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Singh, Yashbir

0000-0002-5848-7072

Mayo Clinic

Mayo Clinic

Citations 32

Topology-Aware GAN (TopoGAN): Transforming Medical Imaging Advances
Patel, Hrishi, Farrelly, Colleen , Rozenblit, Jennifer , Deepa, Deepa, Singh, Yashbir , Chaudhary, Ashok , Atalls, Shadi, Singh, Yashbir , Hathaway, Quincy A , Himeur, Yassine , Mansoor, Wathiq

2023 Tenth International Conference on Social Networks Analysis, Management and Security (SNAMS) | January 2, 2024 | Volume: No volume available | Issue: No issue available | Pages: 1-3

10.1109/snams60348.2023.10375442 Get It

The Critical Role of Homotopy Continuation in Robotic-Assisted Surgery - Future Perspective
Singh, Yashbir , Farrelly, Colleen , Carrubba, Aakriti R. , Deepa, Deepa, Chaudhary, Ashok , Atalls, Shadi, Singh, Yashbir , Hathaway, Quincy A , Friebe, Michael , Mansoor, Wathiq , Himeur, Yassine

2023 Tenth International Conference on Social Networks Analysis, Management and Security (SNAMS) | January 2, 2024 | Volume: No volume available | Issue: No issue available | Pages: 1-5

10.1109/snams60348.2023.10375412 Get It

Current Topological and Machine Learning Applications for Bias Detection in Text
Farrelly, Colleen , Singh, Yashbir , Carlsson, Gunnar , Doretto, Gianfranco , Atalls, Shadi, Singh, Yashbir , Hathaway, Quincy A , Choudhary, Ashok, Paul, Rahul , Himeur, Yassine , Mansoor, Wathiq

2023 6th International Conference on Signal Processing and Information Security (ICSPIS) | December 12, 2023 | Volume: No volume available | Issue: No issue available | Pages: 190-195

10.1109/icspis60075.2023.10343824 Get It

A Comprehensive Review on AI-Enabled Models for Parkinson’s Disease Diagnosis
Dixit, Shriniket, Bohre, Khitij, Singh, Yashbir , Himeur, Yassine , Mansoor, Wathiq , Atalla, Shadi , Srinivasan, Kathiravan , Singh, Yashbir

Electronics | February 6, 2023 | Volume: 12 | Issue: 4 | Pages: 783

10.3390/electronics12040783 Get It

Parkinson’s disease (PD) is a devastating neurological disease that cannot be identified with traditional plasma experiments, necessitating the development of a faster, less expensive diagnostic instrument. Due to the difficulty of quantifying PD in the past, doctors have tended to focus on some signs while ignoring others, primarily relying on an intuitive assessment scale because of the disease’s characteristics, which include loss of motor control and speech that can be utilized to detect and diagnose this disease. It is an illness that impacts both motion and non-motion functions. It takes years to develop and has a wide range of clinical symptoms and prognoses. Parkinson’s patients commonly display non-motor symptoms such as sleep problems, neurocognitive ailments, and cognitive impairment long before the diagnosis, even though scientists have been working to develop designs for diagnosing and categorizing the disease, only noticeable defects such as movement patterns, speech, or writing skills are offered in this paper. This article provides a thorough analysis of several AI-based ML and DL techniques used to diagnose PD and their influence on developing additional research directions. It follows the guidelines of Preferred Reporting Items for Systematic reviews and Meta-Analyses extension for Scoping Reviews (PRISMA-ScR). This review also examines the current state of PD diagnosis and the potential applications of data-driven AI technology. It ends with a discussion of future developments, which aids in filling critical gaps in the current Parkinson’s study.
To predict the left ventricular endocardial Scar tissue pattern using Radon descriptor-based machine learning
Singh, Yashbir , Deepa, Deepa, Singh, Yashbir , Mansoor, Wathiq , Atalla, Shadi , Paul, Rahul

No container title available | September 22, 2022 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.21203/rs.3.rs-2073569/v1 Get It

Abstract Objective: Scar tissue is an identified cause for the development of malignant ventricular arrhythmias in patients of myocardial infarction, which ultimately leads to cardiac death, a fatal outcome. We aim to evaluate the left ventricular endocardial Scar tissue pattern using Radon descriptor-based machine learning. We performed automated LV segmentation to find the LV endocardial wall, performed morphological operations, and marked the region of the scar tissue on the endocardial wall of LV. Motivated by a Radon descriptor-based machine learning approach; the patches of 17 patients from CT images of the heart were used and categorized into “endocardial Scar tissue” and “normal tissue” groups. The ten feature vectors are extracted from patches using Radon descriptors and fed into a traditional machine learning model. Results: The decision tree has shown the best performance with 98.07% accuracy. This study is the first attempt to provide a Radon transform-based machine learning method to distinguish patterns between “endocardial Scar tissue” and “normal tissue” groups. Our proposed research method could be potentially used in advanced interventions.
Mitigating Bias in Radiology Machine Learning: 2. Model Development
Zhang, Kuan , Khosravi, Bardia , Vahdati, Sanaz , Faghani, Shahriar , Nugen, Fred , Rassoulinejad-Mousavi, Seyed Moein , Moassefi, Mana, Jagtap, Jaidip , Singh, Yashbir , Rouzrokh, Pouria , Jagtap, Jaidip Manikrao M, Erickson, Bradley J , Khosravi, Bardia , Rouzrokh, Pouria , Faghani, Shahriar , Singh, Yashbir , Nugen, Fred , Moassefi, Mana , Erickson, Bradley J.

Radiology: Artificial Intelligence | August 24, 2022 | Volume: 4 | Issue: 5 | Pages: No page available

10.1148/ryai.220010 Get It

Mitigating Bias in Radiology Machine Learning: 1. Data Handling
Rouzrokh, Pouria , Khosravi, Bardia , Faghani, Shahriar , Moassefi, Mana, Vera-Garcia, Diana V. , Singh, Yashbir , Zhang, Kuan , Conte, Gian Marco , Erickson, Bradley J. , Khosravi, Bardia , Conte, Gian Marco , Erickson, Bradley J , Rouzrokh, Pouria , Faghani, Shahriar , Singh, Yashbir , Vera-Garcia, Diana V , Moassefi, Mana

Radiology: Artificial Intelligence | August 24, 2022 | Volume: 4 | Issue: 5 | Pages: No page available

10.1148/ryai.210290 Get It

Radon descriptor-based machine learning using CT images to predict the fat tissue on left atrium in the heart
Deepa, Deepa, Singh, Yashbir , Hu, Wei-Chih, Wang, Ming Chen, Hu, Weichih , Singh, Yashbir

Proceedings of the Institution of Mechanical Engineers, Part H: Journal of Engineering in Medicine | July 6, 2022 | Volume: 236 | Issue: 8 | Pages: 1232-1237

10.1177/09544119221110657 Get It

Heart disease has a higher fatality rate than any other disease. Increased Atrial fat on the left atrium has been discovered to cause Atrial Fibrillation (AF) in most patients. AF can put one’s life at risk and eventually lead to death. AF might worsen over time; therefore, it is crucial to have an early diagnosis and treatment. To evaluate the left atrium fat tissue pattern using Radon descriptor-based machine learning. This study developed a bridge between the Radon transform framework and machine learning to distinguish two distinct patterns. Motivated by a Radon descriptor-based machine learning approach, the patches of eight patients from CT images of the heart were used and categorized into “epicardial fat tissue” and “nonfat tissue” groups. The 10 feature vectors are extracted from each big patch using Radon descriptors and then fed into a traditional machine learning model. The results show that the proposed methodology discriminates between fat tissues and nonfat tissues clearly. KNN has shown the best performance with 96.77% specificity, 98.28% sensitivity, and 97.50% accuracy. To our knowledge, this study is the first attempt to provide a Radon transform-based machine learning method to distinguish between fat tissue and nonfat tissue on the left atrium. Our proposed research method could be potentially used in advanced interventions.
Genome-wide expression reveals potential biomarkers in breast cancer bone metastasis
Singh, Yashbir , Subbarao, Naidu , Jaimini, Abhinav, Hathaway, Quincy A. , Kunovac, Amina , Swarup, Vishnu , Singh, Himanshu Narayan , Erickson, Bradley, Swarup, Vishnu , Singh, Himanshu Narayan , Singh, Yashbir , Hathaway, Quincy A , Erickson, Bradley J.

Journal of Integrative Bioinformatics | April 7, 2022 | Volume: 19 | Issue: 3 | Pages: No page available

10.1515/jib-2021-0041 Get It

Abstract Breast cancer metastases are most commonly found in bone, an indication of poor prognosis. Pathway-based biomarkers identification may help elucidate the cellular signature of breast cancer metastasis in bone, further characterizing the etiology and promoting new therapeutic approaches. We extracted gene expression profiles from mouse macrophages from the GEO dataset, GSE152795 using the GEO2R webtool. The differentially expressed genes (DEGs) were filtered by log2 fold-change with threshold 1.5 (FDR < 0.05). STRING database and Enrichr were used for GO-term analysis, miRNA and TF analysis associated with DEGs. Autodock Vienna was exploited to investigate interaction of anti-cancer drugs, Actinomycin-D and Adriamycin. Sensitivity and specificity of DEGs was assessed using receiver operating characteristic (ROC) analyses. A total of 61 DEGs, included 27 down-regulated and 34 up-regulated, were found to be significant in breast cancer bone metastasis. Major DEGs were associated with lipid metabolism and immunological response of tumor tissue. Crucial DEGs, Bcl3, ADGRG7, FABP4, VCAN, and IRF4 were regulated by miRNAs, miR-497, miR-574, miR-138 and TFs, CCDN1, STAT6, IRF8. Docking analysis showed that these genes possessed strong binding with the drugs. ROC analysis demonstrated Bcl3 is specific to metastasis. DEGs Bcl3, ADGRG7, FABP4, IRF4, their regulating miRNAs and TFs have strong impact on proliferation and metastasis of breast cancer in bone tissues. In conclusion, present study revealed that DEGs are directly involved in of breast tumor metastasis in bone tissues. Identified genes, miRNAs, and TFs can be possible drug targets that may be used for the therapeutics. However, further experimental validation is necessary.