Citations

Showing 10 of 107850 citations.

A DNA Damage-Regulated BRCT-Containing Protein, TopBP1, Is Required for Cell Survival
Yamane, Kazuhiko, Wu, Xianglin, Chen, Junjie

Mayo Clinic

Molecular and Cellular Biology | July 27, 2002 | Volume: 22 | Issue: 2 | Pages: 555-566

10.1128/mcb.22.2.555-566.2002 | PMID 11756551 Get It

In Vitro and In Vivo Infection of Neural Cells by a Recombinant Measles Virus Expressing Enhanced Green Fluorescent Protein
Duprex, W. Paul , McQuaid, Stephen , Roscic-Mrkic, Branka, Cattaneo, Roberto , Mccallister, Cecilia, Rima, B. K. , Duprex, W Paul

Mayo Clinic

Journal of Virology | July 27, 2002 | Volume: 74 | Issue: 17 | Pages: 7972-7979

10.1128/jvi.74.17.7972-7979.2000 | PMID 10933705 Get It

ABSTRACT This study focused on the in vitro infection of mouse and human neuroblastoma cells and the in vivo infection of the murine central nervous system with a recombinant measles virus. An undifferentiated mouse neuroblastoma cell line (TMN) was infected with the vaccine strain of measles virus (MVeGFP), which expresses enhanced green fluorescent protein (EGFP). MVeGFP infected the cells, and cell-to-cell spread was studied by virtue of the resulting EGFP autofluorescence, using real-time confocal microscopy. Cells were differentiated to a neuronal phenotype, and extended processes, which interconnected the cells, were observed. It was also possible to infect the differentiated neuroblastoma cells (dTMN) with MVeGFP. Single autofluorescent EGFP-positive cells were selected at the earliest possible point in the infection, and the spread of EGFP autofluorescence was monitored. In this instance the virus used the interconnecting processes to spread from cell to cell. Human neuroblastoma cells (SH-SY-5Y) were also infected with MVeGFP. The virus infected these cells, and existing processes were used to initiate new foci of infection at distinct regions of the monolayer. Transgenic animals expressing CD46, a measles virus receptor, and lacking interferon type 1 receptor gene were infected intracerebrally with MVeGFP. A productive infection ensued, and the mice exhibited clinical signs of infection, such as ataxia and an awkward gait, identical to those previously observed for the parental virus (Edtag). Mice were sacrificed, and brain sections were examined for EGFP autofluorescence by confocal scanning laser microscopy over a period of 6 h. EGFP was detected in discrete focal regions of the brain and in processes, which extended deep into the parenchyma. Collectively, these results indicate (i) that MVeGFP can be used to monitor virus replication sensitively, in real time, in animal tissues, (ii) that infection of ependymal cells and neuroblasts provides a route by which measles virus can enter the central nervous system in mouse models of encephalitis, and (iii) that upon infection, the virus spreads transneuronally.
Comparative Quantitation of Cytomegalovirus (CMV) DNA in Solid Organ Transplant Recipients with CMV Infection by Using Two High-Throughput Automated Systems
Brown, Robert A. , Espy, Mark J., Kremers, Walter K. , Groettum, Cynthia, Smith, Thomas F., Payá, Carlos V., Razonable, Raymund R. , Rivero, Antonio , Wilson, Jennie , Kremers, Walter K

Mayo Clinic

Journal of Clinical Microbiology | July 27, 2002 | Volume: 39 | Issue: 12 | Pages: 4472-4476

10.1128/jcm.39.12.4472-4476.2001 | PMID 11724864 Get It

ABSTRACT Cytomegalovirus (CMV) DNA quantitation in clinical specimens is progressively becoming a cornerstone in the diagnosis and management of CMV infection in the immunocompromised host. We evaluated two automated and reproducible PCR tests, the LightCycler (Roche Molecular Biochemicals, Indianapolis, Ind.) and the COBAS AMPLICOR CMV Monitor (Roche Diagnostics, Pleasanton, Calif.), for the detection of CMV DNA in blood samples from transplant recipients with CMV infection as determined by shell vial culture. Following a log transformation analysis, the mean CMV DNA in plasma (PL), whole blood (WB), peripheral blood leukocytes (PBL), and peripheral blood mononuclear cells (PBMC) using the LightCycler was 6.79 copies per ml, 7.23 copies per ml, 6.38 copies per 2 × 10 6 cells, and 6.27 copies per 2 × 10 6 cells, respectively. This compares to 7.86 copies per ml, 8.37 copies per ml, 7.59 copies per 2 × 10 6 cells, and 7.44 copies per 2 × 10 6 cells, respectively, using COBAS AMPLICOR CMV Monitor. While higher CMV DNA levels were observed for the various blood compartments analyzed using COBAS AMPLICOR CMV Monitor, a high degree of correlation was evident between the two automated systems (jackknife correlation r = PL 0.77 [95% confidence interval (CI); 0.64, 0.90], WB 0.77 [95% CI; 0.62, 0.92], PBL 0.77 [95% CI; 0.67, 0.88], and PBMC 0.81 [95% CI; 0.72, 0.89], all P < 0.001). Therefore, we conclude that either automated diagnostic system is accurate for CMV DNA quantitation.
Sequence-Specific Transcriptional Repression by KS1, a Multiple-Zinc-Finger–Krüppel-Associated Box Protein
Gebelein, Brian , Urrutia, Raúl

Mayo Clinic

Molecular and Cellular Biology | July 27, 2002 | Volume: 21 | Issue: 3 | Pages: 928-939

10.1128/mcb.21.3.928-939.2001 | PMID 11154279 Get It

A Conserved α-Helical Motif Mediates the Interaction of Sp1-Like Transcriptional Repressors with the Corepressor mSin3A
Zhang, Jin‐San , Moncrieffe, Martin C. , Kaczynski, Joanna, Ellenrieder, Volker, Prendergast, Franklyn G., Urrutia, Raúl

Mayo Clinic

Molecular and Cellular Biology | July 27, 2002 | Volume: 21 | Issue: 15 | Pages: 5041-5049

10.1128/mcb.21.15.5041-5049.2001 | PMID 11438660 Get It

Phosphorylation of ETS Transcription Factor ER81 in a Complex with Its Coactivators CREB-Binding Protein and p300
Papoutsopoulou, Stamatia , Janknecht, Ralf

Mayo Clinic

Molecular and Cellular Biology | July 27, 2002 | Volume: 20 | Issue: 19 | Pages: 7300-7310

10.1128/mcb.20.19.7300-7310.2000 | PMID 10982847 Get It

Direct Detection of Legionella Species from Bronchoalveolar Lavage and Open Lung Biopsy Specimens: Comparison of LightCycler PCR, In Situ Hybridization, Direct Fluorescence Antigen Detection, and Culture
Hayden, Randall T. , Uhl, J. R., Qian, Xiang , Hopkins, Marlene K., Aubry, MC , Lloyd, Ricardo V., Cockerill, F. R., Limper, Andrew H. , Cockerill, Franklin R., Hayden, Randall T

Mayo Clinic

Journal of Clinical Microbiology | July 27, 2002 | Volume: 39 | Issue: 7 | Pages: 2618-2626

10.1128/jcm.39.7.2618-2626.2001 | PMID 11427579 Get It

ABSTRACT We developed a rapid thermocycling, real-time detection (also known as real-time PCR) method for the detection of Legionella species directly from clinical specimens. This method uses the LightCycler (Roche Molecular Biochemicals, Indianapolis, Ind.) and requires approximately 1 to 2 h to perform. Both a Legionella genus PCR assay and Legionella pneumophila species-specific PCR assay were designed. A total of 43 archived specimens from 35 patients were evaluated, including 19 bronchoalveolar lavage (BAL) specimens and 24 formalin-fixed, paraffin-embedded open lung biopsy specimens. Twenty-five of the specimens were culture-positive for Legionella (9 BAL specimens and 16 tissue specimens). BAL specimens were tested by LightCycler PCR (LC-PCR) methods and by a direct fluorescent antibody (DFA) assay, which detects L. pneumophila serogroups 1 to 6 and several other Legionella species. Tissue sections were tested by the two LC-PCR methods, by DFA, by an in situ hybridization (ISH) assay, specifically designed to detect L. pneumophila , and by Warthin-Starry (WS) staining. The results were compared to the “gold standard” method of bacterial culture. With BAL specimens the following assays yielded the indicated sensitivities and specificities, respectively: Legionella genus detection by Legionella genus LC-PCR, 100 and 100%; Legionella genus detection by DFA assay, 33 and 100%; and L. pneumophila detection by L. pneumophila species-specific LC-PCR, 100 and 100%. With open lung biopsy specimens the following assays yielded the indicated sensitivities and specificities, respectively: Legionella genus detection by LC-PCR 68.8 and 100%; Legionella genus detection by DFA assay, 44 and 100%; Legionella genus detection by WS staining, 63 and 100%; L. pneumophila species-specific detection by LC-PCR, 17 and 100%; and L. pneumophila species-specific detection by ISH, 100 and 100%. The analytical sensitivity of both LC-PCR assays was <10 CFU/reaction. LC-PCR is a reliable method for the direct detection of Legionella species from BAL specimens. The Legionella genus LC-PCR assay could be performed initially; if positive, L. pneumophila species-specific LC-PCR could then be performed (if species differentiation is desired). The speed with which the LC-PCR procedure can be performed offers significant advantages over both culture-based methods and conventional PCR techniques. In contrast, for the methods evaluated, culture was the best for detecting multiple Legionella species in lung tissue. WS staining, Legionella genus LC-PCR, and L. pneumophila species-specific ISH were useful as rapid tests with lung tissue.
Detection of Herpes Simplex Virus DNA in Genital and Dermal Specimens by LightCycler PCR after Extraction using the IsoQuick, MagNA Pure, and BioRobot 9604 Methods
Espy, Mark J., Rys, Paul N., Wold, Arlo D., Uhl, James R., Sloan, Lynne M., Jenkins, G. Douglas , Ilstrup, Duane M., Cockerill, F. R., Patel, Robin , Rosenblatt, Jon E., Smith, Thomas F., Cockerill, Franklin R., Patel, Robin

Mayo Clinic

Journal of Clinical Microbiology | July 27, 2002 | Volume: 39 | Issue: 6 | Pages: 2233-2236

10.1128/jcm.39.6.2233-2236.2001 | PMID 11376062 Get It

ABSTRACT We evaluated two automated systems, MagNA Pure (Roche Molecular Biochemicals, Indianapolis, Ind.) and BioRobot 9604 (Qiagen, Inc., Chatsworth, Calif.) as effective replacements for the manual IsoQuick method (Orca Research, Inc., Bothell, Wash.) for extraction of herpes simplex virus (HSV) DNA from dermal and genital tract specimens prior to analysis by LightCycler PCR. Of 198 specimens (152 genital, 46 dermal), 92 (46.2%) were positive for HSV DNA by LightCycler PCR after automated extraction of specimens with either the MagNA Pure or BioRobot 9604 instrument. The manual IsoQuick method yielded HSV DNA (total n = 95) from three additional specimens that were negative by the automated method ( P = 0.25, sign test). Although the mean numbers of LightCycler PCR cycles required to reach positivity differed statistically significantly among all three of the methods of extraction, the estimated means differed by no more than 1.5 cycles ( P < 0.05). Seventy (76%) of the 92 specimens that were LightCycler PCR positive by all three extraction methods were also positive by shell vial cell culture assay. HSV DNA was detected by a lower LightCycler PCR cycle number (26.1 cycles) in specimens culture positive for the virus than in culture-negative samples (33.3 cycles) ( P < 0.0001). The manual IsoQuick and automated MagNA Pure and BioRobot 9604 methods provide standardized, reproducible extraction of HSV DNA for LightCycler PCR. The decision to implement a manual versus an automated procedure depends on factors such as costs related to the number of specimens processed rather than on the minimal differences in the technical efficiency of extraction of nucleic acids among these methods.
Mycobacterium triplex Infection in a Liver Transplant Patient
Hoff, Elsebeth, Sholtis, Mary, Procop, Gary W. , Sabella, Camille, Goldfarb, Johanna , Wyllie, Robert , Cunningham, Ronan, Stockman, L, Hall, Gerri S.

Mayo Clinic

Journal of Clinical Microbiology | July 27, 2002 | Volume: 39 | Issue: 5 | Pages: 2033-2034

10.1128/jcm.39.5.2033-2034.2001 | PMID 11326044 Get It

ABSTRACT Mycobacterium triplex was first named in 1996 as an acid-fast bacillus with features that most resemble Mycobacterium simiae and Mycobacterium avium-intracellulare complex but which possesses a distinct mycolic acid pattern as well as a distinctive 16S rRNA hypervariable region. It has been isolated from lymph node, sputum, and cerebrospinal fluid specimens, but to date only rare clinical cases of this organism have been reported in the literature. The following is a case report of M. triplex that was isolated from the pericardial and peritoneal fluid of a 13-year-old female liver transplant patient.
Evaluation of ColorPAC Giardia/Cryptosporidium Rapid Assay and ProSpecT Giardia/Cryptosporidium Microplate Assay for Detection of Giardia and Crypto
Katanik, M. T., Schneider, Susan K., Rosenblatt, Jon E., Hall, Geraldine S., Procop, Gary W.

Mayo Clinic

Journal of Clinical Microbiology | July 27, 2002 | Volume: 39 | Issue: 12 | Pages: 4523-4525

10.1128/jcm.39.12.4523-4525.2001 | PMID 11724874 Get It

ABSTRACT Detection of Giardia and Cryptosporidium in clinical stool specimens using the ColorPAC and ProSpecT enzyme immunoassays revealed 98.7% agreement for Giardia detection and 98.1% agreement for Cryptosporidium detection. Sensitivities were uniformly 100%. The specificities of the ColorPAC immunoassay for Giardia and Cryptosporidium detection were 100 and 99.5%, respectively, and those for the ProSpecT assay were 98.4 and 98.6%, respectively. The false-positive reactions with the ProSpecT assay occurred with specimens that were grossly bloody.