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921 citation(s) found for "Qi, Jun".

A conserved NAD + binding pocket that regulates protein-protein interactions during aging
Li, Jun , Bonkowski, Michael S. , Moniot, S. , Zhang, Dapeng , Hubbard, Basil P. , Ling, Alvin J. Y. , Rajman, Luis A. , Qin, Bo , Gorbunova, Vera , Aravind, L. , Steegborn, Clemens , Sinclair, David , Sinclair, David A , Lou, Zhenkun

Science | March 23, 2017 | Volume: 355 | Issue: 6331 | Pages: 1312-1317

10.1126/science.aad8242 | PMID 28336669 Get It

NAD + can influence DNA repair by modulating protein interactions.
Rectal versus left-sided colon cancers: Clinicopathological differences observed in a pooled analysis of 4,182 patients enrolled to 8 clinical trials from the ARCAD database.
Salem, Mohamed E. , Yin, Jun , Renfro, Lindsay A. , Seymour, Michel , Bokemeyer, Carsten , Heinemann, Volker , Gramont, Aimery de , Weinberg, Benjamin A. , Maughan, Tim , Adams, Richard , Cutsem, Eric Van , Falcone, Alfredo , Tebbutt, Niall C. , Díaz‐Rubio, Eduardo , Aranda, Enrique , Grothey, Axel , Marshall, John L , Sargent, Daniel J. , Seymour, Matthew T

Journal of Clinical Oncology | March 21, 2017 | Volume: 35 | Issue: 4_suppl | Pages: 675-675

10.1200/jco.2017.35.4_suppl.675 Get It

675 Background: Recent retrospective analysis of CALGB/SWOG 80405 showed that left-sided colon cancers (LCC) respond differently to biological therapy compared with right-sided tumors. However, differences between rectal cancers (RC) and LCC remain undefined. Herein, we report our exploration of differences between these two groups. Methods: Individual patient data from 4182 patients (pts) with metastatic colorectal cancers, enrolled onto 8 first-line randomized trials, were pooled. Only pts with tumor locations that were clearly defined as LCC (splenic flexure to sigmoid) or RC were included in this analysis. Differences in pt characteristics and disease factors according to LCC vs. RC were identified. The prognostic effect of primary tumor location on OS and PFS was quantified via multivariable Cox proportional hazards modeling stratified by treatment arm within each study and adjusting for age, sex, performance status, and prior surgery. Results: In total, 2,479 (59%) pts with LCC and 1,703 (41%) pts with RC were identified. Pts with RC, compared with LCC, were more likely to be male (68% vs. 62%, p < 0.001), have lung metastases (mets) (56% vs. 37%, p < 0.001), and have 2 or more metastatic sites (64% vs. 60%, p < 0.02), whereas pts with LCC were more likely to have liver mets (84% vs. 76%, p < 0.001). RC had a greater frequency of KRAS mutations (41% vs. 37%, p = 0.04) than LCC but there were no differences in the frequency of BRAF mutations (5% vs. 4%, p = 0.2). In multivariable analysis, no differences in OS or PFS were observed between pts with LCC vs. RC. While risk of death did not differ by primary tumor location, across all pts with LCC or RC, those with liver mets had a 17% increased risk of death compared to those with lung mets (HR = 1.17, p = 0.03) after adjusting for effects of other variables. Forthcoming prognostic analysis of LCC vs. RC within grouped backbone treatments (e.g., FOLFOX and FOLFIRI) is underway. Conclusions: Tumors arising in the rectum may carry clinical and molecular features that are distinct from LCC. Further investigations are warranted to determine whether RC should be treated with the same chemo backbone and biological therapy as LCC.
Echocardiographic diagnosis of total or left congenital pericardial absence with positional change
Kim, Hyung‐Kwan , Jung, Ji-Hyun, Yoon, Yeonyee E. , Park, Jun-Bin, Lee, Seung‐Pyo , Kim, Yong‐Jin , Cho, Goo-Young, Oh, Jae K. , Park, Jun‐Bean , Kim, Min-Jeong , Yoon, Yeonyee Elizabeth , Kim, Hack‐Lyoung , Cho, Goo-Young, Sohn, Daewon , Kim, Hyung-Kwan

Heart | March 9, 2017 | Volume: 103 | Issue: 15 | Pages: 1203-1209

10.1136/heartjnl-2016-310870 | PMID 28280147 Get It

Objectives Congenital absence of the pericardium (CAP) is often confused with other conditions presenting with right ventricular dilatation and usually warrants CT or cardiac MR (CMR) to confirm. It would be desirable to have more specific echocardiographic criteria to provide a conclusive diagnosis. Methods 11 patients who were diagnosed with CAP (four patients with total CAP) based on CT/CMR were consecutively enrolled. Thirteen patients with atrial septal defect (ASD) and 16 normal subjects served as controls. To investigate spatial changes of heart in the thoracic cavity in CAP, following echocardiographic measurements were made in the left and right decubitus positions: the angle between the ultrasound beam and the left ventricular posterior wall (Angle-PW) in end-diastole at the parasternal long axis, and the distance between the chest wall and the most distal part of the left ventricular posterior wall (Distance-PW) at the parasternal mid-ventricular short axis. Results Angle-PW in patients with CAP were significantly greater than in those with ASD (100.1±12.5° vs 74.5±8.6°, p<0.017) or in normal subjects (100.1±12.5° vs 69.9±7.6°, p<0.017) at the left decubitus, and the difference in Angle-PW according to posture (left vs right) was significantly greater in CAP compared with the other groups (CAP 20.7±12.7°, ASD 0.31±1.80°, normal 0.31±1.40°, all p<0.017). The differences in Distance-PW according to patient position (CAP 2.43±0.77°, ASD 0.42±0.45°, normal 0.26±0.55°) or cardiac cycle in each position (left: CAP 1.60±0.76°, ASD 0.41±0.27°, normal 0.17±0.12°; right: CAP 0.70±0.32°, ASD 0.22±0.19°, normal 0.22±0.13°) were significantly higher in the CAP group than in the other groups (all p<0.017). Conclusions Patients with CAP have dynamic alteration in cardiac position depending on posture, which is not observed in ASD or in normal controls. Hence, total or left-sided CAP can be reliably diagnosed with positional changes during routine echocardiography.
Potential mechanisms of effects of serum‐derived bovine immunoglobulin/protein isolate therapy in patients with diarrhea‐predominant irritable bowel syndrome
Valentin, Nelson, Camilleri, Michael , Carlson, Paula, Harrington, Sean C., Eckert, Deborah J., O’Neill, Jessica, Burton, Duane D. , Shaw, Audrey L., Eckert, Deborah, Burton, Duane, Chen, Jun , Acosta, Andrés

Physiological Reports | March 9, 2017 | Volume: 5 | Issue: 5 | Pages: No page available

10.14814/phy2.13170 | PMID 28275113 Get It

AbstractSerum‐derived bovine immunoglobulin/protein isolate (SBI), an oral nutritional therapy, is efficacious in diverse diarrheal diseases. In an open‐label study in 15 patients with irritable bowel syndrome‐diarrhea (IBS‐D), we evaluated effects of SBI (5.0 g, twice a day) for 8 weeks on safety, on bowel function and abdominal pain, tryptophan metabolism (K:T ratio), intestinal permeability (13C‐mannitol and lactulose excretion), bile acid synthesis (fasting serum FGF‐19 and C4), duodenal and stool microbiome, and the expression of 90 genes related to inflammation, immune function, and tight junctions in duodenal mucosa. Statistical analysis (paired tests, baseline vs. treatment) was based on intention to treat (ITT) principles. One of 15 Caucasian patients (13F, 2M, age 40.3 ± 2.3y, BMI 34.3 ± 3.0 kg/m2) withdrew without completing studies. There were improvements in stools/day (decrease, P < 0.001), ease of passage (P = 0.035), and evacuation (P = 0.004) with SBI therapy. Worst pain severity was numerically reduced in last 2 weeks' treatment (P = 0.078). Duodenal mucosal mRNA expression; serum C4, FGF‐19, and KT ratio; small bowel or colon permeability; and stool microbiome were not significantly different after SBI therapy, compared to baseline. In duodenal brushings, there was considerable microbiota structure difference (β diversity analysis P = 0.072, UniFrac) and, on taxonomic analysis, increased abundance of Proteobacteria Burkholderiales, Firmicutes Catonella, and unclassified genus organisms with SBI therapy. Thus, SBI therapy for 8 weeks in IBS‐D patients is associated with improved bowel function; the mechanism of benefit is unclear, though there were microbiota structure differences in duodenal brushings. Further studies in patients with low‐grade inflammation and intestinal barrier dysfunction at baseline are indicated.
Cardiovascular safety of phosphodiesterase inhibitors for treating erectile dysfunction in elderly men
Xu, Rende , He, Ben , Pu, Jun , Peterson, Karen M.

Cochrane Database of Systematic Reviews | March 6, 2017 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.1002/14651858.cd011178.pub2 Get It

Comparison of Fecal Collection Methods for Microbiota Studies in Bangladesh
Vogtmann, Emily , Chen, Jun , Chen, Yu , Eunes, Mahbubul, Ahmed, Alauddin , Naher, Jabun, Rahman, Anisur, Amir, Amnon , Shi, Jianxin , Abnet, Christian C. , Nelson, Heidi , Knight, Rob , Ahsan, Habibul , Chia, Nicholas , Kibriya, Muhammad Ghulam , Islam, Tariqul , Chia, Nicholas , Sinha, Rashmi R. , Abnet, Christian C , Chen, Yu

Applied and Environmental Microbiology | March 4, 2017 | Volume: 83 | Issue: 10 | Pages: No page available

10.1128/aem.00361-17 | PMID 28258145 Get It

ABSTRACT To our knowledge, fecal microbiota collection methods have not been evaluated in low- and middle-income countries. Therefore, we evaluated five different fecal sample collection methods for technical reproducibility, stability, and accuracy within the Health Effects of Arsenic Longitudinal Study (HEALS) in Bangladesh. Fifty participants from the HEALS provided fecal samples in the clinic which were aliquoted into no solution, 95% ethanol, RNAlater, postdevelopment fecal occult blood test (FOBT) cards, and fecal immunochemical test (FIT) tubes. Half of the aliquots were frozen immediately at −80°C (day 0) and the remaining samples were left at ambient temperature for 96 h and then frozen (day 4). Intraclass correlation coefficients (ICC) were calculated for the relative abundances of the top three phyla, for two alpha diversity measures, and for four beta diversity measures. The duplicate samples had relatively high ICCs for technical reproducibility at day 0 and day 4 (range, 0.79 to 0.99). The FOBT card and samples preserved in RNAlater and 95% ethanol had the highest ICCs for stability over 4 days. The FIT tube had lower stability measures overall. In comparison to the “gold standard” method using immediately frozen fecal samples with no solution, the ICCs for many of the microbial metrics were low, but the rank order appeared to be preserved as seen by the Spearman correlation. The FOBT cards, 95% ethanol, and RNAlater were effective fecal preservatives. These fecal collection methods are optimal for future cohort studies, particularly in low- and middle-income countries. IMPORTANCE The collection of fecal samples in prospective cohort studies is essential to provide the opportunity to study the effect of the human microbiota on numerous health conditions. However, these collection methods have not been adequately tested in low- and middle-income countries. We present estimates of technical reproducibility, stability at ambient temperature for 4 days, and accuracy comparing a “gold standard” for fecal samples in no solution, 95% ethanol, RNAlater, postdevelopment fecal occult blood test cards, and fecal immunochemical test tubes in a study conducted in Bangladesh. Fecal occult blood test cards and fecal samples stored in 95% ethanol or RNAlater adequately preserve fecal samples in this setting. Therefore, new studies in low- and middle-income countries should include collection of fecal samples using fecal occult blood test cards, 95% ethanol, or RNAlater for prospective cohort studies.
Involvement of c-Jun N-Terminal Kinase in TNF-α–Driven Remodeling
Eurlings, Irene M. J., Reynaert, Niki L. , Wetering, Cheryl van de , Aesif, Scott W. , Mercken, Evi M. , Cabo, Rafael de , Velden, Jos van der , Janssen‐Heininger, Yvonne , Wouters, Emiel F.�M. , Dentener, Mieke A., de Cabo, Rafael

American Journal of Respiratory Cell and Molecular Biology | March 1, 2017 | Volume: 56 | Issue: 3 | Pages: 393-401

10.1165/rcmb.2015-0195oc | PMID 27875656 Get It

Abstract Lung tissue remodeling in chronic obstructive pulmonary disease (COPD) is characterized by airway wall thickening and/or emphysema. Although the bronchial and alveolar compartments are functionally independent entities, we recently showed comparable alterations in matrix composition comprised of decreased elastin content and increased collagen and hyaluronan contents of alveolar and small airway walls. Out of several animal models tested, surfactant protein C (SPC)-TNF-α mice showed remodeling in alveolar and airway walls similar to what we observed in patients with COPD. Epithelial cells are able to undergo a phenotypic shift, gaining mesenchymal properties, a process in which c-Jun N-terminal kinase (JNK) signaling is involved. Therefore, we hypothesized that TNF-α induces JNK-dependent epithelial plasticity, which contributes to lung matrix remodeling. To this end, the ability of TNF-α to induce a phenotypic shift was assessed in A549, BEAS2B, and primary bronchial epithelial cells, and phenotypic markers were studied in SPC–TNF-α mice. Phenotypic markers of mesenchymal cells were elevated both in vitro and in vivo, as shown by the expression of vimentin, plasminogen activator inhibitor-1, collagen, and matrix metalloproteinases. Concurrently, the expression of the epithelial markers, E-cadherin and keratin 7 and 18, was attenuated. A pharmacological inhibitor of JNK attenuated this phenotypic shift in vitro, demonstrating involvement of JNK signaling in this process. Interestingly, activation of JNK signaling was also clearly present in lungs of SPC–TNF-α mice and patients with COPD. Together, these data show a role for TNF-α in the induction of a phenotypic shift in vitro, resulting in increased collagen production and the expression of elastin-degrading matrix metalloproteinases, and provide evidence for involvement of the TNF-α–JNK axis in extracellular matrix remodeling.
Liver X receptor α mediates hepatic triglyceride accumulation through upregulation of G0/G1 Switch Gene 2 expression
Heckmann, Bradlee L. , Zhang, Xiaodong , Saarinen, Alicia M., Schoiswohl, Gabriele , Kershaw, Erin E. , Liu, Jun , Zechner, Rudolf , Liu, Jun , Liu, Jun

JCI Insight | February 16, 2017 | Volume: 2 | Issue: 4 | Pages: No page available

10.1172/jci.insight.88735 | PMID 28239648 Get It

Liver X receptors (LXRs) are transcription factors essential for cholesterol homeostasis and lipogenesis. LXRα has been implicated in regulating hepatic triglyceride (TG) accumulation upon both influx of adipose-derived fatty acids (FAs) during fasting and stimulation of de novo FA synthesis by chemical agonism of LXR. However, whether or not a convergent mechanism is employed to drive deposition of FAs from these 2 different sources in TGs is undetermined. Here, we report that the G0/G1 Switch Gene 2 (G0S2), a selective inhibitor of intracellular TG hydrolysis/lipolysis, is a direct target gene of LXRα. Transcriptional activation is conferred by LXRα binding to a direct repeat 4 (DR4) motif in the G0S2 promoter. While LXRα –/– mice exhibited decreased hepatic G0S2 expression, adenoviral expression of G0S2 was sufficient to restore fasting-induced TG storage and glycogen depletion in the liver of these mice. In response to LXR agonist T0901317, G0S2 ablation prevented hepatic steatosis and hypertriglyceridemia without affecting the beneficial effects on HDL. Thus, the LXRα-G0S2 axis plays a distinct role in regulating hepatic TG during both fasting and pharmacological activation of LXR.
Combination epigenetic therapy in metastatic colorectal cancer (mCRC) with subcutaneous 5-azacitidine and entinostat: a phase 2 consortium/stand Up 2 cancer study
Azad, Nilofer S. , Yin, Jun , Oberg, Ann L. , Flynn, Patrick J. , Adkins, Douglas, Sharma, Anup , Weisenberger, Daniel J. , Brown, Thomas D. , Medvari, Prakriti, Jones, Peter A. , Easwaran, Hariharan , Kamel, Ihab R. , Bahary, Nathan , Kim, George , Pitot, Henry C., Erlichman, Charles , Donehower, Ross C. , Baylin, Stephen B. , Ahuja, Nita , El-Khoueiry, Anthony B. , Adkins, Douglas, Picus, Joel , Shen, Hui , Laird, Peter W. , Piekarz, Richard

Oncotarget | February 7, 2017 | Volume: 8 | Issue: 21 | Pages: 35326-35338

10.18632/oncotarget.15108 | PMID 28186961 Get It