Prendergast, Franklyn G.

Abstract Imatinib mesylate (imatinib, Gleevec®, Novartis, Basel, Switzerland) inhibits T cells in vitro and in vivo (Dietz et al., Blood104: 1094–1099, 2004; Cwynarski et al., Leukemia18: 1332–1339, 2004). The drug blocks T cell cycle progression rather uniquely as it neither inhibits expression of CD69, an early marker of T cell activation, nor induces apoptosis. To characterize the molecular effects of imatinib leading to this mode of T-cell inhibition, we measured the changes in transcriptome (by Affymetrix U133 chips), proteome and phosphoproteome (by Western blotting, differential phosphoprotein expression and mass spectrometry). We found that phytohemagglutinin activated T cells pre-treated with imatinib had reduced expression of 983 transcripts and increased expression of 271 transcripts when compared to untreated PHA activated T cells by the factor of 1.5 or more (p<0.05). Among the prominently down-regulated transcripts were granzyme B, CTLA-4 and IL-2-receptor α-chain (CD25), all characteristic of activated T cells, as well as cyclins D2 and D3 and cyclin-dependent kinases 3, 4 and 7, the molecules regulating cell cycle progression. Among the up-regulated transcripts were Kruppel-like transcription factors 2 and 7, and p27, a finding compatible with the observed cell cycle inhibition. Furthermore, we selected and identified 30 proteins from 2-D gels that were up-regulated and/or hyperphosphorylated in imatinib treated activated T cells. Among these were four heterogeneous ribonucleoproteins, three lamins and γ-actin, all components of the nucleoskeleton at the interface of chromatin and inner nuclear membrane and involved in replication and transcription (Herrmann and Foisner, Cell. Mol. Life Sci.60: 1607–1612, 2003; Shumaker et al. Curr. Opinion Cell Biol.15: 358–366, 2003). Thus, imatinib-borne interference with T cell signal transduction affects the nuclear structure indicating for the first time that nucleoskeleton structural changes are associated with T cell activation status.

Abstract Background: Folate receptor (FR) is a recently recognized tumor marker that is being investigated for targeted delivery of drugs, imaging of cancer cells, and tumor immunotherapy. The small size of the molecule, simple conjugation chemistry and lack of immunogenicity make folate an ideal candidate for targeted delivery to tumors bearing the FR (Lu Y, Low PS. Folate-mediated delivery of macromolecular anticancer therapeutic agents. Adv Drug Deliv Rev. 2002 Sep 13;54(5):675–93). FR is overexpressed in 90% of ovarian cancers and in other human tumors including endometrial, colorectal, breast, and neuroendocrine carcinomas, it is negatively or only weakly expressed in most normal tissues including some myeloid cells. In view of the above we wished to learn if overexpression of FR by marrow plasma cells (PC) might differentiate MM from MGUS and SMM. Methods: We obtained marrow biopsy sections from 20 patients each with MM, MGUS, or SMM, and 11 normals and stained them by immunohistochemistry using a FR-beta antibody. Expression was graded 0 (negative), 1 (equivocal), 2 (positive) or 3 (strong positive) based on immunohistochemical staining of marrow PC. We recorded the percent PC, percent positive PC, and the staining of other cell types including myeloid, erythroid, lymphocytes, macrophages, megakaryocytes and control tissues. Results: PC of patients with MM positively expressed FR compared to MGUS, SMM and normal PC (p<0.0001) (Figure 1 and 2). Of interest, 6 of 20 SMM patients showed positive expression. Maturing myeloid cells were also positive, acting as internal positive controls. Macrophages were often positive; some endothelial cells were positive; early erythroid precursors were rarely positive; megakaryocytes, maturing erythroid precursors and lymphocytes did not express FR. The chromosomal location of the FOLR gene cluster is 11q13. Gene expression arrays of purified PC failed to show evidence of overexpression of FOLR1, FOLR2, or FOLR3. We are currently performing Western blots to examine levels of protein product of purified PC. Conclusion: Immunohistochemistal studies show differential expression of FR in MM PC compared to absent or equivocal expression in MGUS and normal PC and variable expression in SMM. The data suggest that FR may be used as a diagnostic tumor marker and has implications for development of folate-based tumor imaging, drug delivery, and immunotherapy. Figure Figure Figure Figure

AbstractIdeas about personalized medicine are underpinned in part by evolutionary biology's Modern Synthesis. In this essay we link personalized medicine to the efforts of the early statistical investigators who quantified the heritability of human phenotype and then attempted to reconcile their observations with Mendelian genetics. As information about the heritability of common diseases was obtained, similar efforts were directed at understanding the genetic basis of disease phenotypes. These ideas were part of the rationale driving the Human Genome Project and subsequently the personalized medicine movement. In this context, we discuss: (1) the current state of the genotype–phenotype relationship in humans, (2) the common‐disease–common‐variant hypothesis, (3) the current ability of ‘omic’ information to inform clinical decision making, (4) emerging ideas about the therapeutic insight available from rare genetic variants, and (5) the social and behavioural barriers to the wider potential success of personalized medicine. There are significant gaps in knowledge as well as conceptual, intellectual, and philosophical limitations in each of these five areas. We then provide specific recommendations to mitigate these limitations and close by asking if it is time for the biomedical research community to ‘stop chasing Mendel?’

Abstract A drug-induced apoptosis assay, termed the microculture-kinetic (MiCK) assay, has been developed. Blinded clinical trials have shown higher response rates and longer survival in groups of patients with acute myelocytic leukemia and epithelial ovarian cancer who have been treated with drugs that show high apoptosis in the MiCK assay. Unblinded clinical trials in multiple tumor types have shown that the assay will be used frequently by clinicians to determine treatment, and when used, results in higher response rates, longer times to relapse, and longer survivals. Model economic analyses suggest possible cost savings in clinical use based on increased generic drug use and single-agent substitution for combination therapies. Two initial studies with drugs in development are promising. The assay may help reduce costs and speed time to drug approval. Correlative studies with molecular biomarkers are planned. This assay may have a role both in personalized clinical therapy and in more efficient drug development. Cancer Res; 72(16); 3901–5. ©2012 AACR.

Abstract —Communication between the cytoplasm and nucleoplasm of cardiac cells occurs by molecular transport through nuclear pores. In lower eukaryotes, nuclear transport requires the maintenance of cellular energetics and ion homeostasis. Although heart muscle is particularly sensitive to metabolic stress, the regulation of nuclear transport through nuclear pores in cardiomyocytes has not yet been characterized. With the use of laser confocal and atomic force microscopy, we observed nuclear transport in cardiomyocytes and the structure of individual nuclear pores under different cellular conditions. In response to the depletion of Ca 2+ stores or ATP/GTP pools, the cardiac nuclear pore complex adopted 2 distinct conformations that led to different patterns of nuclear import regulation. Depletion of Ca 2+ indiscriminately prevented the nuclear import of macromolecules through closure of the nuclear pore opening. Depletion of ATP/GTP only blocked facilitated transport through a simultaneous closure of the pore and relaxation of the entire complex, which allowed other molecules to pass into the nucleus through peripheral routes. The current study of the structural plasticity of the cardiac nuclear pore complex, which was observed in response to changes in cellular conditions, identifies a gating mechanism for molecular translocation across the nuclear envelope of cardiac cells. The cardiac nuclear pore complex serves as a conduit that differentially regulates nuclear transport of macromolecules and provides a mechanism for the control of nucleocytoplasmic communication in cardiac cells, in particular under stress conditions associated with disturbances in cellular bioenergetics and Ca 2+ homeostasis.

Abstract Polarizing effects of productive dendritic cell (DC)–T-cell interactions on DC cytoskeleton have been known in some detail, but the effects on DC membrane have been studied to a lesser extent. We found that T-cell incubation led to DC elongation and segregation of characteristic DC veils to the broader pole of the cell. On the opposite DC pole, we observed a novel membrane feature in the form of bundled microvilli. Each villus was approximately 100 nm in diameter and 600 to 1200 nm long. Microvilli exhibited high density of antigen-presenting molecules and costimulatory molecules and provided the physical basis for the multifocal immune synapse we observed during human DC and T-cell interactions. T cells preferentially bound to this site in clusters often contained both CD4+ and CD8+ T cells.

A continuously tuneable, quasi-continuous-wave (cw), ultraviolet source for resonance Raman spectroscopy has been developed. The third and fourth harmonics of a picosecond mode-locked titanium: sapphire laser were generated in nonlinear crystals. The pulses which resulted from these processes were spectrally narrow (10–15 cm −1 ) and had low peak powers (<1 kW), while the system as a whole provides high average powers. Fourth-harmonic wavelengths were generated from 208 to 230 nm with average powers from 15 to 40 mW, while the third harmonic ranged from 255 to 305 nm with over 90 mW of power. The UV light was well collimated and focused well, and the power was stable for hours. Resonance Raman spectra of tryptophan and phenylalanine were recorded to demonstrate the practical application of this system. Spectra with excellent signal-to-noise ratios were recorded in 6 min with no deleterious effects from nonlinear processes. The selective enhancement of tryptophan scattering in a 1:10 molar solution of tryptophan to phenylalanine makes clear the advantage of a continuously tuneable UV source. Elaboration of this system to the full tuning range of titanium: sapphire lasers will create a laser source suitable for resonance Raman spectroscopy throughout the ultraviolet region (205–400 nm).