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Ji, Yuan

0000-0003-4712-5567

Mayo Clinic

University of Chicago

Citations 2

A Roadmap for Developing Plasma Diagnostic and Prognostic Biomarkers of Cerebral Cavernous Angioma With Symptomatic Hemorrhage (CASH)
Girard, Romuald , Stadnik, Agnieszka , Shenkar, Robert , Hobson, Nicholas , Romanos, Sharbel , Srinath, Abhinav , Moore, Thomas , Lightle, Rhonda , Shkoukani, Abdallah , Akers, Amy , Christoforidis, Gregory A. , Lee, Cornelia , Piedad, Kristina , Greenberg, Steven M. , Kim, Helen , Flemming, Kelly D. , Awad, Issam A. , Girard, Romuald , Shenkar, Robert , Flemming, Kelly D , Kim, Helen , Li, Yan , Hobson, Nicholas, Carroll, Timothy , Koenig, James I. , Ji, Yuan

Neurosurgery | October 1, 2020 | Volume: 88 | Issue: 3 | Pages: 686-697

10.1093/neuros/nyaa478 Get It

Abstract BACKGROUND Cerebral cavernous angioma (CA) is a capillary microangiopathy predisposing more than a million Americans to premature risk of brain hemorrhage. CA with recent symptomatic hemorrhage (SH), most likely to re-bleed with serious clinical sequelae, is the primary focus of therapeutic development. Signaling aberrations in CA include proliferative dysangiogenesis, blood-brain barrier hyperpermeability, inflammatory/immune processes, and anticoagulant vascular domain. Plasma levels of molecules reflecting these mechanisms and measures of vascular permeability and iron deposition on magnetic resonance imaging are biomarkers that have been correlated with CA hemorrhage. OBJECTIVE To optimize these biomarkers to accurately diagnose cavernous angioma with symptomatic hemorrhage (CASH), prognosticate the risk of future SH, and monitor cases after a bleed and in response to therapy. METHODS Additional candidate biomarkers, emerging from ongoing mechanistic and differential transcriptome studies, would further enhance the sensitivity and specificity of diagnosis and prediction of CASH. Integrative combinations of levels of plasma proteins and characteristic micro-ribonucleic acids may further strengthen biomarker associations. We will deploy advanced statistical and machine learning approaches for the integration of novel candidate biomarkers, rejecting noncorrelated candidates, and determining the best clustering and weighing of combined biomarker contributions. EXPECTED OUTCOMES With the expertise of leading CA researchers, this project anticipates the development of future blood tests for the diagnosis and prediction of CASH to clinically advance towards precision medicine. DISCUSSION The project tests a novel integrational approach of biomarker development in a mechanistically defined cerebrovascular disease with a relevant context of use, with an approach applicable to other neurological diseases with similar pathobiologic features.
Using computer‐extracted image phenotypes from tumors on breast magnetic resonance imaging to predict breast cancer pathologic stage
Drukker, Karen , Li, Hui , Bonaccio, Ermelinda, Zuley, Margarita L. , Ganott, Marie A., Net, Jose , Sutton, Elizabeth J. , Brandt, Kathleen R. , Conzen, Suzanne D. , Li, Lan , Zhu, Yitan , Jaffe, C. Carl, Huang, Erich P. , Freymann, John , Kirby, Justin , Morris, Elizabeth A. , Burnside, Elizabeth S. , Whitman, Gary J. , Ji, Yuan , Giger, Maryellen , Drukker, Karen

Cancer | November 30, 2015 | Volume: 122 | Issue: 5 | Pages: 748-757

10.1002/cncr.29791 Get It

BACKGROUNDThe objective of this study was to demonstrate that computer‐extracted image phenotypes (CEIPs) of biopsy‐proven breast cancer on magnetic resonance imaging (MRI) can accurately predict pathologic stage.METHODSThe authors used a data set of deidentified breast MRIs organized by the National Cancer Institute in The Cancer Imaging Archive. In total, 91 biopsy‐proven breast cancers were analyzed from patients who had information available on pathologic stage (stage I, n = 22; stage II, n = 58; stage III, n = 11) and surgically verified lymph node status (negative lymph nodes, n = 46; ≥ 1 positive lymph node, n = 44; no lymph nodes examined, n = 1). Tumors were characterized according to 1) radiologist‐measured size and 2) CEIP. Then, models were built that combined 2 CEIPs to predict tumor pathologic stage and lymph node involvement, and the models were evaluated in a leave‐1‐out, cross‐validation analysis with the area under the receiver operating characteristic curve (AUC) as the value of interest.RESULTSTumor size was the most powerful predictor of pathologic stage, but CEIPs that captured biologic behavior also emerged as predictive (eg, stage I and II vs stage III demonstrated an AUC of 0.83). No size measure was successful in the prediction of positive lymph nodes, but adding a CEIP that described tumor “homogeneity” significantly improved discrimination (AUC = 0.62; P = .003) compared with chance.CONCLUSIONSThe current results indicate that MRI phenotypes have promise for predicting breast cancer pathologic stage and lymph node status. Cancer 2016;122:748–757. © 2015 American Cancer Society.