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Badar, Talha

https://orcid.org/0000-0003-1548-918X

Mayo Clinic

Mayo Clinic in Florida

Citations 184

Impact of Response to Hypomethylating Agent-Based Therapy on Survival Outcomes in the Context of Baseline Clinical-Molecular Risk and Transplant Status in Patients with Myelodysplastic Syndromes/Neoplasms (MDS): An Analysis from the International Consortiu
Bláha, Ondřej , Ali, Najla H. Al, Stein, Eytan M. , Brunner, Andrew M. , McMahon, Christine M. , Shallis, Rory M. , Frumm, Stacey M. , Barua, Shougat , Chandhok, Namrata S. , Logothetis, Constantine , Bidikian, Aram, Getz, Ted M. , Harris, Amyah C., Hawkins, Hayley, Ball, Somedeb , Grenet, Justin , Haferlach, Torsten , Maciejewski, Jaroslaw P. , Sallman, David A. , Al-Rabi, Kamal , Halahleh, Khalid , Pleyer, Lisa , Pappa, Vassiliki, Consagra, Angela , Al‐Kali, Aref , Zeidan, Amer M., Stahl, Maximilian , Rolles, Benjamin , Bewersdorf, Jan Philipp , Kewan, Tariq Zuheir , Stempel, Jessica M. , Lanino, Luca , Dezern, Amy Elizabeth , Sekeres, Mikkael A. , Uy, Geoffrey L. , Carraway, Hetty E. , Desai, Pinkal , Griffiths, Elizabeth A. , Brunner, Andrew M., Zeidner, Joshua F. , Savona, Michael R. , Roboz, Gail J. , Wang, Eunice S. , Harris, Amyah C., Amaya, Maria L. , Xie, Zhuoer , Madanat, Yazan F. , Abaza, Yasmin , Badar, Talha , Enjeti, Anoop Kumar , Hiwase, Devendra , Díez‐Campelo, María , Valcárcel, David , Haferlach, Claudia , Kotsianidis, Ιoannis , Pappa, Vasiliki , Santini, Valeria , Ogawa, Seishi , Nannya, Yasuhito , Della Porta, Matteo Giovanni , Komrokji, Rami S. , Zeidan, Amer M.

Blood | December 5, 2024 | Volume: 144 | Issue: Supplement 1 | Pages: 664-664

10.1182/blood-2024-208034 Get It

Introduction: Response assessment is used to evaluate effectiveness of hypomethylating agent (HMA)-based therapy in myelodysplastic syndromes/neoplasms (MDS) in clinical practice and trials. Recently, the clinical response criteria (IWG 2023) and the clinical-molecular risk assessment (IPSS-M) in MDS were published. However, it remains unknown whether the IWG 2023 response criteria have an independent impact on overall survival (OS) when adjusting for baseline IPSS-M risk. Additionally, the association of IWG 2023 response criteria with OS in patients (pts) undergoing allogeneic stem cell transplantation (allo-HCT) versus those who do not is unknown. Lastly, it is unclear if optimal time-to-transplant impacts OS in MDS pts who achieve a IWG 2023 defined remission with HMA therapy. We examined these questions in a large population of MDS pts within the multi-institutional international consortium for MDS (icMDS) VALIDATE database. Methods: High-risk MDS pts with IPSS ≥1.5 or IPSS-R >3.5 treated with HMA-based therapy were included in the study. Baseline IPSS-M risk was stratified into very low/low/moderate low (VL+L+ML), moderate-high/high (MH+H), and very high (VH). Response to treatment was evaluated using the IWG 2023 criteria and grouped into: composite complete response (cCR) and no cCR. cCR included: complete response (CR), CR equivalent (CRequ), CR bilineage (CRbi), CR unilineage (CRuni), and CR with partial hematologic recovery (CRh). We analyzed the differential impact of achieving cCR on HMA-based therapy prior to transplant on OS in pts who either did or did not undergo allo-HCT, while adjusting for their baseline IPSS-M risk in Cox regression analysis. Optimal time-to-transplant was determined based on age and IPSS-M category as described by Tentori et al. (JCO 2024). Pts proceeding to allo-HCT were stratified on whether they underwent transplant within the optimal time-to-transplant timeframe after MDS diagnosis or not. VALIDATE protocol was exempted, acknowledged, or approved by all centers' IRBs. VALIDATE is supported by an independent grant from AbbVie. Results: We analyzed 762 MDS pts. The median age at MDS diagnosis was 68 years (range: 19-95 years) and 64% of pts were male. Distribution of the baseline IPSS-M risk was: VL+L+ML in 110 (14%) pts, MH+H in 347 (46%) pts, VH in 305 (40%) pts. Pts received azacitidine monotherapy, decitabine monotherapy, and HMA-based combination therapy (e.g. HMA + venetoclax) in 52%, 21%, and 28% of cases, respectively. A total of 282/762 (37%) pts achieved cCR as their best response to HMA-based therapy. The median OS for all pts was 18.7 months (95% CI: 16.6-21.3 months). Pts who did not undergo allo-HCT (n=436, 57%) had an improved median OS if they achieved cCR when compared to pts in the no cCR group in all IPSS-M risk groups (VL+L+ML: 23.5 months vs. 10.7 months; MH+H: 20.8 months vs. 11.6 months; VH: 13.8 months vs. 7.5 months). Cox analysis demonstrated an independent effect of cCR on OS in these pts when adjusted for baseline IPSS-M risk (cCR vs. no cCR: HR 0.60, 95% CI 0.48-0.76, p<0.001). In contrast, in pts who subsequently received an allo-HCT (n=326, 43%), achieving cCR with HMA prior to allo-HCT did not provide an additional OS benefit, when adjusted for baseline IPSS-M risk (cCR vs. no cCR: HR 1.00, 95% CI 0.73-1.38, p=0.986). The median time-to-transplant was 6.7 months and 34% of transplanted MDS pts received their allo-HCT during the optimal timeframe. Among pts who achieved cCR with HMA-based therapy prior to allo-HCT, optimal time-to-transplant was associated with significantly improved OS (optimal vs. non-optimal timing: HR 0.55; p=0.033). Conclusion: Baseline IPSS-M risk and allo-HCT had an independent impact on OS, while IWG 2023 defined cCR had an independent effect on OS only in non-transplanted MDS pts. While this retrospective analysis occurred at large academic centers with specific expertise in the management of MDS, our data may have an impact on clinical practice: (i) failure to achieve cCR on HMA therapy prior to transplant should not impact the decision to proceed to allo-HCT, (ii) upfront allo-HCT without prior HMA therapy might also be an option if the clinical situation and availability of donors allow, and (iii) allo-HCT should ideally be performed during the timeframe that is considered optimal as defined by pt age and baseline IPSS-M.
Largest Real-World Evaluation of Treatment Regimens and Clinical Outcomes Among Patients with Acute Promyelocytic Leukemia in the US: Data from the Command Consortium
Canadeo, Angela , Giever, Emily, Winer, Eric S. , Anderson, Clare , Shallis, Rory M. , Muradashvili, Tinatin , Coltoff, Alexander , Guo, Qi , Goldberg, Leah, Fariduddin, Maaridge, Ayoub, Rauna, Foucar, Charles , Nai, Nhi , Dalgetty, Mark, Gold, Matthew , Guduru, Medha, Szabó, Anikó , Jin, Yuchen , Badar, Talha , Campos, Jaclynn, Lin, Chenyu , Patel, Anand , Abaza, Yasmin , Ayoub, Rauna, Kota, Vamsi , Gold, Matthew, Atallah, Ehab

Blood | December 5, 2024 | Volume: 144 | Issue: Supplement 1 | Pages: 5174-5174

10.1182/blood-2024-198914 Get It

Background: Acute promyelocytic leukemia (APL) is one of the most treatable leukemias in the current era, with cure rates upwards of 90%. Early mortality due to coagulopathies often seen at diagnosis is a major driver of adverse outcomes. Prompt initiation of all-trans retinoic acid (ATRA) is crucial for suspected APL, as it is known to reverse these coagulopathies. Chemotherapy-free protocols consisting of arsenic trioxide (ATO) and ATRA have become the standard of care for low-risk APL with high cure rates and reduced hematologic toxicities. For high-risk disease, there are multiple treatment options that have not been compared. Since APL is rare, there is a lack of real-world data for this disease. This retrospective review aimed to assess the outcomes of APL patients (pts) across multiple institutions and to examine the most common induction regimens, characteristics linked to early (30-day) mortality, and supportive care strategies. Methods: This retrospective study involved 9 institutions in the US and was conducted through the Consortium on Myeloid Malignancies and Neoplastic Diseases (COMMAND). Data included pts admitted from 8/5/2006 through 2/3/2024 with a confirmed diagnosis of APL. Each institution received a data-collection form and contributed data on APL pts from presentation to last follow-up. Key data categories included patient demographics, presenting laboratory and molecular data, treatment regimen, supportive care, and patient outcomes. Results: Data for 412 pts were identified with a median age of 51 (range 17-90) and 49% were female. Cardiovascular comorbidities were present in 44% of pts and 16% had a known pulmonary comorbidity. At presentation 109 (27%) had high risk-disease, defined as a white blood cell count (WBC) greater than 10 x 109/L. A FLT3 mutation was seen in 50% of tested pts, WT1 (22%), KRAS (3.6%), and NRAS (6.5%). The median WBC at presentation was 2 x 109/L (range: 0-166 x 109/L) and the median platelet count was 27 x 109/L (range: 2.0-315 109/L). Twenty-six percent presented with grade 2+ thrombosis, bleeding, or both. A higher percentage of pts with high-risk vs. low-risk disease presented with grade 2+ thrombosis, bleeding, or both (43% vs. 20%), DIC (60% vs. 36%), and mutated FLT3 (81% vs. 37%). The majority of pts received a chemotherapy-free induction regimen consisting of ATRA plus ATO. It was determined that 36 (8.7%) pts received induction with intermittent ATO plus ATRA (Burnett AK, Lancet Oncol 2015), 276 (67%) received daily ATO plus ATRA (Ravandi F, J Clin Oncol 2009 and Lo Coco, NEJM 2013), and 70 (17%) received a regimen inclusive of an anthracycline plus ATRA. Eleven pts did not start an induction regimen other than single-agent ATRA due to early death, while 19 had their regimen classified as “other” because they did not follow a conventional induction path. In total, 295/358 (82%) received ATRA within 24 hours of admission. At least 1 dose of gemtuzumab ozogamicin was given to 58 (14%) pts, of which 35 (60%) were considered high risk. The incidence of differentiation syndrome (DS) was 37% (n=154). Among the 243 pts who received steroid prophylaxis, 30% developed DS, compared to 52% of those who did not receive prophylaxis. Among the 360 pts with at least 1 available PCR result after starting induction, 94% achieved PCR-negativity. The 30-day mortality rate was 6.6%. On univariate analysis, presenting variables associated with a higher 30-day mortality include older age, diabetes, cardiovascular comorbidities, thrombosis or bleeding, DIC, eGFR < 60, elevated total bilirubin and D-dimer levels, and high-risk disease. The median overall survival (OS) of the cohort was not reached, and the 5- and 10-year OS was 88% (95% CI: 84-91%) and 79% (95% CI: 72-87%) respectively. The cumulative incidence of relapse at 3 years was 2.7% (95% CI: 1.4 - 5.1%), with no additional relapses observed. The incidence of CNS relapse at 3 years was 0.9% (95% CI: 0.3% - 2.8%), with 2 of the 4 pts classified as high-risk. Conclusion: This is the largest real-world evidence data collection in the US evaluating the outcome of pts with APL in the current era, inclusive of ATO as front-line induction. Outcomes for this disease remain extremely positive, with low 30-day mortality rates noted in this study along with durable OS rates and low incidence of relapse. Additional information on outcomes, safety, and supportive care will be presented at the meeting.
Venetoclax in Combination with Hypomethylating Agent (HMA) Compared to HMA Alone Improves Response but Not Survival in TP53-mutated High-Risk Myelodysplastic Syndrome: Real-World Mayo Clinic Series
Shah, Kashish J., Kettani, Mobachir El , Foran, James M. , Kharfan‐Dabaja, Mohamed A. , Gangat, Naseema , Al‐Kali, Aref , Yi, Cecilia Y. Arana , Sproat, Lisa, Palmer, Jeanne , Litzow, Mark R. , Patnaik, Mrinal M. , Badar, Talha , Shah, Kashish J., Murthy, Hemant S. , Shah, Meera , Alkhateeb, Hassan B. , Saliba, Antoine N. , Hogan, William J. , Yi, Cecilia Arana

Blood | December 5, 2024 | Volume: 144 | Issue: Supplement 1 | Pages: 1823-1823

10.1182/blood-2024-203825 Get It

Background TP53-mutant (mt) myelodysplastic syndromes (MDS) are high-risk (HR) neoplasms, with high rates of AML progression and suboptimal response to hypomethylating agents (HMA). Given the lack of effective therapies for HR-MDS, azacitidine (AZA) was combined with venetoclax (VEN) in a phase Ib MDS study demonstrating safety and early efficacy (Garcia et al. ASH abstract 2023). We retrospectively sought to explore clinical outcomes comparing VEN + HMA, to HMA alone in TP53mt HR-MDS. Methods Among 221 TP53mt MDS pts treated at the Mayo Clinic between January 2007 and April 2024, we reviewed outcomes of pts who received HMA alone (n=98) or HMA+VEN combination (n=34) as their first-line chemotherapy regimen. MDS diagnosis was based on the 5th edition of WHO classification of hematolymphoid tumors (Khoury et al. Leukemia 2022). Responses were assessed according to the International Working Group 2006, MDS response criteria (Cheson et al Blood 2006). Results Baseline characteristics and response The median age (years [yrs]) was 65 (R,37-80) and 70 (range [R], 19-87) yrs in the HMA + VEN and HMA alone groups (gps) (p= 0.42), respectively. The median bone marrow (BM) blast % (9.5 [R, 0-18] vs 5 [R, 0-16], p= 0.01) and TP53 variant allele frequency (VAF) (42 [R, 6-96] vs 37 [R, 2-94], p= 0.03) were significantly higher in HMA + VEN compared to HMA gps, respectively. However, proportion of pts with biallelic (BA)/multihitTP53mt (85% vs 79%, p= 0.61) and complex cytogenetics (CG) (85% vs 81%, p= 0.85) were not different between HMA + VEN and HMA alone gps. The distribution of pts with frequently occurring myeloid co-mutations (ASXL1, TET2, DNMT3A, RAS, BCOR and splicing factor) were not significantly (NS) different between the two gps. IPSS-M scores were assessed in 108 (83%) pts; HR/very HR-MDS as per IPSS-M were NS different between HMA + VEN and HMA gps (100% vs 91%, p= 0.12). While the overall response rate (ORR) (76% vs 49%, p= 0.01) and marrow complete remission (mCR) rates (21% vs 7%, p= 0.05) were higher with HMA+VEN compared to HMA, CR rates were similar (17% vs 12%, p= 0.47). Higher proportion of pts were bridged to allogeneic stem cell transplantation (allo-HCT) (41% vs 20%, p= 0.02), while AML progression rates (29% vs 31%, p= >0.99) were comparable between HMA + VEN and HMA gps, respectively. The non-relapse mortality (NRM) at day 60 (3% vs 3%, p=0.96) and day 90 (3% vs 4%, p=0.75) were comparable between HMA + VEN and HMA gps, respectively. RFS and OS The median follow-up from the time of initiation of HMA or HMA + VEN was 9.7 months (mo) (R, 0.3-90.6). The median RFS (8.47 vs 9.90 mo, p= 0.83) and OS (16.33 vs 14.20 mo, p= 0.66) from the time of initiation of therapy were comparable between the two gps. Similarly, among transplanted pts, there was no OS difference between HMA (21.7 mo) and HMA + VEN (18.43 mo) gps, respectively (p= 0.72). Comparable results for OS and RFS were obtained in both gps after censoring pts at the time of allo-HCT. Multivariable analysis for RFS and OS We conducted multivariable analysis (MVA) for RFS and OS using baseline variables that were significant/ trended towards significance (p<0.1), on univariate analysis (UVA) censored at the time of allo-HCT. Achieving ORR (HR; 0.30, 95% CI: 0.14-0.62, p= 0.001) retained significance for better RFS in MVA. Interestingly CR (HR; 1.74, 95% CI; 0.63-4.77, p= 0.28), BA TP53mt (HR; 1.27, 95% CI; 0.13-11.72, p= 0.83) and complex CG (HR; 1.52, 95% CI 0.16-14.03, p= 0.70) did not retain significance for RFS in MVA. In MVA for OS, achievement of ORR (HR; 0.56, 95% CI; 0.30-1.05, p=0.07) and CR (HR; 0.32, 95% CI; 0.09-1.11, p=0.071) trended towards favorable OS. BA TP53mt status (p= 0.42) and complex CG (p= 0.19) did not significantly impact OS in UVA. Conclusion We conclude that while HMA+VEN combination therapy in comparison to HMA monotherapy led to improved response rates, with higher percentage of pts being bridged to allo-HCT, this was not associated with reduced risk of AML transformation, or improved RFS/OS. We eagerly await results from the prospective randomized trial of VEN + AZA in treatment-naïve HR-MDS (VERONA).
Clinical Characteristics of Myeloproliferative Neoplasms in Patients with DDX41MT Germline Predisposition Syndrome
Kusne, Yael , Marando, Ludovica , Mangaonkar, Abhishek A. , Finke, Christy M. , Foran, James M. , Al‐Kali, Aref , Gangat, Naseema , Palmer, Jeanne , Viswanatha, David S., Litzow, Mark R. , Pardanani, Animesh , Tefferi, Ayalew , Ferrer, Alejandro Tiana, Patnaik, Mrinal M. , Badar, Talha , Lasho, Terra L. , Alkhateeb, Hassan B. , Chlon, Timothy M. , Ferrer, Alejandro

Blood | December 5, 2024 | Volume: 144 | Issue: Supplement 1 | Pages: 3183-3183

10.1182/blood-2024-202406 Get It

Background: While myeloproliferative neoplasms (MPN), including essential thrombocythemia (ET), polycythemia vera (PV), and primary myelofibrosis (MF), are usually sporadic, adult-onset neoplasms, an increasing number of germline risk alleles have been described (e.g. EGLN1, ETV6, SH2B3, and ATM) in these disorders. DDX41MT Germline Predisposition Syndrome (GPS) is the most common myeloid GPS in adults and while there is extensive data on MDS/AML, little is known regarding MPN occurring in this context. We carried out this study to define the prevalence and characteristics of DDX41MT-GPS associated MPN. Methods: After IRB approval, we retrospectively assessed the Mayo Clinic cohort of 174 patients with DDX41MT-GPS, which included both pathogenic and clinically relevant germline variants of undetermined significance (VUS), based on our previous analysis (Badar et al Haematologica 2023). Standard statistical measures were applied. Results: We identified 12 (6.9%) patients with MPN (ET-5, PV-2, PMF-4, MPN-NOS-1). The median age at MPN diagnosis was 61.2 years (range, 8.-70.4); 58.3% (n=7) were male, and 83.3% (n=10) were Caucasian. A family history of hematologic malignancy was present in 16.7% (n=2, AML and T-LGL), while 50% (n=6) had a family history of visceral malignancies and 41.7% (n=5) had no family history of malignancies. Among ET patients (n=5) with DDX41MT-GPS, JAK2V617F was the MPN driver in 4 (80%) while type 1-CALR (L367fs*46) was a driver in 1 (20%). This included a 9-year-old child diagnosed with JAK2V617FMT ET. The DDX41 variant was classified as pathogenic in 40% (n=2; E113Kfs*14, D140Gfs*2) and VUS in 60% (n=3; V544L, V591I, P38L). Bone marrow (BM) aspirates in the ET patients were hypercellular in 40% (n=2), normocellular in 40% (n=2) and hypocellular in 20% (n=1), and none had increased blasts, or reticulin fibrosis (RF). In addition to JAK2V617F, somatic mutations seen included SF3B1 (K666T, VAF 16%) in 1 patient and IDH2 (R140Q, VAF 6%) and DNMT3A (R882H, VAF 7%) in 1 patient, respectively. With a median follow-up from diagnosis of 3.9yrs (range 2.9-8.9), there were no thrombotic events and no disease progressions was documented. There were 2 patients with JAK2V167FMT PV in whom the DDX41MT were clinically significant VUS (c.138+5G>T and M155I). Both patients had hypercellular BM, with no increase in blasts, no RF, normal karyotypes and no additional somatic mutations. With a median follow up of 7.5yrs (range, 2.1-12.9), 1 patient developed a deep vein thrombosis (DVT) and there were no fibrotic or leukemic transformations. There were 4 patients with PMF; 3 (75%) with JAK2V617F and 1(25%) with a type 1-CALR driver mutation (L367fs*46). DIPPS-plus scores ranged from 1 to 4 (median 2.5). The DDX41 variants were pathogenic in 50% (n=2, E256K and P78Qfs*3) and VUS in 50% (n=2, P510S and M155I). The median grade of RF at PMF diagnosis was grade 2 (range, 2-3). BM were hypercellular in 75% (n=3) and hypocellular in 25% (n=1), and 1 patient had 3% peripheral blasts (and no BM blasts). Somatic co-mutations included TET2 in 1 patient with a JAK2V617F, and CBL, EZH2 and SRSF2 in 1 patient with a CALR driver-mutation, respectively. PMF patients were treated with ruxolitinib (n=3), stem cell transplant (n=1), and pIFNα (n=1). With a median follow up of 3.9yrs (range,1.1-21.9), all patients were alive, and none had leukemia transformation. There was 1 patient with a JAK2V617F MPN-NOS with trisomy 9, where the DDX41MT-GPS was a VUS (I215L). There were no somatic co-mutations and at last follow up (3.1 years), there was no evidence for progression. Conclusions: While associations between late onset MDS/AML and DDX41MT-GPS has been well established, we systematically describe the MPN landscape seen in this context. MPN was diagnosed in 7% of our cohort, with JAK2V617F being the most common driver mutation. Most importantly, unlike in AML/MDS, where somatic DDX41 mutations are frequently associated with neoplastic transformation (30-50%; R525H being most common), none of our MPN patients had a somatic DDX41 mutation. Our work underscores the importance of germline mutation testing in patients with MPN.
TP53 mutations and Complex Karyotype in Newly-Diagnosed Blast/Accelerated Phase MPN Are Associated with Ephemeral Response to Treatment with Venetoclax + HMA and Poor Survival
Gangat, Naseema , Elbeih, Azeem, Ghosoun, Nour, Abdelmagid, Maymona, Al‐Kali, Aref , Begna, Kebede, Elliott, Michelle A. , Litzow, Mark R. , Mangaonkar, Abhishek A. , Foran, James M. , Palmer, Jeanne , Yi, Cecilia Y. Arana , Patnaik, Mrinal M. , Pardanani, Animesh , Tefferi, Ayalew , McCullough, Kristen , Elbeih, Azeem, Ghosoun, Nour, Alkhateeb, Hassan B. , Hefazi, Mehrdad , Hogan, William J. , Saliba, Antoine N. , Shah, Meera , Badar, Talha , Yi, Cecilia Arana

Blood | December 5, 2024 | Volume: 144 | Issue: Supplement 1 | Pages: 6657-6657

10.1182/blood-2024-193917 Get It

Background Blast or accelerated phase myeloproliferative neoplasm (MPN-BP/AP) carries a dismal prognosis, with 3-year survival estimates of <5% (BCJ 2023;108). Patients with MPN-BP/AP were excluded from venetoclax (Ven) plus hypomethylating agent (HMA) clinical trials for acute myeloid leukemia (NEJM 2020;383:617). In the current retrospective study, we examined response patterns and long-term survival of newly-diagnosed MPN-BP/AP patients who received treatment with Ven+HMA, outside of clinical trials. Methods Newly-diagnosed patients with MPN-BP/AP treated with Ven+HMA at the Mayo Clinic, between March 2019 and May 2024, were retrospectively reviewed. Diagnostic criteria were according to the International Consensus Classification (Blood 2022;140:1200). Cytogenetic and molecular studies were performed by conventional karyotype and next-generation sequencing, respectively. All patients received at least one cycle of Ven+HMA (azacitidine 75 mg/m2 days 1-7 or decitabine 20 mg/m2 days 1-5). Response was assessed according to the 2022 European Leukemia Net criteria (Blood 2022;140:1345). Standard statistical analyses were performed using JMP Pro (Version 17.1.0). Results Patient characteristics 70 patients (median age 73 years, 59% males, 48% splenomegaly >14 cm, 4% isolated myeloid sarcoma) with newly-diagnosed MPN-BP (n=58) or AP (n=12) received Ven+HMA with (n=13) or without (n=57) concomitant JAK2 inhibitor. Driver mutation distribution was 69% JAK2, 21% CALR, 6% MPL, and 4% triple negative. Mutations involved ASXL1 (31%), TP53 (28%), TET2 (28%), RUNX1 (25%), SRSF2 (18%), IDH2 (12%), U2AF1 (11%), DNMT3A (9%), IDH1 (7%), and K/NRAS (7%). Karyotype was abnormal in 50 (76%) of 66 informative cases, of which 28 (56%) were complex (CK). Median TP53 mutation variant allele frequency (VAF) was 30% (8-96%) and all evaluable cases displayed CK (n=18). Response and Survival Complete remission (CR; 21%) or CR with incomplete count recovery (CRi; 19%) was documented in 28 (40%) patients with residual MPN in 18 (64%) patients. Median response duration was 5.5 months (1-60 months). After a median follow up of 7 months (1-62 months), 48 (69%) deaths, 13 relapses (46%), and 15 (21%) allogeneic stem cell transplants (ASCT; 12 in CR/CRi) were recorded. Median overall survival (OS) was 9 months and was superior with ASCT (median 22 vs. 8 months; p=0.01). In univariate analysis, transplant-censored survival was superior with CR/CRi (12 vs. 5 months; p<0.01) and IDH1 mutation (33 vs. 8 months; p=0.04) and inferior with CK (7 vs. 10 months; p=0.05), TP53 mutation (5 vs. 10 months; p<0.01), post polycythemia vera myelofibrosis (post-PV MF) (3 vs. 9 months; p=0.01), and splenomegaly >14 cm (5 vs. 16 months; p<0.01). Multivariable analysis confirmed the negative survival impact of not achieving CR/CRi (HR 3.8; p<0.01) and presence of TP53 mutation (HR 4.0; p<0.01); median survival (1/3-year survival rate) was 3 months (10%/0%) in TP53 mutated patients not achieving CR/CRi (n=11) vs. 27 months (65%/28%) in TP53 unmutated cases achieving CR/CRi (n=19) (p < 0.01). Median survival in patients with TP53 mutations or CK who achieved CR/CRi (n=7; 7 months) was inferior to that in treatment responders without TP53 mutations or CK (n=18; 23 months; p=0.01). CR/CRi rates in the presence vs. absence of TP53 mutations were 42% vs. 39% (p=0.80) and of CK (25% vs. 50% (p=0.04). Importantly, responses in the presence of TP53 mutations or CK were too short-lived to allow successful bridging to ASCT (median 2 vs. 9 months; p<0.01). Additional predictors of inferior treatment response included splenomegaly >14 cm (24% vs. 53%; p=0.01), and post-PV MF (0% vs. 46%; p<0.01) while SRSF2 (67% vs. 34%; p=0.04) and IDH2 mutations (75% vs. 35%; p=0.03) were associated with favorable response. In multivariable analysis, CK (p=0.04) and splenomegaly >14 cm (p=0.01) remained independent predictors of inferior response. The use of concomitant JAK2 inhibitor therapy did not impact treatment response (CR/CRi 46% vs. 39%; p=0.62) or survival (median 9 vs. 8 months; p=0.71). Conclusions TP53 mutations and CK undermine the value of Ven+HMA, with or without concomitant JAK2 inhibitor, in enabling successful bridging of newly-diagnosed MPN-BP/AP to ASCT. An alternative treatment approach is advised, in the particular scenario, while the observed 3-year survival rate of 28%, in treatment responders without TP53 mutations, is encouraging.
A Prospective Cohort Study of Biologic and Chronologic Aging in 106 Patients with Age and Context-Relevant Clonal Hematopoiesis
Li, Marissa , Chandra, Tamir , Aug, Sarah, Finke, Christy M. , Gangat, Naseema , Mangaonkar, Abhishek A. , Simon, Rachel A, Patnaik, Mrinal M. , Foran, James M. , Yi, Cecilia Y. Arana , Kusne, Yael , Fernandez, Jenna , Kirschner, Kristina , McCullough, Kristen , Lasho, Terra L. , Ferrer, Alejandro , Yi, Cecilia Arana , Badar, Talha

Blood | December 5, 2024 | Volume: 144 | Issue: Supplement 1 | Pages: 5632-5632

10.1182/blood-2024-206069 Get It

Background: Age-related clonal hematopoiesis (ARCH) is a precursor state to blood cancers and is associated with epigenetic age acceleration (EpiAgeAccel) (Aging Cell, 2021). While ARCH in combination with AgeAccel has the highest risk for all cause mortality and cardiovascular disease, not much is known about context-relevant clonal hematopoiesis (CRCH) - CH occurring in the context of prior chemo/radiation, bone marrow failure and germline predisposition syndromes. CRCH has a unique mutational signature enriched in genes in DNA damage response and repair (TP53 and PPM1D). To answer this question, we assessed EpiAge in a prospective cohort of patients with both ARCH and CRCH. Methods: Patients were prospectively recruited for CH and EpiAge assessment from the Mayo Clinic CH clinic between 2022 and 2024. Demographic and clinical data including chronologic age, BMI, sex, blood counts, and medical history were recorded at the time of enrollment. CH status was determined using error corrected sequencing on peripheral blood (PB) DNA. All somatic variants with a variant allele frequency (VAF) ≥0.5% were considered as CH. For EpiAge analysis PB DNA was analyzed using the Illumina MethylationEPIC array. The resulting beta values were used to obtain epigenetic age estimates using Horvath's clock (Genome Biol., 2013), Hannum's Clock (Mol Cell., 2013), PhenoAge (Aging, 2018), DunedinPACE (eLife, 2022), and predicted telomere length (Aging, 2019). Results: 106 (62%) of 170 patients assessed were found to have CH, with the most frequent mutations being TET2 (19%), PPM1D (17%), DNMT3A (16%), ASXL1 (9%), and TP53 (6%); median VAF 9.5%. Except for a higher median chronologic age (68 vs 60 years, p<0.001) in the CH group, baseline characteristics including BMI, comorbidities, baseline blood counts, sex and tobacco use history were similar between the two groups. The CH group demonstrated significant EpiAgeAccel by all three clocks: Horvath (p=0.001), Hannum (p<0.001), and PhenoAge (p<0.001); with an increase in biological age of 4.9 years (95% CI 2-7.7) by Horvath clock, 4.8 years (95% CI 2.2-7.5) by Hannum clock, and 7 years (95% CI 2.9-10.5) by PhenoAge, after adjusting for chronologic age, sex, smoking status, and cancer history. CH was also associated with increased DunedinPACE of aging by 0.13 biological year per chronologic year (bioyear/chronoyear) (95% CI 0.06-0.2, p<0.001), and shortened telomere lengths by 0.24kb (95% CI 0.11-0.35, p<0.001) after adjusting for chronologic age and excluding patients with telomere biology disorders. CH patients were then further classified into ARCH-63 (59%) and CRCH-43 (41%). While the median chronological age (69 vs 67 years) was similar between the 2 groups, CRCH patients had lower Hgb [10.9g/dL vs. 13g/dL (p=0.0001)] , lower platelet [146x109/L vs. 192x109/L (p=0.0132)] and lower WBC [4.4x109/L vs. 5.2x109/L (p=0.0345)]. The median BMI, comorbidities, and tobacco use history were similar between the 2 groups. The 3 most common ARCH mutations were TET2 (20%), DNMT3A (19%), and ASXL1 (14%), while, PPM1D (27%), TET2 (18%), and DNMT3A (14%) were frequent in CRCH. There was no significant difference found in median EpiAge via Horvath (68 vs 67.5years p=0.2826), Hannum (65 vs 66 years p=0.9333), or PhenoAge (55 vs 56 years p=0.618) between ARCH and CRCH. However, DunedinPACE of aging was higher in CRCH (1.27 vs 1.18 bioyear/chronoyear p=0.0148) and median telomere length was shorter in CRCH (6.35 vs 6.49kb p=0.0247), in comparison to ARCH. Multivariable regression analysis was completed for both ARCH and CRCH compared to non-CH, adjusting for chronologic age, smoking status, and male sex. While both ARCH and CRCH demonstrated EpiAgeAccel via Horvath(5.8years p=0.0001, 3.4 years p=0.051), Hannum(5years p=0.001, 4.5 years p=0.007), and PhenoAge (6.7years p=0.002, 7.6 years p=0.002) clocks, CRCH more than doubled DunedinPACE (0.2 bioyear/chronoyear, p<0.001) of aging compared to ARCH (0.08 bioyear/chronoyear, p=0.026). CRCH also demonstrated double the decrease in telomere length (0.34kb, p<0.001) compared to ARCH (0.17kb, p=0.015). Conclusion: Our prospective CH cohort study validates the association between CH and EpiAgeAccel using several different methylation clocks and for the first time, highlights increased pace of aging and shorter telomere lengths in CRCH versus ARCH. Correlations with cardiovascular disease and mortality outcomes are ongoing.
Next-Generation Sequencing-Based T-Cell Receptor (TR) Measurable Residual Disease Monitoring Does Not Predict Relapse in T-Lineage Acute Lymphoblastic Leukemia
Madero‐Marroquin, Rafael , Moreno, Yenny Vanegas, Anderson, Clare , Coltoff, Alexander , Odenike, Olatoyosi , Saygin, Caner , Askari, Adnan, Badar, Talha , Murthy, Guru Subramanian Guru , Lin, Chenyu , DuVall, Adam , Larson, Richard A. , Stock, Wendy , Patel, Anand

Blood | December 5, 2024 | Volume: 144 | Issue: Supplement 1 | Pages: 5937-5937

10.1182/blood-2024-203665 Get It

Introduction: The development of increasingly sensitive tests for the detection of measurable residual disease (MRD), such as multiparameter flow cytometry (MFC) and next-generation sequencing (NGS) assays, has changed clinical practice in acute lymphoblastic leukemia (ALL). IGH V(D)J-based NGS MRD is the most sensitive assay to predict relapse in patients (pts) with B-ALL (Short, Blood Adv 2022). However, data regarding the use of T-cell receptor (TR) NGS MRD in T-ALL are limited and recent reports from pediatric cohorts suggest that persistent TR MRD may not predict relapse in T-ALL (Roy, ASH 2023, abstract 2976). With limited options for the treatment of relapsed/refractory T-ALL, accurate prediction of high relapse risk may provide an opportunity for early intervention. In this study, we evaluated the prognostic utility of TRB/TRG NGS MRD and its correlation with MFC MRD in adult patients with T-ALL. Methods: We retrospectively evaluated the MRD data and clinical outcomes of precursor T (pre-T) and early T precursor (ETP) ALL patients treated at four academic centers in the US. MRD was evaluated using MFC in CLIA-certified labs at individual sites with a sensitivity of 10-4, and the clonoSEQ (Adaptive Technologies, lnc) NGS assay, with a sensitivity of 10-6. Pts were included if they had a trackable TR clone and NGS MRD remission assessment in at least one time point. The correlation between the percentage of MRD by MFC vs NGS was calculated with the Pearson correlation coefficient, using every available MRD assessment for T-ALL pts in complete remission. Relapse-free survival was stratified based on NGS MRD level at the time of post-induction and post-consolidation assays, and comparisons were made with the log-rank test. The positive predictive value (PPV) for relapse of NGS MRD was calculated for pts with MRD > 10-6 at the post-induction and post-consolidation period. Results: A total of 19 pts who met our inclusion criteria, with a median age of 30 years (range, 18-65). 9 pts (47%) had ETP-ALL, 10 pts had pre-T ALL. Pts had a trackable TRB/TRG clone in 76% of cases, with 66% having a trackable TRG clone and 38% having a trackable TRB clone. 10 pts (53%) were treated with a modified AALL0434 regimen as first line therapy, 6 pts (32%) were treated with CALGB10403, 1 pt (5%) was treated with hyperCVAD, 1 pt (5%) was treated with a BFM regimen, and 1 pt (5%) was treated with CALGB9511. Out of 11 T-ALL pts with MRD data available post-induction, 6 pts (55%) had detectable MRD by NGS and no detectable MRD by MFC. Out of 13 pts with available post-consolidation MRD data, 2 pts (15%) had undetectable MRD by both NGS and MFC and 9 pts (69%) had detectable MRD by NGS only. There were no pts with detectable MRD by MFC and undetectable MRD by NGS at either timepoint. A total of 64 MRD data points from 19 pts were available to evaluate MRD correlation by MFC vs NGS, for which the Pearson correlation coefficient showed a statistically significant linear correlation (p < 0.01). At post-induction, 9 pts had NGS MRD > 10-4 and 2 pts had NGS MRD < 10-4. With a median follow-up time of 19.8 months, pts with NGS MRD > 10-4 had a median RFS of 19.8 months and pts with NGS MRD < 10-4 had a median RFS of 14.8 months. The log-rank test comparing RFS between these two groups was not statistically significant (p= 0.18). Persistent NGS MRD at post-induction had a PPV for relapse of only 18%. At post-consolidation, 7 pts had NGS MRD > 10-4, 4 pts had NGS MRD < 10-4, and 2 pts had undetectable MRD by NGS. With a median follow-up time of 17.3 months, pts with NGS MRD > 10-4 had a median RFS of 15.3 months and pts with NGS MRD < 10-4 or undetectable had a median RFS of 20.6 months. The log-rank test comparing RFS between these two groups was not statistically significant (p= 0.6). Persistent NGS MRD at post-consolidation had a PPV for relapse of only 27%. Conclusion: Despite statistically significant linear correlation between MFC and NGS MRD testing, there were no RFS differences between pts with NGS MRD > 10-4 vs NGS MRD < 10-4. All patients had persistent NGS MRD post-induction, which is markedly lower than the reported 20-25% NGS undetectable MRD rate in B-ALL post-induction. Persistent NGS MRD has low PPV for relapse in T-ALL, which limits its utility in clinical decision making for this population.
Somatic co‐alteration signatures are prognostic in high‐grade TP53‐mutated myeloid neoplasms
Symes, Emily , Sojitra, Payal , Patel, Anand , Hasan, Faheema , Zhou, Qianghua , Findley, Anthony, Badar, Talha , Tariq, Hamza , Chang, Hong , Bell, Robert , Perry, Anamarija M. , Menon, Madhu P , Patel, Anand , Badar, Talha , Tariq, Hamza , Chang, Hong , Perry, Anamarija M , Venkataraman, Girish , Zhou, Qianghua , Wang, Peng , Ghosh, Sharmila , Roloff, Gregory W. , Findley, Anthony, Zhang, Jingjing

British Journal of Haematology | November 18, 2024 | Volume: 206 | Issue: 4 | Pages: 1103-1108

10.1111/bjh.19895 Get It

SummaryTo assess the relevance of co‐occurring somatic mutations in TP53‐mutated myeloid neoplasms with ≥10% blasts, we pooled 325 individuals from 10 centres. We focused on comparing three published somatic co‐alteration signatures comprising (1) nine MDS‐related genes (‘ICC‐MDSR’), (2) ICC‐MDSR + additional secondary mutations‐related genes (‘Tazi signature’) and (3) EPI6 (comprising six genes). Outcomes examined were 24‐month overall survival (OS24) and front‐line complete response (CR1). The median age was 69 years with 77% receiving front‐line hypomethylating agents (HMA). All three signatures ICC‐MDSR (p = 0.009), Tazi signature (p = 0.001) and EPI6 (p = 0.025) predicted inferior CR1. In the low‐intensity (HMA) subgroup, only Tazi signature (p = 0.026) predicted inferior CR1. In OS24 analysis of the HMA‐treated subgroup (N = 200), only Tazi signature was adverse (hazard ratio, HR = 1.6 [1.1–2.2]; p = 0.011). However, a forward stepwise multivariable age‐adjusted Cox model including all three signatures picked EPI6 as the sole significant adverse predictor in the entire cohort (p = 0.0001) as well as within the HMA‐treated subgroup (p = 0.0071). These data confirm the value of testing co‐occurring somatic alterations even within a high‐grade TP53‐mutated myeloid neoplasm cohort.
Impact of induction regimens intensity and allogeneic stem cell transplantation on survival of patients with Philadelphia chromosome‐positive acute lymphoblastic leukemia: A multi‐institutional study
Badar, Talha , Narra, Ravi , Shallis, Rory M. , Fahad, Sheikh, Hunter, Cameron J. , Kota, Vamsi , Jonas, Brian A. , Desai, Shreya, Correia, Guilherme Sacchi de Camargo, Patel, Anand , Palmisiano, Neil , Curran, Emily , Litzow, Mark R. , Hunter, Cameron , Kota, Vamsi , Jonas, Brian , De Camargo Correia, Guilherme Sacchi, Patel, Anand , Advani, Anjali S , Litzow, Mark R. , Badar, Talha , Mims, Alice S , Heckman, Michael G. , Othman, Tamer , DuVall, Adam , Omer, Zulfa , Advani, Anjali S. , Atallah, Ehab

American Journal of Hematology | September 10, 2024 | Volume: 99 | Issue: 12 | Pages: 2388-2391

10.1002/ajh.27475 Get It