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Zheng, Jamie

0009-0000-1514-2536

Mayo Clinic

Mayo Clinic

Citations 3

The Renal Micro-RNA Expression Profile of Pkd1 RC/RC Mice Changes Longitudinally with the Progression of the Disease
Sharma, Nalin , Zheng, Jamie , Alsawaf, Yahya , Singha, Santu K., Xu, Xiaohong , Zhang, Youwen, Vučković, Ivan , Macura, Slobodan , Hanna, Christian , Hogan, Marie C. , Eirin, Alfonso, Sharma, Nalin , Eirin, Alfonso , Irazabal, Maria V , Macura, Slobodan I , Hanna, Christian , Vuckovic, Ivan , Alsawaf, Yahya , Hogan, Marie C , Eirin, Alfonso , Irazabal, María V.

Kidney360 | January 2, 2026 | Volume: 7 | Issue: 6 | Pages: 1212-1226

10.34067/kid.0000001108 Get It

Key Points Experimental autosomal dominant polycystic kidney disease is associated with longitudinal changes in the kidney micro-RNA and mRNA profiles. Alterations in cellular transport, a feature of CKD, and a common biological process within polycystic kidney disease models and human autosomal dominant polycystic kidney disease, is present from early stages. Early versus late micro-RNA expression changes in autosomal dominant polycystic kidney disease could be targeted for a more tailored therapeutic intervention in the disease. Background Autosomal dominant polycystic kidney disease (ADPKD) is characterized by the progressive development and enlargement of bilateral kidney cysts, which often leads to kidney failure. This study comprehensively characterized the expression profile of micro-RNAs (miRNAs) and their target genes in Pkd1 RC/RC mice and further compared them with other murine models of polycystic kidney disease (PKD) and a model of CKD and individuals with ADPKD. Methods Pkd1 RC/RC and wild-type (WT) mice ( n =10 each, five males and five females) were studied at 1, 6, and 12 months. At each time point, kidney volume was determined in vivo (magnetic resonance imaging), followed by ex vivo histomorphometric analyses. In randomly selected Pkd1 RC/RC and WT mouse kidneys ( n =5/genotype, at 1 and 12 months), miRNA-sequencing (seq) was performed, followed by mRNA-seq, integrated (miRNA-seq/mRNA-seq analysis), and functional analysis of miRNA target genes. Venn diagrams were constructed to identify overlapping and novel differentially expressed (DE) miRNAs in Pkd1 RC/RC and other commonly used murine models of PKD, diabetic kidney disease, and individuals with ADPKD. Results miRNA-seq analysis identified 41 and 181 miRNAs DE in Pkd1 RC/RC versus WT kidneys at 1 and 12 months, respectively, which were confirmed by quantitative PCR. Target genes of miRNAs DE in Pkd1 RC/RC at early stages encoded for proteins mainly implicated in cell proliferation and α -ketoglutarate ( α -KG) transport, whereas those DE at late stages encoded for transport proteins involved in proinflammatory and metabolic processes. Urine α -KG concentration ( 1 H nuclear magnetic resonance spectroscopy), its fractional excretion, and tissue levels were higher in Pkd1 RC/RC during the entire course of the disease and associated with decreased protein expression of α -KG transporters sodium-coupled dicarboxylate transporter 3 and organic anion transporter 1. We further identified common DE miRNAs among murine models of PKD, diabetic kidney disease, and previous reports in individuals with ADPKD, as well as several novel miRNAs DE in early and late Pkd1 RC/RC kidneys, which have not been previously reported in either other murine models of PKD or patients with ADPKD. Conclusions Our study demonstrates that the renal miRNA expression profile changes longitudinally with the progression of the disease and might suggest that the post-transcriptional regulation of α -KG transport could represent a novel early feature of the disease.
A brief harvesting-freezing delay significantly alters the kidney metabolome and leads to false positive and negative results
Alsawaf, Yahya , Maksimovic, Igor , Zheng, Jamie , Zhang, Song , Vučković, Ivan , Dzeja, Petras P. , Macura, Slobodan , Irazabal, María V. , Dzeja, Petras , Macura, Slobodan I , Irazabal, Maria V , Vuckovic, Ivan , Alsawaf, Yahya

American Journal of Physiology-Renal Physiology | August 29, 2024 | Volume: 327 | Issue: 5 | Pages: F697-F711

10.1152/ajprenal.00131.2024 Get It

Our study shows that a brief harvesting-freezing delay associated with organ collection and freezing can significantly alter the kidney metabolic profile of both male and female wild-type and a genetic model of chronic kidney disease. Importantly, given that the effect of this delay differs among genotypes, it is not safe to assume that equally delaying harvesting-freezing in wild-type and polycystic kidney disease kidneys adequately controls this effect, ultimately leading to false positive and negative results among different renal diseases.
End of induction positron emission tomography complete response (PET‐CR) as a surrogate for progression‐free survival in previously untreated follicular lymphoma
Dixon, Jesse G. , Dimier, Natalie , Nielsen, Tina, Zheng, Jamie , Marcus, Robert, Evens, Andrew M. , Blum, Kristie A. , Shi, Qian , Blum, Kristie A , Shi, Qian , Evens, Andrew M , Dixon, Jesse G , Morschhauser, Franck , Federico, Massimo

British Journal of Haematology | May 2, 2022 | Volume: 198 | Issue: 2 | Pages: 333-337

10.1111/bjh.18217 Get It

SummaryProgression‐free survival (PFS) has been the regulatory primary end‐point for recent phase III trials in first‐line follicular lymphoma (FL), but requires prolonged follow‐up. Complete response (CR) at 30 months after initiation of induction treatment was validated as surrogate end‐point for PFS. Our objective was to further evaluate surrogacy of CR measured by [18F] fluorodeoxyglucose (FDG) positron emission tomography (PET) imaging at the end of induction (EoI). Individual patient data were analysed from 1505 patients from five randomized trials. Trial‐level surrogacy examining the association between treatment effects on EoI‐PET‐CR and PFS was evaluated using linear regression () and bivariate Copula () models. Although EoI‐PET‐CR strongly predicted PFS at a prognostic level, the trial‐level assessment did not show strong correlation (, confidence interval [CI]: 0.20–0.88; , CI: 0.0–0.82). The high uncertainty in estimation was possibly due to the small number of trials and the population of patients with available PET data. Maintenance therapy affecting PFS beyond induction treatment, but not EoI‐PET‐CR end‐point, may have distorted the association between treatment effects. However, there will probably be a number of additional trials approaching completion with available PET response data. Refined evaluation of PET‐CR based surrogate end‐points is still warranted.