker, Darren J

Aging Cell | February 23, 2017 | Volume: 16 | Issue: 3 | Pages: 480-487

10.1111/acel.12571 | PMID 28229533 Get It

Informal Training Experiences and Explicit Bias against African Americans among Medical Students
Burke, Sara E. , Perry, Sylvia , Cunningham, Brooke A. , Yeazel, Mark W. , Przedworski, Julia , Ryn, Michelle van , Phelan, Sean M. , van Ryn, Michelle, Dovidio, John F. , Burgess, Diana Jill , Hardeman, Rachel R. , Perry, Sylvia P , van Ryn, Michelle

Social Psychology Quarterly | February 16, 2017 | Volume: 80 | Issue: 1 | Pages: 65-84

10.1177/0190272516668166 | PMID 31452559 Get It

Despite the widespread inclusion of diversity-related curricula in U.S. medical training, racial disparities in the quality of care and physician bias in medical treatment persist. The present study examined the effects of both formal and informal experiences on non-African American medical students’ ( N = 2,922) attitudes toward African Americans in a longitudinal study of 49 randomly selected U.S. medical schools. We assessed the effects of experiences related to medical training, accounting for prior experiences and attitudes. Contact with African Americans predicted positive attitudes toward African Americans relative to white people, even beyond the effects of prior attitudes. Furthermore, students who reported having witnessed instructors make negative racial comments or jokes were significantly more willing to express racial bias themselves, even after accounting for the effects of contact. Examining the effects of informal experiences on racial attitudes may help develop a more effective medical training environment and reduce racial disparities in healthcare.
Association Between Treatment Facility Volume and Mortality of Patients With Multiple Myeloma
Bartley, Adam C. , Crowson, Cynthia S. , Shah, Nilay D., Habermann, Elizabeth B. , Holmes, David R. , Holton, Sara J, Go, Ronald S. , Holton, Sara , Habermann, Elizabeth

Journal of Clinical Oncology | February 15, 2017 | Volume: 35 | Issue: 6 | Pages: 598-604

10.1200/jco.2016.68.3805 | PMID 28199819 Get It

Purpose To determine the association between the number of patients with multiple myeloma (MM) treated annually at a treatment facility (volume) and all-cause mortality (outcome). Methods Using the National Cancer Database, we identified patients diagnosed with MM between 2003 and 2011. We classified the facilities by quartiles (Q; mean patients with MM treated per year): Q1: < 3.6; Q2: 3.6 to 6.1, Q3: 6.1 to 10.3, and Q4: > 10.3. We used random intercepts to account for clustering of patients within facilities and Cox regression to determine the volume-outcome relationship, adjusting for demographic (sex, age, race, ethnicity), socioeconomic (income, education, insurance type), geographic (area of residence, treatment facility location, travel distance), and comorbid (Charlson-Deyo score) factors and year of diagnosis. Results There were 94,722 patients with MM treated at 1,333 facilities. The median age at diagnosis was 67 years, and 54.7% were men. The median annual facility volume was 6.1 patients per year (range, 0.2 to 109.9). The distribution of patients according to facility volume was: Q1: 5.2%, Q2: 12.6%, Q3: 21.9%, and Q4: 60.3%. The unadjusted median overall survival by facility volume was: Q1: 26.9 months, Q2: 29.1 months, Q3: 31.9 months, and Q4: 49.1 months ( P < .001). Multivariable analysis showed that facility volume was independently associated with all-cause mortality. Compared with patients treated at Q4 facilities, patients treated at lower-quartile facilities had a higher risk of death (Q3 hazard ratio [HR], 1.12 [95% CI, 1.08 to 1.16]; Q2 HR, 1.17 [95% CI, 1.12 to 1.21]; Q1 HR, 1.22 [95% CI, 1.17 to 1.28]). Conclusion Patients who were treated for MM at higher-volume facilities had a lower risk of mortality compared with those who were treated at lower-volume facilities.
Association of sleep disturbance and sexual function in postmenopausal women
Kling, Juliana M. , Naughton, Michelle J. , Temkit, M’hamed , Sullivan, Shannon D. , Gower, Emily W. , Weitlauf, Julie C. , Nowakowski, Sara , Crandall, Carolyn , Manson, JoAnn E. , Hale, Lauren E. , Kling, Juliana M

Menopause | February 14, 2017 | Volume: 24 | Issue: 6 | Pages: 604-612

10.1097/gme.0000000000000824 | PMID 28141665 Get It

Abstract Objective: Sleep disturbance and sexual dysfunction are common in menopause; however, the nature of their association is unclear. The present study aimed to determine whether sleep characteristics were associated with sexual activity and sexual satisfaction. Methods: Sexual function in the last year and sleep characteristics (past 4 wk) were assessed by self-report at baseline for 93,668 women age 50 to 79 years enrolled in the Women's Health Initiative (WHI) Observational Study (OS). Insomnia was measured using the validated WHI Insomnia Rating Scale. Sleep-disordered breathing (SDB) risk was assessed using questions adapted from the Berlin Questionnaire. Using multivariate logistic regression, we examined cross-sectional associations between sleep measures and two indicators of sexual function: partnered sexual activity and sexual satisfaction within the last year. Results: Fifty-six percent overall reported being somewhat or very satisfied with their current sexual activity, and 52% reported partnered sexual activity within the last year. Insomnia prevalence was 31%. After multivariable adjustment, higher insomnia scores were associated with lower odds of sexual satisfaction (yes/no) (odds ratio [OR] 0.92, 95% CI, 0.87-0.96). Short sleep duration (<7-8 h) was associated with lower odds of partnered sexual activity (yes/no) (≤5 h, OR 0.88, 95% CI, 0.80-0.96) and less sexual satisfaction (≤5 h, OR 0.88, 95% CI, 0.81-0.95). Conclusions: Shorter sleep durations and higher insomnia scores were associated with decreased sexual function, even after adjustment for potential confounders, suggesting the importance of sufficient, high-quality sleep for sexual function. Longitudinal investigation of sleep and its impact on sexual function postmenopause will clarify this relationship.
IV fosphenytoin in obese patients
Clark, Sarah L. , Leloux, Megan R. , Dierkhising, Ross , Cascino, Gregory D. , Hocker, Sara E. , Dierkhising, Ross A

Neurology Clinical Practice | February 13, 2017 | Volume: 7 | Issue: 1 | Pages: 45-52

10.1212/cpj.0000000000000322 | PMID 29849211 Get It

TP53-based interaction analysis identifies cis-eQTL variants for TP53BP2, FBXO28, and FAM53A that associate with survival and treatment outcome in breast cancer
Fagerholm, Rainer, Khan, Sofia , Schmidt, Marjanka K. , García‐Closas, Montserrat , Saarela, Jani , Beesley, Jonathan, Jamshidi, Maral, Aittomäki, Kristiina, Liu, Jianjun , Ali, H. Raza , Andrulis, Irene L. , Beckmann, Matthias W. , Blows, Fiona M., Brenner, Hermann , Chang‐Claude, Jenny, Couch, Fergus J. , Fasching, Peter A. , Figueroa, Jonine D. , Floris, Giuseppe , Glendon, Gord, Guo, Qi , Hallberg, Emily, Hamann, Ute , Holleczek, Bernd , Hooning, Maartje J. , Hopper, John L. , Jager, Agnes , Kabisch, Maria, Investigators, kConFab AOCS, Keeman, Renske , Kosma, Veli‐Matti, Lambrechts, Diether , Lindblom, Annika , Mannermaa, Arto, Margolin, Sara , Provenzano, Elena , Shah, Mitul , Southey, Melissa C. , Michailidou, Kyriaki , Wang, Qin, Bolla, Manjeet K. , Dunning, Alison M. , Easton, Douglas F. , Chenevix‐Trench, Georgia , Blomqvist, Carl , Thorne, Heather , Bowtell, David D.L. , Lambrechts, Diether , Heikkilä, Päivi , Behrens, Sabine , Couch, Fergus J. , Czene, Kamila , Hall, Per N , Hooning, Maartje J. , Mannermaa, Arto, Dennis, Joe , Lush, Michael J. , Wang, Qin, Pharoah, Paul D.P. , Nevanlinna, Heli , Lambrechts, Diether , Southey, Melissa C , Dunning, Alison M , Lambrechts, Diether , Brenner, Hermann , García-Closas, Montserrat , Schmidt, Marjanka K , Michailidou, Kyriaki , Chenevix-Trench, Georgia , Figueroa, Jonine D , Bowtell, David D , Lindblom, Annika , Liu, Jing

Oncotarget | February 7, 2017 | Volume: 8 | Issue: 11 | Pages: 18381-18398

10.18632/oncotarget.15110 | PMID 28179588 Get It