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Rong, Yi

https://orcid.org/0000-0002-2620-1893

Mayo Clinic

Mayo Clinic in Arizona

Citations 49

AAPM Task Group Report 306: Quality control and assurance for tomotherapy: An update to Task Group Report 148
Chen, Quan , Burmeister, Jay , Chao, Edward, Corradini, Nathan, Followill, D , Liu, An , Qi, X. Sharon , Shi, Hai-Rong, Smilowitz, Jennifer B., Rong, Yi , Li, X. Allen , Shi, Hairong, Smilowitz, Jennifer B.

Medical Physics | December 13, 2022 | Volume: 50 | Issue: 3 | Pages: No page available

10.1002/mp.16150 Get It

AbstractSince the publication of AAPM Task Group (TG) 148 on quality assurance (QA) for helical tomotherapy, there have been many new developments on the tomotherapy platform involving treatment delivery, on‐board imaging options, motion management, and treatment planning systems (TPSs). In response to a need for guidance on quality control (QC) and QA for these technologies, the AAPM Therapy Physics Committee commissioned TG 306 to review these changes and make recommendations related to these technology updates. The specific objectives of this TG were (1) to update, as needed, recommendations on tolerance limits, frequencies and QC/QA testing methodology in TG 148, (2) address the commissioning and necessary QA checks, as a supplement to Medical Physics Practice Guidelines (MPPG) with respect to tomotherapy TPS and (3) to provide risk‐based recommendations on the new technology implemented clinically and treatment delivery workflow. Detailed recommendations on QA tests and their tolerance levels are provided for dynamic jaws, binary multileaf collimators, and Synchrony motion management. A subset of TPS commissioning and QA checks in MPPG 5.a. applicable to tomotherapy are recommended. In addition, failure mode and effects analysis has been conducted among TG members to obtain multi‐institutional analysis on tomotherapy‐related failure modes and their effect ranking.
Technical note: Characterization of novel iterative reconstructed cone beam CT images for dose tracking and adaptive radiotherapy on L‐shape linacs
Lim, Rebecca , Penoncello, Gregory P. , Hobbis, Dean , Harrington, Daniel P. , Penoncello, Gregory , Rong, Yi

Medical Physics | August 29, 2022 | Volume: 49 | Issue: 12 | Pages: 7715-7732

10.1002/mp.15943 Get It

AbstractBackgroundCone‐beam computed tomography (CBCT) allows for patient setup and positioning, and potentially dose verification or adaptive replanning prior to each treatment delivery. Poor CBCT image quality due to scatter artifacts and patient motion has been a major limiting factor. A new image reconstruction algorithm was recently clinically implemented for improving image quality through iterative reconstruction (iCBCT).PurposeThis study aims to characterize iCBCT image quality, establish image value (HU)‐to‐relative electron density (RED) calibration curves for dose calculation, and assess the dosimetric accuracy for different anatomical sites.Material and methodsBoth conventional CBCT and iCBCT scans were acquired from a Varian TrueBeam On‐Board Imager system. A Catphan 604 phantom was scanned to compare image quality between the traditional Feldkamp–Davis–Kress (FDK) and novel iterative reconstruction techniques. Computerized Imaging Reference Systems (CIRS) electron density phantom was used to construct site‐specific HU‐RED curves corresponding to various scan settings. The CIRS Dynamic Thorax phantom, Rando pelvis phantom, and BrainLab head phantom were used for assessing dosimetric accuracy calculated on iCBCT images, compared to that on traditional FDK‐based CBCT images. All phantoms were scanned on a computed tomography (CT) to obtain baseline HU values for comparison.ResultsTest results obtained from Catphan showed statistically significant improvement with iCBCT, compared to FDK CBCT. Average HU differences from the baseline CT values were improved to within ±30 HU for iCBCT, compared to FDK CBCT for phantom studies. Dose calculated on iCBCT for both phantoms and patient cases directly using baseline HU‐RED calibration from CT showed 0.5%–2.0% accuracy from the baseline dose calculated on CT, which is comparable to doses calculated using site‐specific HU‐RED calibration curves.ConclusioniCBCT provides improved image quality, improved HU accuracy compared to CT baseline, and has potential to provide online dose verification as part of the adaptive radiotherapy workflow directly using the baseline HU‐RED calibration curve from CT.
Assessment of dose‐volume histogram precision for five clinical systems
Pepin, M. , Penoncello, Gregory P. , Brom, Kevin M. , Gustafson, Jon M., Long, Kenneth M., Santos, Luis E. Fong de los, Shiraishi, Satomi , Pepin, Mark D, Fong de Los Santos, Luis E, Pepin, Mark D , Penoncello, Gregory , Shiraishi, Satomi , Long, Kenneth M., Rong, Yi

Medical Physics | August 9, 2022 | Volume: 49 | Issue: 10 | Pages: 6303-6318

10.1002/mp.15916 Get It

AbstractPurposeTo investigate the dependency of dose‐volume histogram (DVH) behavior and precision on underlying discretization using shapes and dose distributions with known analytical DVHs for five commercial DVH calculators.MethodsDVHs and summary metrics were extracted from all five systems using synthetic cone and cylinder objects for which the true volume and DVH curves were known. Trends in the curves and metrics were explored by varying the underlying voxelization of the CT image, structure set, and dose grid as well by varying the geometry of the structure and direction of a linear dose gradient. Using synthetic structures allowed for comparison with ground truth DVH curves to assess their accuracy while an algorithm was additionally developed to assess the precision of each system. The precision was calculated with a novel algorithm that treats any “stair step” behavior in a DVH curve as an uncertainty band and calculates the width, characterized as a percent difference, of the band for various DVH metrics. The underlying voxelization was additionally changed and DVHs were extracted for two clinical examples. The details of how each system calculated DVHs were also investigated and tendencies in the calculated curves, metrics, and precision were related to choices made in the calculation methodology.ResultsCalculation methodology differences that had a noticeable impact on the DVH curves and summary metrics include supersampling beyond the input grids and interpretation of the superior and inferior ends of the structures. Among the systems studied, the median precision ranged from 0.902% to 3.22%, and interquartile ranges varied from 1.09% to 3.91%.ConclusionsCommercial dose‐evaluation solutions can calculate different DVH curves, structure volume measures, and dose statistics for the same input data due to differences in their calculation methodologies. This study highlights the importance of understanding and investigating the DVH calculation when considering a new clinical system and when using more than one system for data transfer.
Evaluating Automatic Segmentation for Swallowing-Related Organs for Head and Neck Cancer
Li, Yimin , Rao, Shyam , Chen, Wen , Azghadi, Soheila , Nguyen, K.N.B. , Moran, Angel, Usera, B.M., Dyer, Brandon A. , Shang, Lu, Chen, Quan , Rong, Yi , Rong, Yi

Technology in Cancer Research & Treatment | July 5, 2022 | Volume: 21 | Issue: No issue available | Pages: No page available

10.1177/15330338221105724 Get It

Purpose: To evaluate the accuracy of deep-learning-based auto-segmentation of the superior constrictor, middle constrictor, inferior constrictor, and larynx in comparison with a traditional multi-atlas-based method. Methods and Materials: One hundred and five computed tomography image datasets from 83 head and neck cancer patients were retrospectively collected and the superior constrictor, middle constrictor, inferior constrictor, and larynx were analyzed for deep-learning versus multi-atlas-based segmentation. Eighty-three computed tomography images (40 diagnostic computed tomography and 43 planning computed tomography) were used for training the convolutional neural network, and for atlas-based model training. The remaining 22 computed tomography datasets were used for validation of the atlas-based auto-segmentation versus deep-learning-based auto-segmentation contours, both of which were compared with the corresponding manual contours. Quantitative measures included Dice similarity coefficient, recall, precision, Hausdorff distance, 95th percentile of Hausdorff distance, and mean surface distance. Dosimetric differences between the auto-generated contours and manual contours were evaluated. Subjective evaluation was obtained from 3 clinical observers to blindly score the autosegmented structures based on the percentage of slices that require manual modification. Results: The deep-learning-based auto-segmentation versus atlas-based auto-segmentation results were compared for the superior constrictor, middle constrictor, inferior constrictor, and larynx. The mean Dice similarity coefficient values for the 4 structures were 0.67, 0.60, 0.65, and 0.84 for deep-learning-based auto-segmentation, whereas atlas-based auto-segmentation has Dice similarity coefficient results at 0.45, 0.36, 0.50, and 0.70, respectively. The mean 95th percentile of Hausdorff distance (cm) for the 4 structures were 0.41, 0.57, 0.59, and 0.54 for deep-learning-based auto-segmentation, but 0.78, 0.95, 0.96, and 1.23 for atlas-based auto-segmentation results, respectively. Similar mean dose differences were obtained from the 2 sets of autosegmented contours compared to manual contours. The dose–volume discrepancies and the average modification rates were higher with the atlas-based auto-segmentation contours. Conclusion: Swallowing-related structures are more accurately generated with DL-based versus atlas-based segmentation when compared with manual contours.
It is beneficial to invest resources to implement proton intracranial SRS
Deraniyagala, Rohan, Ding, Xuanfeng , Alonso‐Basanta, Michelle , Li, Taoran , Rong, Yi

Journal of Applied Clinical Medical Physics | June 17, 2022 | Volume: 23 | Issue: 7 | Pages: No page available

10.1002/acm2.13701 Get It

Head and neck synthetic CT generated from ultra‐low‐dose cone‐beam CT following Image Gently Protocol using deep neural network
Yuan, Nimu , Rao, Shyam , Chen, Quan , Sensoy, Levent, Qi, Jinyi , Chen, Quan , Rong, Yi

Medical Physics | March 1, 2022 | Volume: 49 | Issue: 5 | Pages: 3263-3277

10.1002/mp.15585 Get It

AbstractPurposeImage guidance is used to improve the accuracy of radiation therapy delivery but results in increased dose to patients. This is of particular concern in children who need be treated per Pediatric Image Gently Protocols due to long‐term risks from radiation exposure. The purpose of this study is to design a deep neural network architecture and loss function for improving soft‐tissue contrast and preserving small anatomical features in ultra‐low‐dose cone‐beam CTs (CBCT) of head and neck cancer (HNC) imaging.MethodsA 2D compound U‐Net architecture (modified U‐Net++) with different depths was proposed to enhance the network capability of capturing small‐volume structures. A mask weighted loss function (Mask‐Loss) was applied to enhance soft‐tissue contrast. Fifty‐five paired CBCT and CT images of HNC patients were retrospectively collected for network training and testing. The output enhanced CBCT images from the present study were evaluated with quantitative metrics including mean absolute error (MAE), signal‐to‐noise ratio (SNR), and structural similarity (SSIM), and compared with those from the previously proposed network architectures (U‐Net and wide U‐Net) using MAE loss functions. A visual assessment of ten selected structures in the enhanced CBCT images of each patient was performed to evaluate image quality improvement, blindly scored by an experienced radiation oncologist specialized in HN cancer.ResultsAll the enhanced CBCT images showed reduced artifactual distortion and image noise. U‐Net++ outperformed the U‐Net and wide U‐Net in terms of MAE, contrast near structure boundaries, and small structures. The proposed Mask‐Loss improved image contrast and accuracy of the soft‐tissue regions. The enhanced CBCT images predicted by U‐Net++ and Mask‐Loss demonstrated improvement compared to the U‐Net in terms of average MAE (52.41 vs 42.85 HU), SNR (14.14 vs 15.07 dB), and SSIM (0.84 vs 0.87), respectively (, in all paired t‐tests). The visual assessment showed that the proposed U‐Net++ and Mask‐Loss significantly improved original CBCTs (), compared to the U‐Net and MAE loss.ConclusionsThe proposed network architecture and loss function effectively improved image quality in soft‐tissue contrast, organ boundary, and small structure preservation for ultra‐low‐dose CBCT following Image Gently Protocol. This method has potential to provide sufficient anatomical representation on the enhanced CBCT images for accurate treatment delivery and potentially fast online‐adaptive re‐planning for HN cancer patients.
Artificial intelligence can overcome challenges in brachytherapy treatment planning
Cunha, J. Adam M. , Jia, Xun , Rong, Yi

Journal of Applied Clinical Medical Physics | January 18, 2022 | Volume: 23 | Issue: 1 | Pages: No page available

10.1002/acm2.13504 Get It

Proton therapy needs further technological development to fulfill the promise of becoming a superior treatment modality (compared to photon therapy)
Hyer, Daniel E. , Ding, Xuanfeng , Rong, Yi , Rong, Yi , Hyer, Daniel

Journal of Applied Clinical Medical Physics | November 3, 2021 | Volume: 22 | Issue: 11 | Pages: 4-11

10.1002/acm2.13450 Get It

Generalized methodology for radiomic feature selection and modeling in predicting clinical outcomes
Yang, Jing , Xu, Lei , Wan, Yidong , Yen, Eric, Chen, Feng , Lu, Zhongjie, Rong, Yi , Niu, Tianye , Rong, Yi , Niu, Tianye , Yang, Pengfei , Luo, Chen , Lu, Yun He

Physics in Medicine & Biology | October 11, 2021 | Volume: 66 | Issue: 21 | Pages: 215005

10.1088/1361-6560/ac2ea5 Get It

Abstract Background. Quantitative radiomic features of medical images could provide clinical significance in assisting decision-making, but the existing feature selection and modeling methods are usually parameter-dependent. We aim to develop and validate a generalized radiomic method applicable to a variety of clinical outcomes. Methods and materials. A generalized methodology for radiomic feature selection and modeling (‘GRFM’ for short), including two-step feature selection and logistic regression, was proposed for studying clinical outcomes correlations. The two-step feature selection consists of Pearson correlation analysis followed by a sequential forward floating selection algorithm to identify robust feature subsets. We also applied an adaptive searching strategy to systematically determine globally optimal parameters, rather than relying on preset parameters. The area under the receiver operating characteristic curve (AUC) was used to evaluate the performance of three outcomes: lymph node metastasis of gastric cancer (GC), the five-year survival status of high-grade osteosarcoma (HOS), and the pathological grade of pancreatic neuroendocrine tumors (pNETs). Results. The optimal Pearson thresholds were 0.85, 0.80 and 0.75, and the optimal feature numbers were 11, 14 and 8 in GC, HOS and pNETs, respectively. The AUC values of the three predictive models combined with the corresponding parameters were 0.9017 versus 0.9026, 0.7652 versus 0.7113, and 0.8438 versus 0.8212 for the training and validation cohorts, showing promissing generality and classifier performance . Conclusion. The proposed method was helpful in predicting different clinical outcomes, and has potential application as a general and noninvasive prediction tool to guide clinical decision-making in various cancer sites.
Future mainstream platform for online adaptive radiotherapy will be using on‐board MR rather than on‐board (CB) CT images
Hyer, Daniel E. , Cai, Bin , Rong, Yi , Rong, Yi , Hyer, Daniel

Journal of Applied Clinical Medical Physics | July 19, 2021 | Volume: 22 | Issue: 7 | Pages: 4-9

10.1002/acm2.13352 Get It