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Bolan, Candice W.

https://orcid.org/0000-0002-9847-3599

Mayo Clinic

Mayo Clinic

Citations 27

Phase-Aware Vision Transformers Enable Prediction of Hepatocellular Carcinoma Recurrence After Liver Transplantation
Arun, Nishanth, Weston, Alexander, Islam, Fatima , Bolan, Candice, Toskich, Beau, Lopez, Fernando Gil, Galeotti, John, Bolan, Candice W. , Gil-López, Fernando, Galeotti, John

2026 IEEE 23rd International Symposium on Biomedical Imaging (ISBI) | May 20, 2026 | Volume: No volume available | Issue: No issue available | Pages: 1-5

10.1109/isbi61048.2026.11515550 Get It

Uncertainty-Aware Explainable AI for Pancreatic Cysts: Identifying Deep Learning Vulnerabilities and Ensuring Safe Clinical Triage in IPMN Management
Aktas, Halil Ertugrul , Bejar, Andrea Mia, Hong, Ziliang , Hendrix, Rutger , Pan, Hongyi, Keles, Elif, Bol, Fergan , Taktak, Yavuz , Topel, Cagdas, Tur, Yalcin, Zhang, Zheyuan, Chatterjee, Neil , Velichko, Yuri, Schoots, Ivo G, Bruno, Marco J, Huang, Chenchan , Gonda, Tamas, Medetalibeyoglu, Alpay, Kartal, Gulbiz Dagoglu, Erturk, Sukru Mehmet, Zhao, Lili, Bolan, Candice W. , Miller, Frank H, Wallace, Michael B, Keswani, Rajesh N, Bagci, Ulas, Bolan, Candice, Durak, Görkem , Bejar, Andrea Mia, Keleş, Elif , Velichko, Yury , Spampinato, Concetto , Schoots, Ivo G. , Bruno, Marco J. , Gonda, Tamas A. , Erturk, Sukru Mehmet, Miller, Frank H., Wallace, Michael B. , Keswani, Rajesh N. , Bağcı, Ulaş

No container title available | March 22, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.21203/rs.3.rs-9096790/v1 Get It

Abstract Despite growing interest in AI for pancreatic cyst management, no prior study has systematically investigated how lesion characteristics influence model behavior or provided a comprehensive explainability analysis in IPMN malignancy risk stratification. We present the first multi-center study integrating explainable AI with uncertainty quantification to evaluate how cyst type, size, and location affect deep learning performance in IPMN malignancy prediction. Our retrospective study analyzed 170 IPMNs from seven centers using a radiomics-deep learning fusion model. Cases were stratified by dysplasia grade, IPMN type, size, and location; with model interpretability assessed using SHAP, LIME, Grad-CAM, and uncertainty quantification. Overall accuracy was 67.1%, with model uncertainty lower for correct versus incorrect predictions (0.72 vs 0.78, p < 0.001). On subgroup analysis: Low-Risk lesion accuracy exceeded High-Risk (81.3% vs. 42.9%, p < 0.001), BD accuracy was inversely correlated with cyst size while MD remained stable, and body and whole-pancreas cysts stratified more accurately than tail cysts (77.8%, 76.6% vs. 47.8%). AI models face significant, previously uncharacterized performance drops when evaluating complex high-risk IPMNs. Our study shows that integrating uncertainty quantification can successfully flag unreliable predictions, enabling a selective-prediction framework where clinicians can confidently rely on AI for low-risk, low-uncertainty lesions while deferring high-uncertainty cases to expert review.
Cyst-X: AI-Powered Pancreatic Cancer Risk Prediction from Multicenter MRI in Centralized and Federated Learning
Bağcı, Ulaş , Pan, Hongyi , Keleş, Elif , Seyithanoğlu, Deniz, Zhang, Zheyuan , Aktaş, Halil , Bejar, Andrea , Hong, Ziliang , Taktak, Yavuz , Kartal, Gulbiz, Cebeci, Timurhan , Gonzalez, Maria , Zhao, Lili , Agarunov, Emil, Salanitri, Federica Proietto , Tiwari, Pallavi , Bruno, Marco J. , Huang, Chenchang, Bolan, Candice W. , Gonda, Tamas A. , Miller, Frank, Keswani, Rajesh N. , Zhao, Lili , Bagci, Ulas , Durak, Görkem , Medetalibeyoğlu, Alpay , Ertürk, Şükrü Mehmet , Gonzalez, Maria, Velichko, Yury , Spampinato, Concetto , Tiwari, Pallavi , Xu, Ziyue , Jambawalikar, Sachin , Schoots, Ivo G. , Huang, Chenchang, Wallace, Michael B.

No container title available | December 8, 2025 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.21203/rs.3.rs-7236860/v1 Get It

Abstract Pancreatic cancer, projected to become the second-deadliest malignancy in Western societies by 2030, requires urgent innovations in early detection and risk stratification. Intraductal papillary mucinous neoplasms (IPMNs) represent critical precursor lesions, but current clinical guidelines demonstrate suboptimal accuracy in malignancy prediction, leading to either unnecessary surgeries or missed opportunities for early intervention. In this paper, we present Cyst-X, an artificial intelligence (AI) framework that accurately predicts IPMN malignant transformation using multicenter magnetic resonance imaging (MRI) data. Unlike most previous approaches that rely on computed tomography (CT), our method capitalizes on the superior soft tissue contrast of MRI, allowing for more precise identification of subtle imaging biomarkers. We developed and validated deep learning models on 723 T1-weighted and 738 T2-weighted MRI scans from 764 patients among seven international institutions, demonstrating significantly superior performance (AUC=0.82) compared to current clinical (Kyoto) guidelines (AUC=0.75) and expert radiologists. AI-based imaging features correlate strongly with clinically recognized malignancy markers, providing potential biologically relevant insights. This approach holds promise to significantly refine clinical decision-making, reduce unnecessary surgeries, and better identify high-risk IPMN patients for timely intervention. Our approach integrates a novel pancreas segmentation network with robust classification models that identify subtle imaging biomarkers associated with malignancy risk. Importantly, we demonstrate that these models retain high performance in a privacy-preserving federated learning setting, where institutions collaboratively train AI models without exchanging patient data to address key regulatory and ethical barriers. We publicly release the Cyst-X dataset--the first large-scale, multi-center pancreatic cyst MRI collection--to accelerate research in this field. This study addresses a critical clinical need while establishing technical foundations for privacy-preserving AI in radiology that could transform pancreatic cancer management through earlier intervention and reduced unnecessary procedures. The dataset can be accessed at https://osf.io/74vfs/, and the source code for our deep learning segmentation and classification models is available at https://github.com/NUBagciLab/Cyst-X.
Is there a place for deceased donor liver transplantation for colorectal metastases in the United States? Feasibility of a protocol utilizing machine perfusion
Jones, Jeremy , Taner, C. Burcin , O’Donnell, Connor, Inabinett, Samantha R, Boyle, Ashton, Majeed, Umair , Bolan, Candice W. , Toskish, Beau, Merchea, Amit , Harnois, Denise M. , Toskich, Beau B. , Fischer, Rebecca, Inabinett, Samantha, Majeed, Umair , Bolan, Candice, Toskich, Beau , Merchea, Amit , Harnois, Denise , Taner, Burcin , Jones, Jeremy C , O’Donnell, Connor, Fischer, Rebecca, Boyle, Ashton W.R. , Yang, Liu , Croome, Kristopher P.

Liver Transplantation | September 17, 2025 | Volume: 32 | Issue: 2 | Pages: 144-152

10.1097/lvt.0000000000000727 Get It

Despite European colorectal liver metastases (CRLM) transplant trials having been performed entirely using deceased donor liver transplant (DDLT), there has been speculation about whether similar results can be achieved in the United States, given the lack of MELD score prioritization. A formal transplant protocol for unresectable CRLM was implemented in our center at the start of 2022 with the plan to utilize DDLT. Between 2022 and 2025, 86 patients with CRLM were referred to our program, and 19 patients underwent a formal transplant evaluation. Median time from listing until transplant was 31 days (range 3–115 d). Median allocation MELD was 8 (range 6–15). The donor livers were from DCDs, older donors, or National Share livers, which had been declined by all other centers. All but 2 of the cases underwent advanced perfusion. There were no cases of primary nonfunction, postreperfusion syndrome, acute kidney injury, hepatic artery thrombosis, or ischemic cholangiopathy. The length of stay for the median posttransplant was 5 days. Graft and patient survival were 100% at the time of maximal follow-up. Recurrence developed in 3 recipients (25.0%), 1 of whom was treated and has no evidence of disease. These findings support the viability of DDLT for CRLM using advanced perfusion, contingent on strict protocol adherence. Center-specific waitlist dynamics must inform the choice between DDLT and living donor liver transplant (LDLT).
Automated Prediction of Radiological Protocols Using Retrieval Augmented Generation
Testagrose, Conrad , Korfiatis, Panagiotis , Kline, Timothy L. , Benfield, Justin D., Cook, Cole J. , Merkel, Peggy S., Demirer, Mutlu , Bolan, Candice W. , Erdal, Barbaros S. , Benfield, Justin D., Merkel, Peggy S., White, Richard

No container title available | September 17, 2025 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.21203/rs.3.rs-7623430/v1 Get It

Abstract Radiological protocol selection is a critical but time-consuming step in clinical workflow, requiring radiologists to match patient indications with the appropriate MRI or CT protocol. Manual selection can be prone to delays or potential errors, and automated approaches must contend with substantial data imbalance, site-specific variation, and evolving nomenclature. We investigated whether a large language model (LLM) can support reliable protocol selection at scale and whether retrieval-augmented generation (RAG) offers operational advantages over direct fine-tuning. Using 498,228 patient reports collected across three Mayo Clinic sites (Arizona, Florida, and Rochester) spanning six radiological divisions, we trained site-specific Llama 3.2 3B models for use with and without retrieval augmentation. Division-scoped Facebook AI Similarity Search (FAISS) indexes constructed from procedure and diagnosis text were used to supply contextual evidence in the RAG framework. Both fine-tuned and RAG-augmented models achieved strong performance across sites, with F1 scores of 0.88–0.90. RAG matched or modestly trailed direct fine-tuning overall but delivered consistent gains in specific divisions (e.g., musculoskeletal imaging). Importantly, the RAG model introduced abstention behavior (Not Enough Information), which concentrated in linguistically diverse divisions and provided an interpretable signal of uncertainty. These findings suggest that RAG-based models are viable for division-scoped protocol selection and offer practical advantages. Retrieval indexes can be refreshed far more easily and with fewer resources than retraining LLMs, enabling continual adaptation to evolving clinical workflows. Future prospective deployment will evaluate real-time accuracy, agreement with practitioners, and the role of abstention as a safety mechanism in clinical decision support.
Multi-center evaluation of radiomics and deep learning to stratify malignancy risk of IPMNs
Bejar, Andrea Mia, Gonzalez, Maria , Hong, Ziliang , Aktas, Halil Ertugrul , Zhang, Zheyuan , Pan, Hongyi, Jozwiak, Zeynep Sue, Bol, Fergan , Zhao, Lili , Kartal, Gulbiz Dagoglu, Agarunov, Emil, Bruno, Marco J. , Huang, Chenchang, Gonda, Tamas A. , Bolan, Candice W. , Keswani, Rajesh N. , Tiwari, Pallavi , Bolan, Candice, Gonzalez, María Jaramillo, Durak, Görkem , Keleş, Elif , Pan, Hongyi , Jozwiak, Zeynep Sue, Chen, Chao , Spampinato, Concetto , Medetalibeyoğlu, Alpay , Ertürk, Şükrü Mehmet , Velichko, Yury , Xu, Ziyue , Jambawalikar, Sachin , Schoots, Ivo G. , Huang, Chenchang, Miller, Frank H. , Wallace, Michael B. , Tiwari, Pallavi , Bağcı, Ulaş

No container title available | May 30, 2025 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.21203/rs.3.rs-6622868/v1 Get It

Abstract Distinguishing high-risk intraductal papillary mucinous neoplasms (IPMNs), pancreatic cysts requiring surgery, from low-risk lesions remains a clinical challenge, often resulting in unnecessary procedures due to limited specificity of current methods. While radiomics and deep learning (DL) have been explored for pancreatic cancer, cyst-level malignancy risk stratification of IPMNs remains untapped. We conducted a multi-institutional study (seven centers, 359 T2W MRI images) to assess the feasibility of AI for predicting IPMN dysplasia grade using cyst-level image features. We developed and compared 2D and 3D radiomics-only, deep learning (DL)-only, and radiomics-DL fusion models, using expert radiologist scoring as a baseline reference. Model performance was evaluated using held-out test data. The radiomics-DL fusion model showed the highest discriminatory ability on the test set (AUC 0.692), outperforming the radiomics-only model (AUC 0.665). Expert accuracy varied widely (37.4%-66.7%). The fusion model integrating deep learning and radiomics features from routine T2W MRI (AUC: 0.692) demonstrates potential for objective, cyst-level risk stratification of IPMNs in a multi-center cohort, outperforming both radiomics-only models and expert radiologists. While performance requires improvement for standalone clinical use, this approach offers a scalable, non-invasive method to potentially improve diagnostic accuracy and reduce unnecessary surgical interventions.
Adaptive Aggregation Weights for Federated Segmentation of Pancreas MRI
Pan, Hongyi , Zhang, Zheyuan , Taktak, Yavuz , Keleş, Elif , Aktas, Halil Ertugrul , Velichko, Yury , Schoots, Ivo G. , Bruno, Marco J. , Keswani, Rajesh N. , Bolan, Candice W. , Gonda, Tamas A. , GORRins, Michael G., Velichko, Yuri S , Durak, Görkem , Medetalibeyoğlu, Alpay , Spampinato, Concetto , Tiwari, Pallavi , Wallace, Michael B. , Xu, Ziyue , Bağcı, Ulaş

2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI) | May 12, 2025 | Volume: No volume available | Issue: No issue available | Pages: 1-5

10.1109/isbi60581.2025.10981148 Get It

Multi-Phase Attention for Early Stage Hepatocellular Carcinoma Segmentation from Contrast Enhanced Liver MRI
Arun, Nishanth , Weston, Alexander D. , Bolan, Candice W. , Toskich, Beau , López, Fernando Gil, Galeotti, John , Gil-López, F. Santoyo

2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI) | May 12, 2025 | Volume: No volume available | Issue: No issue available | Pages: 1-5

10.1109/isbi60581.2025.10980806 Get It

IPMN Risk Assessment Under Federated Learning Paradigm
Pan, Hongyi , Hong, Ziliang , Keleş, Elif , Aktas, Halil Ertugrul , Taktak, Yavuz , Medetalibeyoğlu, Alpay , Zhang, Zheyuan , Velichko, Yury , Schoots, Ivo G. , Bruno, Marco J. , Tiwari, Pallavi , Bolan, Candice W. , Gonda, Tamas A. , Miller, Frank, Keswani, Rajesh N. , Miller, Frank H. , Miller, Frank H , Velichko, Yuri S , Durak, Görkem , Spampinato, Concetto , Tiwari, Pallavi , Wallace, Michael B. , Xu, Ziyue , Bağcı, Ulaş

2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI) | May 12, 2025 | Volume: No volume available | Issue: No issue available | Pages: 1-5

10.1109/isbi60581.2025.10980733 Get It