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Singh, Yashbir

0000-0002-5848-7072

Mayo Clinic

Mayo Clinic

Citations 32

Enhancing Brain Tumor Detection: A GAN Benchmark for MRI Data Augmentation
Elhanashi, Abdussalam, Essahraui, Siham , Saponara, Sergio, Zheng, Qinghe, Almutairi, Nawal, Singh, Yashbir, Ali, Farzana, Faghani, Shahriar, Unal, Orhan, Younis, Khaled, Kuanar, Shiba, Elhanashi, Abdussalam , Saponara, Sergio, Almutairi, Nawal , Singh, Yashbir , Ali, Farzana , Kuanar, Shiba

2025 IEEE International Conference on Advanced Healthcare Systems (ICAHS) | August 3, 2026 | Volume: No volume available | Issue: No issue available | Pages: 1-6

10.1109/icahs66950.2025.11552967 Get It

38AI Starter: Medical Image Analysis for Cholangiocarcinoma Projects
Singh, Yashbir, Wei, Yujia, Salehi, Sara, Erickson, Bradley J, Andersen, JB , Singh, Yashbir , Salehi, Sara , Gores, Gregory J. , Erickson, Bradley J.

The Oncologist | June 23, 2026 | Volume: 31 | Issue: Supplement_1 | Pages: No page available

10.1093/oncolo/oyag205.039 Get It

Abstract Background & Objectives Cholangiocarcinoma (CCA) is a rare and aggressive malignancy of the bile ducts characterized by complex imaging patterns, high inter-reader variability, and limited subspecialty expertise. Despite the critical importance of early detection for improving patient outcomes, most artificial intelligence (AI) tools developed for radiology have focused on other organ systems, leaving CCA largely underserved. Furthermore, clinicians with relevant domain expertise frequently lack the programming background required to participate meaningfully in AI development. This work aimed to create an accessible, educational AI framework “AI Starter” designed to empower radiologists and clinicians to initiate medical image analysis projects for CCA without requiring extensive coding knowledge. Methods A structured, end-to-end AI pipeline was introduced covering the key stages of image acquisition, preprocessing, segmentation, feature extraction, and predictive modeling. Open-source frameworks, specifically MONAI and PyTorch, were employed to ensure reproducibility and accessibility. Transfer learning strategies were incorporated to address the challenge of limited CCA-specific training datasets. The pipeline was designed with modular components to reduce technical barriers and accommodate users across varying levels of computational experience. Results Radiologists and clinicians were able to successfully engage with and deploy AI tools for CCA imaging analysis using this framework. Transfer learning demonstrably improved model performance under data-limited conditions, and the open-source implementation supported reproducible research workflows. Key challenges identified included scanner variability, segmentation instability, feature instability, and model overfitting, all of which were transparently mapped within the pipeline. Conclusion The AI Starter framework offers a practical and educational entry point for the CCA community including basic scientists and clinicians to meaningfully engage with and understand AI-driven imaging analysis.
Graph Neural Networks for Medical Imaging Analysis and Biological Data: Integrating Topology, Geometry, Radiomics, and Generative AI
Singh, Yashbir , Himeur, Yassine , Farrelly, Colleen M., Kadzue, Peguy Kem-Meka Tiotsop , Rozenblit, Jennifer Z. , Kunovac, Amina , Pappas, Isabelle C., Choudhary, Ashok , Salehi, Sara , Atalla, Shadi , Hathaway, Quincy A. , Singh, Yashbir , Hathaway, Quincy A , Salehi, Sara , Rozenblit, Jennifer , Farrelly, Colleen

Bioengineering | June 3, 2026 | Volume: 13 | Issue: 6 | Pages: 638

10.3390/bioengineering13060638 Get It

Graph neural networks (GNNs) are increasingly used for medical imaging analysis and biological data modeling, where the integration of radiomics, topology, geometry, and generative artificial intelligence (AI) may improve representation learning from medical images and related biomedical data. Across the reviewed literature, GNNs show particular value for modeling spatial relationships, multimodal interactions, graph-structured biological networks, and non-Euclidean imaging features that are difficult to capture using conventional convolutional architectures alone. Topology- and geometry-aware approaches further expand this capability by encoding multi-scale structure, higher-order relationships, curvature, geodesic organization, and equivariant spatial priors. Hybrid graph–transformer models and generative graph methods represent emerging directions for modeling long-range dependencies, augmenting scarce datasets, supporting synthetic pretraining, and improving representation learning in low-label or heterogeneous biomedical settings. However, clinical translation remains limited by variability in graph construction, limited external validation, computational cost, scalability constraints, interpretability challenges, and uncertainty regarding the biological realism of synthetic data. Overall, this review highlights that GNN-based medical imaging analysis is most likely to advance when graph construction is biologically justified, model performance is evaluated across diverse clinical cohorts, and technical gains are paired with transparent validation, interpretability, and implementation strategies.
A 10-Year Comprehensive, Single-Center, Retrospective Analysis on Juxtapleural Nodules: Insights into Classification and Risk
Pappas, Isabelle C., Hathaway, Quincy A. , Gbate, Hubert A., Singh, Yashbir , Ghotbi, Elena , Knollmann, Friedrich , Barbosa, Eduardo Mortani, Donuru, Achala , Xu, Dongming, Knollmann, Friedrich D , Singh, Yashbir , Hathaway, Quincy A , Gbate, Hubert, Ghotbi, Elena

Diagnostics | May 28, 2026 | Volume: 16 | Issue: 11 | Pages: 1663

10.3390/diagnostics16111663 Get It

Background/Objectives: Juxtapleural and perifissural nodules are commonly encountered on thoracic imaging, are typically presumed benign, and are often considered to represent intrapulmonary lymph nodes. We evaluated the prevalence, clinical context, and management of juxtapleural nodules over a 10-year period and to assess factors associated with concern for malignancy. Methods: In this retrospective, single-center study, radiology reports from 1 January 2015 to 31 December 2024, were queried using natural language processing to identify examinations containing terminology consistent with juxtapleural nodules. After exclusion of duplicate encounters, 85,435 unique patient encounters were analyzed. Reports were further filtered to identify cases with imaging concern for malignancy and recommendations for follow-up or intervention (N = 659). Clinical characteristics, imaging modality, and prior malignancy history were compared using appropriate statistical tests. Results: Among 85,435 unique encounters, 659 patients (<1%) had juxtapleural nodules considered concerning for malignancy. These patients were older (68 vs. 64 years, p < 0.001), more frequently imaged with PET/CT (8% vs. 5%, p < 0.001), and more likely to be evaluated in inpatient settings (16% vs. 12%, p < 0.001). Of the cohort with a juxtapleural nodule considered concerning for malignancy by imaging criteria, 360 patients (55%) had a prior history of malignancy. In these patients, nodules were more commonly identified in outpatient settings (70% vs. 43%, p < 0.001) and on routine imaging (94% vs. 86%, p < 0.001). Representative cases demonstrated that malignant nodules may mimic benign perifissural morphology on initial imaging. Conclusions: Although the vast majority of reported juxtapleural nodules did not prompt malignancy-directed evaluation, a small subset of cases (approximately 0.8%), particularly in patients with prior malignancy, were interpreted as sufficiently concerning to warrant follow-up imaging or intervention. Because pathologic confirmation and standardized long-term outcome adjudication were not available for all patients, these findings should be interpreted as reflecting real-world radiologist concern and management patterns rather than a definitive malignancy rate.
Foundation Models for Volumetric Medical Imaging: Opportunities, Challenges, and Future Directions
Guo, Junlin , Singh, Yashbir, Younis, Khaled, Kuanar, Shiba , Faghani, Shahriar, Farina, Eduardo Moreno Judice De Mattos, Huo, Yuankai, Maleki, Farhad, Singh, Yashbir , Faghani, Shahriar , Huo, Yuankai , Maleki, Farhad , Faghani, Shahriar , Singh, Yashbir , Maleki, Farhad , Ghosh, Tapotosh , Sheikhi, Farnaz , Farina, Eduardo Moreno Júdice de Mattos

Electronics | March 17, 2026 | Volume: 15 | Issue: 6 | Pages: 1245

10.3390/electronics15061245 Get It

Foundation models, known as the large-scale, pretrained models capable of generalizing across diverse tasks, have significantly advanced the field of medical image analysis. While most early applications focused on 2D modalities, the unique challenges and opportunities associated with volumetric medical imaging have recently attracted growing interest. This study provides a comprehensive overview of the current landscape of foundation models tailored for volumetric medical image analysis, with a focus on CT, MRI, and PET imaging. We examine key components of these models, including 3D architectures, training strategies, and supported modalities. In addition, we highlight their contribution to major clinical tasks such as classification and prediction, segmentation, image registration, quality enhancement, and visual question answering. Critical challenges of these models, including high computational cost, limited and less diverse 3D datasets, and domain adaptation, are discussed alongside the promising solutions and future research directions. By synthesizing recent advances in volumetric foundation models and outlining key technical and clinical challenges, this review provides a thorough roadmap toward the development of scalable, generalizable, and clinically applicable AI systems for volumetric medical images.
AI Do’s and Don’ts in Cancer Imaging: Remembering the Patient Behind the Pixel
Zandieh, Ghazal , Singh, Yashbir, DeSilvio, Thomas , Flannery, Brennan , Singh, Yashbir , Singh, Yashbir

Radiology: Imaging Cancer | February 27, 2026 | Volume: 8 | Issue: 2 | Pages: No page available

10.1148/rycan.260002 Get It

Agentic AI and Large Language Models in Radiology: Opportunities and Hallucination Challenges
Salehi, Sara , Singh, Yashbir , Horst, Kelly K. , Hathaway, Quincy A. , Erickson, Bradley J. , Erickson, Bradley J , Horst, Kelly , Singh, Yashbir , Hathaway, Quincy A , Salehi, Sara

Bioengineering | November 26, 2025 | Volume: 12 | Issue: 12 | Pages: 1303

10.3390/bioengineering12121303 Get It

The field of radiology is experiencing rapid adoption of large language models (LLMs), yet their tendency to generate hallucinations (plausible but incorrect information) remains a significant barrier to trust. This comprehensive review evaluates emerging agentic artificial intelligence (AI) approaches, including multi-agent role-based systems, retrieval-augmented generation (RAG), and uncertainty quantification, to assess their potential for reducing hallucinations in radiology workflows. Evidence from 2024 to 2025 demonstrates that agentic AI can improve diagnostic accuracy and reduce error rates, though these methods remain computationally demanding and lack comprehensive clinical validation. Multi-agent frameworks enable cross-validation through role-based specialization and systematic workflow orchestration, while RAG strategies enhance accuracy by grounding responses in verified medical literature. Within multi-agent systems, uncertainty quantification enables agents to communicate confidence levels to one another, allowing them to appropriately weigh each other’s contributions during collaborative analysis. While multi-agent frameworks and RAG strategies show significant promise, practical deployment will require careful integration with human oversight, robust evaluation metrics tailored to medical imaging tasks, and regulatory adaptation to ensure safe clinical use in diverse patient populations and imaging modalities.
Reply: From risk alert to decision support: Enhancing the clinical value of the AI model for cholangiocarcinoma
Eaton, John E. , Singh, Yashbir , Erickson, Bradley J. , Gores, Gregory J.

Hepatology | November 11, 2025 | Volume: 83 | Issue: 4 | Pages: E118-E119

10.1097/hep.0000000000001611 Get It

Beyond Single Systems: How Multi-Agent AI Is Reshaping Ethics in Radiology
Salehi, Sara , Singh, Yashbir , Habibi, Parnian, Erickson, Bradley J. , Erickson, Bradley J , Singh, Yashbir , Salehi, Sara , Habibi, Parnian

Bioengineering | October 13, 2025 | Volume: 12 | Issue: 10 | Pages: 1100

10.3390/bioengineering12101100 Get It

Radiology is undergoing a paradigm shift from traditional single-function AI systems to sophisticated multi-agent networks capable of autonomous reasoning, coordinated decision-making, and adaptive workflow management. These agentic AI systems move beyond simple pattern recognition to encompass complex radiological workflows including image analysis, report generation, clinical communication, and care coordination. While multi-agent radiological AI promises enhanced diagnostic accuracy, improved workflow efficiency, and reduced physician burden, it simultaneously amplifies the long-standing “black box” problem. Traditional explainable AI methods, which are adequate for understanding isolated diagnostic predictions, fail when applied to multi-step reasoning processes involving multiple specialized agents coordinating across imaging interpretation, clinical correlation, and treatment planning. This paper examines how agentic AI systems in radiology create “compound opacity” layers of inscrutability from agent interactions and distributed decision-making processes. We analyze the autonomy–transparency paradox specific to radiological practice, where increasing AI capability directly conflicts with interpretability requirements essential for clinical trust and regulatory oversight. Through examination of emerging multi-agent radiological workflows, we propose frameworks for responsible implementation that preserve both diagnostic innovation and the fundamental principles of medical transparency and accountability.
Advancing Early Detection of Chronic Obstructive Pulmonary Disease Using Generative AI
Hathaway, Quincy A. , Singh, Yashbir , Singh, Yashbir , Hathaway, Quincy A

Radiology: Artificial Intelligence | August 27, 2025 | Volume: 7 | Issue: 5 | Pages: No page available

10.1148/ryai.250555 Get It