Back to Authors

Bartholmai, Brian J

0000-0001-7834-6579

Mayo Clinic

Division of Radiology, Mayo Clinic, Rochester, MN 55905, USA.

Citations 38

Artificial Intelligence in Radiology: A Call for Thoughtful Application
Driver, Christine , Bartholmai, Brian J. , Greenberg, Alexandra J. , Driver, C Noelle, Bowles, Bradley S, Bartholmai, Brian J , Driver, C. Noelle, Bowles, Bradley

Clinical and Translational Science | October 30, 2019 | Volume: 13 | Issue: 2 | Pages: 216-218

10.1111/cts.12704 Get It

Radio-Frequency Identification Specimen Tracking to Improve Quality in Anatomic Pathology
Norgan, Andrew P. , Simon, Kurt E., Feehan, Barbara A., Saari, Lynn L., Doppler, Joseph M., Welder, G. Scott, Sedarski, John A., Yoch, Christopher T., Comfere, Nneka I. , Martin, John A. , Bartholmai, Brian J. , Reichard, R. Ross , Bartholmai, Brian J , Norgan, Andrew P

Archives of Pathology & Laboratory Medicine | June 27, 2019 | Volume: 144 | Issue: 2 | Pages: 189-195

10.5858/arpa.2019-0011-oa Get It

Context.— Preanalytic errors, including specimen labeling errors and specimen loss, occur frequently during specimen collection, transit, and accessioning. Radio-frequency identification tags can decrease specimen identification and tracking errors through continuous and automated tracking of specimens. Objective.— To implement a specimen tracking infrastructure to reduce preanalytic errors (specimen mislabeling or loss) between specimen collection and laboratory accessioning. Specific goals were to decrease preanalytic errors by at least 70% and to simultaneously decrease employee effort dedicated to resolving preanalytic errors or investigating lost specimens. Design.— A radio-frequency identification specimen-tracking system was developed. Major features included integral radio-frequency identification labels (radio-frequency identification tags and traditional bar codes in a single printed label) printed by point-of-care printers in collection suites; dispersed radio-frequency identification readers at major transit points; and systems integration of the electronic health record, laboratory information system, and radio-frequency identification tracking system to allow for computerized physician order entry driven label generation, specimen transit time tracking, interval-based alarms, and automated accessioning. Results.— In the 6-month postimplementation period, 6 mislabeling events occurred in collection areas using the radio-frequency identification system, compared with 24 events in the 6-month preimplementation period (75% decrease; P = .001). In addition, the system led to the timely recovery of 3 lost specimens. Labeling expenses were decreased substantially in the transition from high-frequency to ultrahigh frequency radio-frequency identification tags. Conclusions.— Radio-frequency identification specimen tracking prevented several potential specimen-loss events, decreased specimen recovery time, and decreased specimen labeling errors. Increases in labeling/tracking expenses for the system were more than offset by time savings and loss avoidance through error mitigation.
Lung US Surface Wave Elastography in Interstitial Lung Disease Staging
Zhou, Boran , Bartholmai, Brian J. , Kalra, Sanjay , Osborn, Thomas G. , Zhang, Xiaoming , Zhang, Xiaoming , Bartholmai, Brian J

Radiology | March 5, 2019 | Volume: 291 | Issue: 2 | Pages: 479-484

10.1148/radiol.2019181729 Get It

Automated Parenchymal Pattern Analysis of Treatment Responses in Pulmonary Alveolar Proteinosis
McCarthy, Cormac , Bartholmai, Brian J. , Woods, Jason C. , McCormack, Francis X. , McCormack, Francis X , Bartholmai, Brian J , Trapnell, Bruce C.

American Journal of Respiratory and Critical Care Medicine | March 1, 2019 | Volume: 199 | Issue: 9 | Pages: 1151-1152

10.1164/rccm.201810-1918im Get It

High-Resolution Chest Computed Tomography Imaging of the Lungs
Bartlett, David J. , Koo, Chi Wan , Bartholmai, Brian J. , Weaver, Jayse , Halaweish, Ahmed F., Bartholmai, Brian J , Rajendran, Kishore , Leng, Shuai , McCollough, Cynthia H. , Fletcher, Joel G.

Investigative Radiology | November 21, 2018 | Volume: 54 | Issue: 3 | Pages: 129-137

10.1097/rli.0000000000000524 Get It

Objectives The aim of this study was to evaluate if a high-resolution photon-counting detector computed tomography (PCD-CT) system with a 1024×1024 matrix reconstruction can improve the visualization of fine structures in the lungs compared with conventional high-resolution CT (HRCT). Materials and Methods Twenty-two adult patients referred for clinical chest HRCT (mean CTDI vol, 13.58 mGy) underwent additional dose-matched PCD-CT (mean volume CT dose index, 13.37 mGy) after written informed consent. Computed tomography images were reconstructed at a slice thickness of 1.5 mm and an image increment of 1 mm with our routine HRCT reconstruction kernels (B46 and Bv49) at 512 and 1024 matrix sizes for conventional energy-integrating detector (EID) CT scans. For PCD-CT, routine B46 kernel and an additional sharp kernel (Q65, unavailable for EID) images were reconstructed at 1024 matrix size. Two thoracic radiologists compared images from EID and PCD-CT noting the highest level bronchus clearly identified in each lobe of the right lung, and rating bronchial wall conspicuity of third- and fourth-order bronchi. Lung nodules were also compared with the B46/EID/512 images using a 5-point Likert scale. Statistical analysis was performed using a Wilcoxon signed rank test with a P < 0.05 considered significant. Results Compared with B46/EID/512, readers detected higher-order bronchi using B46/PCD/1024 and Q65/PCD/1024 images for every lung lobe (P < 0.0015), but in only the right middle lobe for B46/EID/1024 (P = 0.007). Readers were able to better identify bronchial walls of the third- and fourth-order bronchi better using the Q65/PCD/1024 images (mean Likert scores of 1.1 and 1.5), which was significantly higher compared with B46/EID/1024 or B46/PCD/1024 images (mean difference, 0.8; P < 0.0001). The Q65/PCD/1024 images had a mean nodule score of 1 ± 1.3 for reader 1, and −0.1 (0.9) for reader 2, with one reader having improved nodule evaluation scores for both PCD kernels (P < 0.001), and the other reader not identifying any increased advantage over B46/EID/1024 (P = 1.0). Conclusions High-resolution lung PCD-CT with 1024 image matrix reconstruction increased radiologists' ability to visualize higher-order bronchi and bronchial walls without compromising nodule evaluation compared with current chest CT, creating an opportunity for radiologists to better evaluate airway pathology.
Assessment of Interstitial Lung Disease Using Lung Ultrasound Surface Wave Elastography
Clay, Ryan , Bartholmai, Brian J. , Zhou, Boran , Karwoski, Ronald A., Peikert, Tobias, Osborn, Thomas G. , Rajagopalan, Srinivasan, Kalra, Sanjay , Zhang, Xiaoming , Karwoski, Ronald, Zhang, Xiaoming , Bartholmai, Brian J

Journal of Thoracic Imaging | June 5, 2018 | Volume: 34 | Issue: 5 | Pages: 313-319

10.1097/rti.0000000000000334 Get It

Purpose: Optimal strategies to detect early interstitial lung disease (ILD) are unknown. ILD is frequently subpleural in distribution and affects lung elasticity. Lung ultrasound surface wave elastography (LUSWE) is a noninvasive method of quantifying superficial lung tissue elastic properties. In LUWSE a handheld device applied at the intercostal space vibrates the chest at a set frequency, and the lung surface wave velocity is measured by an ultrasound probe 5 mm away in the same intercostal space. We explored LUWSE’s ability to detect ILD and correlated LUSWE velocity with physiological, quantitative, and visual radiologic features of subjects with known ILD and of healthy controls. Materials and Methods: Seventy-seven subjects with ILD, mostly caused by connective tissue disease, and 19 healthy controls were recruited. LUSWE was performed on all subjects in 3 intercostal lung regions bilaterally. Comparison of LUSWE velocities pulmonary function testing, visual assessment, and quantitative analysis of recent computed tomographic imaging with Computer-Aided Lung Informatics for Pathology Evaluation and Rating (CALIPER) software. Results: Sonographic velocities were higher in all lung regions for cases, with the greatest difference in the lateral lower lung. Median velocity in m/s was 5.84 versus 4.11 and 5.96 versus 4.27 (P<0.00001) for cases versus controls, left and right lateral lower lung zones, respectively. LUSWE velocity correlated negatively with vital capacity and positively with radiologist and CALIPER-detected interstitial abnormalities. Conclusions: LUSWE is a safe and noninvasive technique that shows high sensitivity to detect ILD and correlated with clinical, physiological, radiologic, and quantitative assessments of ILD. Prospective study in detecting ILD is indicated.
Effect of Recombinant Human Pentraxin 2 vs Placebo on Change in Forced Vital Capacity in Patients With Idiopathic Pulmonary Fibrosis
Raghu, Ganesh , Blink, Bernt van den, Hamblin, Mark J., Brown, Alison, Ho, Lawrence , Wijsenbeek, Marlies , Vašáková, Martina , Pesci, Alberto, Antin‐Ozerkis, Danielle, Meyer, Keith C. , Kreuter, Michael , Santin-Janin, H., Mulder, Geert-Jan, Bartholmai, Brian J. , Gupta, Renu, Richeldi, Luca , Bartholmai, Brian, Bartholmai, Brian J , Golden, Jeffrey A , Richeldi, Luca

JAMA | May 20, 2018 | Volume: 319 | Issue: 22 | Pages: 2299

10.1001/jama.2018.6129 Get It

Predicting Outcomes in Idiopathic Pulmonary Fibrosis Using Automated Computed Tomographic Analysis
Jacob, Joseph , Bartholmai, Brian J. , Rajagopalan, Srinivasan, Moorsel, Coline H.M. van , Es, Hendrik W. van, Beek, Frouke T. van, Struik, Marjolijn H. L., Kokosi, Maria , Egashira, Ryoko , Brun, Anne‐Laure , Nair, Arjun , Walsh, Simon , Cross, Gary , Barnett, Joseph , Lauretis, Angelo De, Judge, Eoin P., Desai, Sujal R. , Karwoski, Ronald A., Ourselin, Sébastien , Renzoni, Elisabetta , Maher, Toby M. , Altmann, André , Wells, Athol U. , Karwoski, Ronald, Bartholmai, Brian J , Maher, Toby , Egashira, Ryoko

American Journal of Respiratory and Critical Care Medicine | April 23, 2018 | Volume: 198 | Issue: 6 | Pages: 767-776

10.1164/rccm.201711-2174oc Get It

Abstract Rationale Quantitative computed tomographic (CT) measures of baseline disease severity might identify patients with idiopathic pulmonary fibrosis (IPF) with an increased mortality risk. We evaluated whether quantitative CT variables could act as a cohort enrichment tool in future IPF drug trials. Objectives To determine whether computer-derived CT measures, specifically measures of pulmonary vessel–related structures (VRSs), can better predict functional decline and survival in IPF and reduce requisite sample sizes in drug trial populations. Methods Patients with IPF undergoing volumetric noncontrast CT imaging at the Royal Brompton Hospital, London, and St. Antonius Hospital, Utrecht, were examined to identify pulmonary function measures (including FVC) and visual and computer-derived (CALIPER [Computer-Aided Lung Informatics for Pathology Evaluation and Rating] software) CT features predictive of mortality and FVC decline. The discovery cohort comprised 247 consecutive patients, with validation of results conducted in a separate cohort of 284 patients, all fulfilling drug trial entry criteria. Measurements and Main Results In the discovery and validation cohorts, CALIPER-derived features, particularly VRS scores, were among the strongest predictors of survival and FVC decline. CALIPER results were accentuated in patients with less extensive disease, outperforming pulmonary function measures. When used as a cohort enrichment tool, a CALIPER VRS score greater than 4.4% of the lung was able to reduce the requisite sample size of an IPF drug trial by 26%. Conclusions Our study has validated a new quantitative CT measure in patients with IPF fulfilling drug trial entry criteria—the VRS score—that outperformed current gold standard measures of outcome. When used for cohort enrichment in an IPF drug trial setting, VRS threshold scores can reduce a required IPF drug trial population size by 25%, thereby limiting prohibitive trial costs. Importantly, VRS scores identify patients in whom antifibrotic medication prolongs life and reduces FVC decline.
Likelihood of pulmonary hypertension in patients with idiopathic pulmonary fibrosis and emphysema
Jacob, Joseph , Bartholmai, Brian J. , Rajagopalan, Srinivasan , Karwoski, Ronald A., Nair, Arjun , Walsh, Simon, Barnett, Joseph , Cross, Gary , Judge, Eoin P., Kokosi, Maria , Renzoni, Elisabetta , Maher, Toby M. , Wells, Athol U. , Karwoski, Ronald, Bartholmai, Brian J , Maher, Toby

Respirology | December 13, 2017 | Volume: 23 | Issue: 6 | Pages: 593-599

10.1111/resp.13231 Get It

ABSTRACT Background and objective This study evaluated whether patients with combined pulmonary fibrosis and emphysema (CPFE) have an increased likelihood of pulmonary hypertension (PHT) when compared with idiopathic pulmonary fibrosis (IPF) patients without emphysema. Methods Two consecutive IPF populations having undergone transthoracic echocardiography were examined ( n = 223 and n = 162). Emphysema and interstitial lung disease (ILD) extent were quantified visually; ILD extent was also quantified by a software tool, CALIPER. Echocardiographic criteria categorized PHT risk. Results The prevalence of an increased PHT likelihood was 29% and 31% in each CPFE cohort. Survival at 12 months was 60% across both CPFE cohorts with no significantly worsened outcome identified when compared with IPF patients without emphysema. Using logistic regression models in both cohorts, total computed tomography (CT) disease extent (ILD and emphysema) predicted the likelihood of PHT. After adjustment for total disease extent, CPFE had no stronger association with PHT likelihood than IPF patients without emphysema. Conclusion Our findings indicate that the reported association between CPFE and PHT is explained by the summed baseline CT extents of ILD and emphysema. Once baseline severity is taken into account, CPFE is not selectively associated with a malignant microvascular phenotype, when compared with IPF patients without emphysema.