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627 citation(s) found for "Qu, Shen".

Elevated lipoprotein(a) levels linked to new-onset atrial fibrillation: insights from a retrospective cohort study
Kamel, Moaz, Mahmoud, Ahmed , Badr, Amro , Pereyra, Milagros , Scalia, Isabel G. , Ali, Nima Baba , Alsidawi, Said , Lester, Steven J., Rmilah, Anan Abu, Barry, Timothy, Shen, Win K., Scott, Luis R. , Masry, Hicham El , Valverde, Arturo M. , Sorajja, Dan , Ayoub, Chadi , Arsanjani, Reza , Mahmoud, Ahmed K , Pereyra Pietri, Milagros, Alsidawi, Said , Sardana, Mayank , Sorajja, Dan , Ayoub, Chadi , Arsanjani, Reza , El Masry, Hicham , Pereyra, Milagros , Scalia, Isabel G , Awad, Kamal , Farina, Juan M. , Abbas, Mohammed Tiseer , Rmilah, Anan Abu , Srivathsan, Komandoor

European Journal of Preventive Cardiology | February 7, 2025 | Volume: 32 | Issue: 9 | Pages: 769-777

10.1093/eurjpc/zwaf063 | PMID 39919039 Get It

Abstract Aims Atrial fibrillation (AF) is the most common cardiac arrhythmia. Although lipoprotein(a) [Lp(a)] is known to be a well-established risk factor for atherosclerotic cardiovascular disease, its role in the development of AF, independent of this association, remains unclear. Methods and results Adult patients from the three Mayo Clinic sites with a baseline Lp(a) and without AF history were included. Patients were categorized into two groups based on their Lp(a) levels: high Lp(a) (≥50 mg/dL) and low Lp(a) (<50 mg/dL). Survival probabilities free from incident AF were compared between Lp(a) groups, during a follow-up period up to 15 years, using the Kaplan–Meier curve and the log-rank test. Multivariable Cox regression analysis was also conducted. A total of 75 376 patients were included (median age: 55 years, 59% males), with a median follow-up duration of 8.8 (inter-quartile range: 3.4, 14.8) years. Incident AF was detected in 5738 (7.6%) patients. Survival probability free from incident AF was significantly lower in patients with elevated Lp(a) (86%) compared with those with low Lp(a) (88%, log-rank P < 0.001). Multivariable analysis adjusted for potential risk factors of AF showed a statistically significant association of elevated Lp(a) with an 11% increase in AF risk (adjusted hazard ratio: 1.11, 95% confidence interval: 1.05–1.18). Conclusion Our study suggests that elevated Lp(a) (≥50 mg/dL) is an independent risk factor for incident AF. Future prospective studies are warranted to validate our results and to test if reducing Lp(a) could mitigate the burden of AF.
ATAD2 Drives Prostate Cancer Progression to Metastasis
Dutta, Anindita , Rodríguez-Calero, Antonio , Ronaldson-Bouchard, Kacey , Offermann, Anne , Rahman, Daoud , Vhatkar, Twinkle Bapuji , Hasson, Dan , Alshalalfa, Mohammed , Davicioni, Elai , Karnes, R. Jeffrey , Abate‐Shen, Cory , Rubin, Mark A , Vunjak-Novakovic, Gordana , Abate-Shen, Cory , Arriaga, Juan Martin , Davicioni, Elai , Offermann, Anne , Rubin, Mark A.

Molecular Cancer Research | February 5, 2025 | Volume: 23 | Issue: 5 | Pages: 379-390

10.1158/1541-7786.mcr-24-0544 | PMID 39907729 Get It

Abstract Metastasis accounts for the overwhelming majority of cancer deaths. In prostate cancer and many other solid tumors, progression to metastasis is associated with drastically reduced survival outcomes, yet the mechanisms behind this progression remain largely unknown. ATPase family AAA domain containing 2 (ATAD2) is an epigenetic reader of acetylated histones that is overexpressed in multiple cancer types and usually associated with poor patient outcomes. However, the functional role of ATAD2 in cancer progression and metastasis has been relatively understudied. Here, we employ genetically engineered mouse models of prostate cancer bone metastasis, as well as multiple independent human cohorts, to show that ATAD2 is highly enriched in bone metastasis compared with primary tumors and significantly associated with the development of metastasis. We show that ATAD2 expression is associated with MYC pathway activation in patient datasets and that, at least in a subset of tumors, MYC and ATAD2 can regulate each other’s expression. Using functional studies on mouse bone metastatic cell lines and innovative organ-on-a-chip bone invasion assays, we establish a functional role for ATAD2 inhibition in reducing prostate cancer metastasis and growth in bone. Implications: Our study highlights ATAD2 as a driver of prostate cancer progression and metastasis and suggests it may constitute a promising novel therapeutic target.
AugGPT: Leveraging ChatGPT for Text Data Augmentation
Dai, Haixing , Liu, Zhengliang , Liao, Wenxiong , Huang, Xiaoke , Wu, Zihao , Zhao, Lin , Xu, Shaochen , Zeng, Fang , Liu, Wei , Liu, Ninghao , Shen, Dinggang, Liu, Tianming , Li, Xiang , Liu, Wei , Cao, Yihan , Li, Sheng , Zhu, Dajiang , Cai, Hongmin , Sun, Lichao , Li, Quanzheng , Shen, Dinggang G. , Li, Xiang

IEEE Transactions on Big Data | January 30, 2025 | Volume: 11 | Issue: 3 | Pages: 907-918

10.1109/tbdata.2025.3536934 Get It

Impact of tislelizumab + chemotherapy versus placebo + chemotherapy on patient-reported symptoms and overall survival (OS) by programmed death-ligand 1 (PD-L1) expression in advanced or metastatic esophageal squamous cell carcinoma (ESCC): A post hoc analy
Yoon, Harry H. , Pan, Yueyin , Park, Sook Ryun , BARNES, FREDERICK R., Sun, Tianmo, Barnes, Gisoo , Victor, Timothy W., Xu, Jianming , Kato, Ken , Shen, Lin , Cutsem, Eric Van , Jiménez‐Fonseca, Paula , Sun, Tianmo

Journal of Clinical Oncology | January 27, 2025 | Volume: 43 | Issue: 4_suppl | Pages: 366-366

10.1200/jco.2025.43.4_suppl.366 Get It

366 Background: While improved survival has been previously demonstrated, the impact of immunotherapy on HRQoL in ESCC has not been well examined. Traditional PRO-based analyses in oncology trials, such as time to deterioration (TTD) and mixed models for repeated measures (MMRMs), are limited by discounting recurrent PRO events. Thus, we applied a 3-component joint model (JM) framework to define more clinically interpretable associations between patient-reported symptoms, treatment effects, and OS among subgroups of patients with ESCC from RATIONALE-306, which met its primary endpoint, with PD-L1 expression of ≥1%, ≥5%, and ≥10%. Methods: The final analytic sample included 226 patients in the tislelizumab + chemotherapy arm (T+C), 242 in the placebo + chemotherapy arm (P+C) for PD-L1 ≥1%, 113 in the T+C arm and 103 in the P+C arm for PD-L1 ≥5%, and 168 in the T+C arm and 178 in the P+C arm for PD-L1 ≥10%.From EORTC QLQ-C30 and OES18, 7 keysymptom domains were modeled (GHS, physical functioning, fatigue, dysphagia, pain, reflux, dietary restrictions). PRO data were collected at baseline and at every treatment cycle (up to 6 cycles), then every other cycle, and at safety follow-up, and change from baseline (CFBL) was analyzed. The joint model comprised three components: 1) linear mixed model predicting CFBL symptom scores; 2) Cox proportional hazard model (CPH) for time to OS; and 3) frailty (random effects for recurrent deterioration events [RDEs]) CPH model for time to PRO-based RDEs. Osoba (1998) 10-point threshold was used to define RDEs. Results: Adjusted completion rates were >90% in the ITT population for both arms. Significant T+C treatment effects wereobserved for physical functioning in PD-L1 ≥5% ( P =0.0476), and pain in PD-L1 ≥1% ( P =0.0028) and PD-L1 ≥5% ( P =0.0149) subgroups, but not in PD-L1 ≥10%. For other 5 symptoms (ie, GHS, fatigue, reflux, dysphagia, dietary restrictions), there were no statistically significant differences between treatment arms. However, T+C was associated with significant reductions in the risk of death across all 7 key symptoms and PD-L1 subgroups. As one example, with respect to interaction between pain and OS, T+C was associated with a 22% (HR, 0.78 [95% CI, 0.652-0.931]), 33% (HR, 0.67 [95% CI, 0.515-0.860]), and 47% (HR, 0.50 [95% CI, 0.344-0.720]) reduction in the risk of death in PD-L1 ≥1%, ≥5%, and ≥10%, respectively compared with P+C. Conclusions: In this analysis, the addition of tislelizumab to chemotherapy was associated with significantly less deterioration in multiple PRO symptoms including physical functioning and pain, alongside a lower risk of death, after adjusting for recurring deterioration events using a frailty model across multiple PD-L1 expression subgroups.
Advances in the understanding and therapeutic manipulation of cancer immune responsiveness: a Society for Immunotherapy of Cancer (SITC) review
Cesano, Alessandra, Augustin, Ryan C. , Barrea, Luigi , Carturan, Alberto , Ho, Winson S. , Kather, Jakob Nikolas , Lu, Rongze O., McQuade, Jennifer L. , Najjar, Yana G. , Shen, Rhine R. , Warner, Allison Betof , Warren, Sarah H. , Ziv, Elad , Marincola, Francesco M, Augustin, Ryan, Carturan, Alberto , Najjar, Yana G , Ruella, Marco , Betof Warner, Allison , Warren, Sarah , Ziv, Elad , Bedognetti, Davide , Bruno, Tullia Carmela , Hammer, Christian , Kather, Jakob Nikolas , Kirchhoff, Tomas , Pietrobon, Violena , Ruella, Marco , Soldati, Laura , Spencer, Christine N. , Marincola, Francesco M.

Journal for ImmunoTherapy of Cancer | January 17, 2025 | Volume: 13 | Issue: 1 | Pages: e008876

10.1136/jitc-2024-008876 | PMID 39824527 Get It

Cancer immunotherapy—including immune checkpoint inhibition (ICI) and adoptive cell therapy (ACT)—has become a standard, potentially curative treatment for a subset of advanced solid and liquid tumors. However, most patients with cancer do not benefit from the rapidly evolving improvements in the understanding of principal mechanisms determining cancer immune responsiveness (CIR); including patient-specific genetically determined and acquired factors, as well as intrinsic cancer cell biology. Though CIR is multifactorial, fundamental concepts are emerging that should be considered for the design of novel therapeutic strategies and related clinical studies. Recent advancements as well as novel approaches to address the limitations of current treatments are discussed here, with a specific focus on ICI and ACT.
CSF proteomics related to the neurovascular unit are associated with white matter hyperintensity volumes and cerebral microhemorrhages in autosomal dominant Alzheimer disease
Shen, Yuanyuan , Chen, Charles D., Strain, Jeremy F. , Shirzadi, Zahra , Chen, Gengsheng , Massoumzadeh, Parinaz , Lu, Ruijin , Chhatwal, Jasmeer P. , Morris, John C., Perrin, Richard J. , Network, Dominantly Inherited Alzheimer, Joseph‐Mathurin, Nelly , Friedrichsen, Karl A. , McCullough, Austin , Gordon, Brian A. , Llibre‐Guerra, Jorge J. , Hassenstab, Jason , Ibanez, Laura , Schultz, Stephanie A. , Morris, John C. , An, Hongyu , Xiong, Chengjie , Klein, Robyn S. , Jack, Clifford R. , Bateman, Randall J. , McDade, Eric , Benzinger, Tammie L.S. , Cruchaga, Carlos

Alzheimer's & Dementia | January 9, 2025 | Volume: 20 | Issue: S2 | Pages: No page available

10.1002/alz.084578 Get It

AbstractBackgroundAutosomal dominant Alzheimer disease (ADAD) is characterized by genetic mutations affecting the beta‐amyloid (Aβ) pathway. However, vascular and immune factors play important roles which are not completely understood. Understanding the function of the neurovascular unit (NVU) comprised of neurons, glial cells, and vasculature, at different disease stages appears ideal to developing and evaluating therapeutics. Omics approaches can inform NVU changes and their disease associations.MethodsCSF proteomic data using the Somalogic® platform was generated from 485 participants in the DIAN study, who also had PiB‐PET and MRI assessing Aβ burden, white matter hyperintensity (WMH), and cerebral microhemorrhage (CMH). From previously published AD studies, we identified 33 NVU‐associated proteins with corresponding Somalogic aptamers (Figure 1). We used Principal Component Analysis (PCA) on participants with complete data (n=262, 166 mutation‐carriers and 96 non‐carriers) to find groups of proteins associated with mutation status and disease stage as measured with estimated year to symptom onset (EYO), PiB‐PET, and clinical status. Linear‐mixed effect models and two‐part zero‐inflated negative binomial mixed models further evaluated the link between significant principal components (PCs) and WMH and CMH, respectively. Models accounted for age, APOE‐e4 status, sex, and education.ResultsThe first ten PCs explained >60% of the variance in NVU‐related protein levels (Figure 2A) with only PC5 (4.8%) associated with mutation*EYO, suggesting relationship with ADAD‐specific disease progression (***p<0.0001, Figure 2B). While asymptomatic PiB‐negative individuals were not significantly different from non‐carriers, asymptomatic PiB‐positive individuals had higher PC5 scores than non‐carriers and symptomatic individuals scored still higher (**p<0.005, ***p<0.0001, Figure 2C). The main proteins composing PC5 were: neurofilament light‐chain, angiopoietin‐2, SMOC1, LRP1, E‐selectin, and sTREM2, suggesting strong association with proinflammatory glial response from neuronal injury (Figure 2D). PC5 was also associated with WMH volumes (*p<0.05, Figure 3A) and with CMH count in participants with CMH (**p<0.005, Figure 3B).ConclusionsThis PCA approach indicates that some groups of NVU‐associated proteins are related with mutation status and disease stage, and that they are differentially associated with features of ADAD such as white matter integrity as measured by WMH volume. Weighted Correlation Network Analysis will be of interest to further understand these associations.Funding: K01AG080123, RF1‐AG044546, UF1AG032438
CSF proteomics related to the neurovascular unit are associated with white matter hyperintensity volumes and cerebral microhemorrhages in autosomal dominant Alzheimer disease
Shen, Yuanyuan , Chen, Charles D., Strain, Jeremy F. , Shirzadi, Zahra , Chen, Gengsheng , Massoumzadeh, Parinaz , Lu, Ruijin , Chhatwal, Jasmeer P. , Perrin, Richard J. , Joseph‐Mathurin, Nelly , Friedrichsen, Karl A. , McCullough, Austin , Gordon, Brian A. , Llibre‐Guerra, Jorge J. , Hassenstab, Jason , Ibanez, Laura , Schultz, Stephanie A. , Morris, John C. , An, Hongyu , Xiong, Chengjie , Klein, Robyn S. , Jack, Clifford R. , Bateman, Randall J. , McDade, Eric , Benzinger, Tammie L.S. , Cruchaga, Carlos

Alzheimer's & Dementia | January 9, 2025 | Volume: 20 | Issue: S9 | Pages: No page available

10.1002/alz.093619 Get It

AbstractBackgroundAutosomal dominant Alzheimer disease (ADAD) is characterized by genetic mutations affecting the beta‐amyloid (Aß) pathway. However, vascular and immune factors play important roles which are not completely understood. Understanding the function of the neurovascular unit (NVU) comprised of neurons, glial cells, and vasculature, at different disease stages appears ideal to developing and evaluating therapeutics. Omics approaches can inform NVU changes and their disease associations.MethodsCSF proteomic data using the Somalogic® platform was generated from 485 participants in the DIAN study, who also had PiB‐PET and MRI assessing Aß burden, white matter hyperintensity (WMH), and cerebral microhemorrhage (CMH). From previously published AD studies, we identified 33 NVU‐associated proteins with corresponding Somalogic aptamers (Figure 1). We used Principal Component Analysis (PCA) on participants with complete data (n = 262, 166 mutation‐carriers and 96 non‐carriers) to find groups of proteins associated with mutation status and disease stage as measured with estimated year to symptom onset (EYO), PiB‐PET, and clinical status. Linear‐mixed effect models and two‐part zero‐inflated negative binomial mixed models further evaluated the link between significant principal components (PCs) and WMH and CMH, respectively. Models accounted for age, APOE‐e4 status, sex, and education.ResultsThe first ten PCs explained >60% of the variance in NVU‐related protein levels (Figure 2A) with only PC5 (4.8%) associated with mutation*EYO, suggesting relationship with ADAD‐specific disease progression (***p<0.0001, Figure 2B). While asymptomatic PiB‐negative individuals were not significantly different from non‐carriers, asymptomatic PiB‐positive individuals had higher PC5 scores than non‐carriers and symptomatic individuals scored still higher (**p<0.005, ***p<0.0001, Figure 2C). The main proteins composing PC5 were: neurofilament light‐chain, angiopoietin‐2, SMOC1, LRP1, E‐selectin, and sTREM2, suggesting strong association with proinflammatory glial response from neuronal injury (Figure 2D). PC5 was also associated with WMH volumes (*p<0.05, Figure 3A) and with CMH count in participants with CMH (**p<0.005, Figure 3B).ConclusionsThis PCA approach indicates that some groups of NVU‐associated proteins are related with mutation status and disease stage, and that they are differentially associated with features of ADAD such as white matter integrity as measured by WMH volume. Weighted Correlation Network Analysis will be of interest to further understand these associations. Funding: K01AG080123, RF1‐AG044546, UF1AG032438
Short-term and long-term prognoses in AChR-Ab positive very-late-onset myasthenia gravis patients
Xie, Nairong , Liu, Qing , Wang, Yaye , Di, Li , Zhu, Wenjia , Wen, Xinmei , Shen, Xin‐Ming , Da, Yuwei , Da, Yuwei , Wen, Qi, Liu, Haoran , Jiang, Yuting , Lü, Yan , Di, Li, Wang, Min , Zhang, Xuxiang

Therapeutic Advances in Neurological Disorders | January 8, 2025 | Volume: 18 | Issue: No issue available | Pages: No page available

10.1177/17562864241309793 | PMID 39803329 Get It

Background: Very-late-onset myasthenia gravis (VLOMG) refers to myasthenia gravis (MG) with onset at age 65 or older. Current research on VLOMG prognosis remains limited, especially regarding factors influencing outcomes. Objectives: To identify the clinical factors that affect the short- and long-term prognosis of MG patients with an onset age ⩾65 years. Design: This was a single-center, retrospective cohort study of AChR-ab positive VLOMG patients, classified into two subgroups based on age of onset: sub-very-late-onset MG (S-VLOMG, onset age ⩾65 and <75 years), and super-late-onset MG (SLOMG, onset age ⩾75 years). Methods: A total of 93 patients were included, including 75 in the S-VLOMG group and 18 in the SLOMG group. Clinical, therapeutic, and prognosis data were reviewed, and the Cox regression model was used to identify factors influencing short- and long-term prognosis. Results: Patient characteristics were well balanced between the groups. Overall, 49.5% of patients achieved minimal symptom expression (MSE) within 6 months and 86% within 24 months. There was no significant difference between the groups in the proportion achieving MSE at 6 months ( p = 0.635) or 24 months ( p = 0.714). The median time to achieve MSE was also comparable between the S-VLOMG and SLOMG groups (199.0 days vs 280.5 days, p = 0.463). Low baseline MG-ADL score and steroid therapy were associated with better short-term prognosis ( p = 0.007 and p = 0.002, respectively). For long-term prognosis, baseline bulbar and limb involvement, time to treatment initiation, and use of immunosuppressants were significant factors ( p = 0.025, p = 0.004, p = 0.025, and p < 0.0001, respectively). There were no significant differences in side effects or drug withdrawal rates between two groups. Conclusion: This study demonstrated that AChR-ab positive VLOMG patients have a favorable prognosis and responded well to medication, with age and comorbidities showing no significant impact.
Discovery of PRMT5 N-Terminal TIM Barrel Ligands from Machine-Learning-Based Virtual Screening
Shen, Zhihang , Seabra, Gustavo , Brant, Jason O. , Lewis, Ben , Li, Chenglong , Deleyrolle, Loic , Li, Chenglong , Shirlekar, Kalyanee , Deleyrolle, Loic P.

ACS Omega | January 2, 2025 | Volume: 10 | Issue: 1 | Pages: 1156-1163

10.1021/acsomega.4c08661 | PMID 39829491 Get It

Implementation of Universal Germline Genetic Testing Into Standard of Care for Patients With Prostate Cancer: The Time Is Now
Shore, Neal D. , Nielsen, Sarah M. , Esplin, Edward D. , Antonarakis, Emmanuel S. , Barata, Pedro C. , Beltran, Himisha , Bryce, Alan H. , Cookson, Michael S. , Crawford, E. David , Dorff, Tanya B. , George, Daniel J. , Heath, Elisabeth I. , Hussain, Maha , McKay, Rana R. , Ross, Ashley E. , Shen, John , Sieber, Paul , Armstrong, Andrew J. , Antonarakis, Emmanuel S. , Shore, Neal , Beer, Tomasz M , Beltran, Himisha , Bryce, Alan H , Dorff, Tanya , George, Daniel J , Heath, Elisabeth I , Helfand, Brian T. , Hussain, Maha H A , McKay, Rana R , Morgans, Alicia K , Morris, Michael J , Ross, Ashley E , Sartor, A Oliver , Wise, David R , Armstrong, Andrew J , Barata, Pedro , Antonarakis, Emmanuel S , Esplin, Edward D , Antonarakis, Emmanuel S , Beer, Tomasz M. , Morgans, Alicia K. , Morris, Michael J. , Paller, Channing J. , Sartor, Oliver , Smith, Matthew Ryan

JCO Oncology Practice | December 19, 2024 | Volume: 21 | Issue: 6 | Pages: 747-753

10.1200/op-24-00626 | PMID 39700441 Get It

Indications for and implications of germline genetic testing (GGT) in patients with prostate cancer have expanded over the past decade, particularly related to precision therapies and management. GGT has become the standard of care for many cancers such as breast, ovarian, colorectal, pancreatic, and metastatic prostate cancer, and it is imperative that patients be offered timely and equitable access to testing as it can inform patient-physician shared decision making for management of the current cancer as well as anticipatory guidance for disease progression. Additionally, GGT guides screening for and prevention of secondary malignancies for the patient and cascade testing for at-risk family members. Here, we present data supporting the notion that clinicians should offer all patients with prostate cancer the opportunity to undergo comprehensive GGT for pathogenic germline variants known to be associated with familial cancer and/or known to have implications for treatment and management.