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91 citation(s) found for "Kalli, KR".

A Degenerate HLA-DR Epitope Pool of HER-2/neu Reveals a NovelIn vivoImmunodominant Epitope, HER-2/neu88-102
Karyampudi, Lavakumar, Formicola, Courtney, Erskine, Courtney L. , Maurer, Matthew J. , Krco, Christopher J., Wettstein, Peter J., Kalli, Kimberly R., Fikes, John, Beebe, Melanie, Hartmann, Lynn C. , Ishioka, Glenn, Knutson, Keith L. , Ingle, James N. , Disis, Mary Lenora , Ferrone, Soldano , Knutson, Keith L. , Maurer, Matthew

Clinical Cancer Research | January 27, 2010 | Volume: 16 | Issue: 3 | Pages: 825-834

10.1158/1078-0432.ccr-09-2781 | PMID 20103660 Get It

AbstractPurpose: Over the past two decades, there has been significant interest in targeting HER-2/neu in immune-based approaches for the treatment of HER-2/neu+ cancers. For example, peptide vaccination using a CD8 T cell–activating HER-2/neu epitope (amino acids 369-377) is an approach that is being considered in advanced phase clinical trials. Studies have suggested that the persistence of HER-2/neu–specific CD8 T cells could be improved by incorporating human leukocyte antigen (HLA) class II epitopes in the vaccine. Our goal in this study was to identify broad coverage HLA-DR epitopes of HER-2/neu, an antigen that is highly expressed in a variety of carcinomas.Experimental Design: A combination of algorithms and HLA-DR–binding assays was used to identify HLA-DR epitopes of HER-2/neu antigen. Evidence of preexistent immunity in cancer patients against the identified epitopes was determined using IFN-γ enzyme-linked immunosorbent spot (ELIspot) assay.Results: Eighty-four HLA-DR epitopes of HER-2/neu were predicted, 15 of which had high binding affinity for ≥11 common HLA-DR molecules. A degenerate pool of four HLA-DR–restricted 15-amino acid epitopes (p59, p88, p422, and p885) was identified, against which >58% of breast and ovarian cancer patients had preexistent T-cell immunity. All four epitopes are naturally processed by antigen-presenting cells. Hardy-Weinberg analysis showed that the pool is useful in ∼84% of population. Lastly, in this degenerate pool, we identified a novel in vivo immunodominant HLA-DR epitope, HER-2/neu88-102 (p88).Conclusion: The broad coverage and natural immunity to this epitope pool suggests potential usefulness in HER-2/neu–targeting, immune-based therapies such as vaccines. Clin Cancer Res; 16(3); 825–34
Immune-Induced Epithelial to Mesenchymal Transition In vivo Generates Breast Cancer Stem Cells
Santisteban, Marta , Reiman, Jennifer M. , Behrens, Marshall D., Nassar, Aziza , Kalli, Kimberly R., Haluska, Paul , Hartmann, Lynn C. , Knutson, Keith L. , Asiedu, Michael K. , Nassar, Aziza , Ingle, James N. , Manjili, Masoud H. , Radisky, Derek C. , Ferrone, Soldano , Knutson, Keith L.

Cancer Research | March 10, 2009 | Volume: 69 | Issue: 7 | Pages: 2887-2895

10.1158/0008-5472.can-08-3343 | PMID 19276366 Get It

Abstract The breast cancer stem cell (BCSC) hypotheses suggest that breast cancer is derived from a single tumor-initiating cell with stem-like properties, but the source of these cells is unclear. We previously observed that induction of an immune response against an epithelial breast cancer led in vivo to the T-cell–dependent outgrowth of a tumor, the cells of which had undergone epithelial to mesenchymal transition (EMT). The resulting mesenchymal tumor cells had a CD24−/loCD44+ phenotype, consistent with BCSCs. In the present study, we found that EMT was induced by CD8 T cells and the resulting tumors had characteristics of BCSCs, including potent tumorigenicity, ability to reestablish an epithelial tumor, and enhanced resistance to drugs and radiation. In contrast to the hierarchal cancer stem cell hypothesis, which suggests that breast cancer arises from the transformation of a resident tissue stem cell, our results show that EMT can produce the BCSC phenotype. These findings have several important implications related to disease progression and relapse. [Cancer Res 2009;69(7):2887–95]
An HLA-DR–Degenerate Epitope Pool Detects Insulin-like Growth Factor Binding Protein 2–Specific Immunity in Patients with Cancer
Kalli, Kimberly R., Krco, Christopher J., Hartmann, Lynn C., Goodman, Karin M., Maurer, Matthew J. , Yu, Chao, Johnson, Elliot M., Erskine, Courtney L. , Wettstein, Peter J., Fikes, John, Beebe, Melanie, Ishioka, Glenn, Knutson, Keith L. , Disis, Mary Lenora , Knutson, Keith L. , Maurer, Matthew

Cancer Research | June 16, 2008 | Volume: 68 | Issue: 12 | Pages: 4893-4901

10.1158/0008-5472.can-07-6726 | PMID 18559537 Get It

AbstractRecent studies have shown the importance of helper CD4 T cells in initiating and sustaining tumor-specific CD8 T-cell immunity. This has paved the way for identifying MHC class II epitopes that could be incorporated into class I–based vaccines. In this study, the goal was to identify an HLA-DR–degenerate epitope pool derived from insulin-like growth factor binding protein 2 (IGFBP-2). IGFBP-2, a regulator of insulin-like growth factor action, is overexpressed in the majority of breast and ovarian cancers. Using algorithms, we predicted 29 HLA-DR1–binding epitopes. Binding assays targeting 15 different HLA-DRs revealed that 10 epitopes were degenerate, binding to at least four different HLA-DR variants. An IFN-γ enzyme-linked immunosorbent spot assay was used to assess immunity to these 10 epitopes in 48 patients with either breast or ovarian cancer and 18 controls. Elevated T-cell immunity in patients was detected in 4 of the 10 epitopes (IGFBP2.17, IGFBP2.22, IGFBP2.249, and IGFBP2.293). The cumulative T-cell frequency of these four epitopes was elevated in patients relative to controls. All four peptides are naturally processed and presented to CD4 T-cells. The degenerate pool of peptides covers nearly 80% of patients and may be useful for augmenting CD4 T-cell immunity in patients undergoing immunization. [Cancer Res 2008;68(12):4893–901]
The endogenous danger signal, crystalline uric acid, signals for enhanced antibody immunity
Behrens, Marshall D., Krco, Christopher J., Erskine, Courtney L. , Kalli, Kimberly R., Krempski, James , Gad, Ekram, Knutson, Keith L. , Wagner, Wolfgang , Disis, Mary Lenora , Knutson, Keith L. , Krempski, James W

Blood | November 21, 2007 | Volume: 111 | Issue: 3 | Pages: 1472-1479

10.1182/blood-2007-10-117184 | PMID 18029553 Get It

Abstract Studies have shown that the immune system can recognize self-antigens under conditions (eg, cell injury) in which the self-tissue might elaborate immune-activating endogenous danger signals. Uric acid (UA) is an endogenous danger signal recently identified to be released from dying cells. Prior work has shown that UA activates immune effectors of both the innate and adaptive immune system, including neutrophils and cytotoxic T-cell immunity. However, it was unclear whether UA could enhance antibody immunity, which was examined in this study. When added to dying tumor cells or with whole protein antigen, UA increased IgG1-based humoral immunity. Further, UA blocked growth of tumor in subsequent tumor challenge experiments, which depended on CD4, but not CD8, T cells. Sera derived from UA-treated animals enhanced tumor growth, suggesting it had little role in the antitumor response. UA did not signal for T-cell expansion or altered tumor-infiltrating leukocyte populations. Consistent with the lack of T-cell expansion, when applied to dendritic cells, UA suppressed T-cell growth factors but up-regulated B cell–activating cytokines. Understanding the nature of endogenous danger signals released from dying cells may aid in a better understanding of mechanisms of immune recognition of self.
Epithelial Ovarian Cancer:  Disease Etiology, Treatment, Detection, and Investigational Gene, Metabolite, and Protein Biomarkers
Williams, Taufika Islam , Toups, Kristina L., Saggese, Diana A., Kalli, Kimberly R., Cliby, William A. , Muddiman, David C.

Journal of Proteome Research | June 21, 2007 | Volume: 6 | Issue: 8 | Pages: 2936-2962

10.1021/pr070041v | PMID 17583933 Get It

Elevated Levels of Phosphorylated Fibrinogen-α-Isoforms and Differential Expression of Other Post-Translationally Modified Proteins in the Plasma of Ovarian Cancer Patients
Ogata, Yuko , Heppelmann, Carrie J. , Charlesworth, M. Cristine , Miller, Melinda N., Kalli, Kimberly R., Cliby, William A. , Bergen, H. Robert, Saggese, Diana A., Muddiman, David C. , Charlesworth, M. Cristine , Madden, Benjamin J.

Journal of Proteome Research | November 14, 2006 | Volume: 5 | Issue: 12 | Pages: 3318-3325

10.1021/pr060344+ | PMID 17137333 Get It

T-Cell Immunity to the Folate Receptor Alpha Is Prevalent in Women With Breast or Ovarian Cancer
Knutson, Keith L. , Krco, Christopher J., Erskine, Courtney L. , Goodman, Karin M., Kelemen, Linda E. , Wettstein, Peter J., Low, Philip S. , Hartmann, Lynn C. , Kalli, Kimberly R., Knutson, Keith L.

Journal of Clinical Oncology | August 15, 2006 | Volume: 24 | Issue: 26 | Pages: 4254-4261

10.1200/jco.2006.05.9311 | PMID 16908932 Get It

PurposeStudies have demonstrated that the generation of immunity to tumor antigens is associated with improved prognosis for many cancers. A candidate antigen is the folate receptor alpha (FRα), which is overexpressed in breast and ovarian cancers. Our goal in this study was to attain a better understanding of the extent of endogenous FRα immunity.MethodsUsing a CD4+T cell epitope prediction algorithm, we predicted promiscuous epitopes of FRα, and tested for immunity in 30 breast (n = 17) or ovarian (n = 13) cancer patients and 18 healthy donors using enzyme-linked immunospot analysis.ResultsFourteen peptides were predicted, seven each from the carboxy- and amino-terminus halves of the protein. More than 70% of patients demonstrated immunity to at least one FRα peptide. Patients responded to an average of 3 ± 0.5 peptides, whereas healthy donors responded to 1 ± 0.4 peptides (P = .004). Five peptides were recognized by more than 25% of patients. Responses to three peptides were higher (P < .05) in patients than in healthy donors, suggesting augmented immunity. Compared with healthy individuals, patients developed higher immunity to the amino-terminus half of the receptor (P = .03). There was no difference between each group in the responses to nonspecific (P = .2) and viral stimuli (P = .5). Lastly, patients demonstrated elevated levels of FRα antibodies consistent with a coordinated immune response.ConclusionThese findings demonstrate that the FRα is a target of the immune system in breast and ovarian cancer patients. Understanding which antigens are targeted by the immune system may be important for prognosis or immune-based therapies.
In vitro and In vivo Antitumor Effects of the Dual Insulin-Like Growth Factor-I/Insulin Receptor Inhibitor, BMS-554417
Haluska, Paul , Carboni, Joan M., Loegering, David A., Lee, Francis Y. , Wittman, Mark D. , Saulnier, Mark G., Frennesson, David B., Kalli, Kimberly R., Conover, Cheryl A. , Attar, Ricardo M. , Gottardis, Marco M. , Erlichman, Charles , Kaufmann, Scott H.

Cancer Research | January 5, 2006 | Volume: 66 | Issue: 1 | Pages: 362-371

10.1158/0008-5472.can-05-1107 | PMID 16397250 Get It

Abstract The insulin-like growth factor receptor (IGF-IR) and insulin receptor are either overactivated and/or overexpressed in a wide range of tumor types and contribute to tumorigenicity, proliferation, metastasis, and drug resistance. Here, we show that BMS-554417, a novel small molecule developed as an inhibitor of IGF-IR, inhibits IGF-IR and insulin receptor kinase activity and proliferation in vitro, and reduces tumor xenograft size in vivo. In a series of carcinoma cell lines, the IC50 for proliferation ranged from 120 nmol/L (Colo205) to &gt;8.5 μmol/L (OV202). The addition of stimulatory ligands was unnecessary for the antiproliferative effect in MCF-7 and OV202 cells. BMS-554417 treatment inhibited IGF-IR and insulin receptor signaling through extracellular signal-related kinase as well as the phosphoinositide 3-kinase/Akt pathway, as evidenced by decreased Akt phosphorylation at Ser473. At doses that inhibited proliferation, the compound also caused a G0-G1 arrest and prevented nuclear accumulation of cyclin D1 in response to LR3 IGF-I. In Jurkat T-cell leukemia cells, this agent triggered apoptotic cell death via the mitochondrial pathway. BMS-554417 was orally bioavailable and significantly inhibited the growth of IGF1R-Sal tumor xenografts in vivo. BMS-554417 is a member of a novel class of IGF-IR/insulin receptor inhibitors that have potential clinical applications because of their antiproliferative and proapoptotic activity in vitro and in vivo. (Cancer Res 2006; 66(1): 362-71)
Gene Expression Profiles Predict Early Relapse in Ovarian Cancer after Platinum-Paclitaxel Chemotherapy
Hartmann, Lynn C. , Lu, Karen H. , Linette, Gerald P. , Cliby, William A. , Kalli, Kimberly R., Bast, Robert C. , Stec, James , Iartchouk, Natalia, Smith, David I., Hoersch, Sebastian, Shridhar, Viji , Lillie, James W., Clark, Edwin, Damokosh, Andrew I., Gershenson, David M. , Smith, David I., Ross, Jeffrey S. , Kaufmann, Scott H. , Bast, Robert C

Clinical Cancer Research | September 21, 2005 | Volume: 11 | Issue: 6 | Pages: 2149-2155

10.1158/1078-0432.ccr-04-1673 | PMID 15788660 Get It

Abstract Purpose: Women with advanced epithelial ovarian cancer are routinely treated with platinum-paclitaxel chemotherapy following cytoreductive surgery, yet only ∼20% achieve long-term disease-free survival. We hypothesized that differences in gene expression before treatment could distinguish patients with short versus long time to recurrence after administration of platinum-paclitaxel combination chemotherapy. Experimental Design: To test this hypothesis, gene expression profiling of 79 primary surgically resected tumors from women with advanced-stage, high-grade epithelial ovarian cancer was done using cDNA microarrays containing 30,721 genes. Supervised learning algorithms were applied in an effort to develop a binary classifier that could discriminate women at risk for early (≤21 months) versus late (&gt;21 months) relapse after initial chemotherapy. Results: A 14-gene predictive model was developed using a set of training samples (n = 51) and subsequently tested using an independent set of test samples (n = 28). This model correctly predicted the outcome of 24 of the 28 test samples (86% accuracy) with 95% positive predictive value for early relapse. Conclusions: Predictive markers for early recurrence can be identified for platinum-paclitaxel combination chemotherapy in primary ovarian carcinoma. The proposed 14-gene model requires further validation.
Single-cell nonphotochemical hole burning of ovarian surface epithelial carcinoma and normal cells
Walsh, Richard J. , Matsuzaki, Satoshi , Reinot, T. , Hayes, John M. , Kalli, Kimberly R., Hartmann, Lynn C., Small, Gerald J.

Proceedings of the National Academy of Sciences | February 18, 2003 | Volume: 100 | Issue: 4 | Pages: 1685-1689

10.1073/pnas.0437668100 | PMID 12574511 Get It

Persistent spectral nonphotochemical hole-burning (NPHB) spectroscopy has recently been applied to dye molecules in cells. The sensitivity of NPHB to the nanoenvironment of the probe is well established. It has been shown that NPHB applied to bulk suspensions of cultured human cells can distinguish between normal and cancer cells. Thus, NPHB has potential as a diagnostic cancer tool. For this reason, the methodology is referred to as hole-burning imaging, by analogy with MRI. The optical dephasing time ( T 2 ) of the dye in hole-burning image replaces the proton T 1 relaxation time in MRI. In addition to the T 2 mode of operation, there are four other modes including measurement of the spectral hole growth kinetics (HGK). Reported here is that the selectivity and sensitivity of NPHB operating in the HGK mode allow for distinction between normal and carcinoma cells at the single-cell level. The ovarian cell lines are ovarian surface epithelial cells with temperature-sensitive large T antigens (analogously normal) and ovarian surface epithelial carcinoma (OV167) cells. The mitochondrial specific dye used was rhodamine 800 (Molecular Probes). This carbocationic dye is highly specific for the outer and inner membranes of mitochondria. In line with the results for bulk suspensions of the two cell lines, the hole-burning efficiency for OV167 cells was found to be significantly higher than that for normal cells. Theoretical analysis of the HGK data leads to the conclusion that the degree of structural heterogeneity for the probe–host configurations in OV167 cells is lower than in the normal cells. Possible reasons for this are given.