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62 citation(s) found for "Madden, Benjamin".

Abstract 2693: Mass spectrometric approach to identify N-glycosylation of light chain in patients with immunoglobulin light chain amyloidosis (AL)
Kumar, Sanjay , Dasari, Surendra , Merlini, Giampaolo , Hetrick, MeLea, Barnidge, David R. , Murray, David , Merlini, Giampaolo , Dispenzieri, Angela , Milani, Paolo , Madden, Benjamin , Kumar, Sanjay

Cancer Research | August 17, 2018 | Volume: 78 | Issue: 13_Supplement | Pages: 2693-2693

10.1158/1538-7445.am2018-2693 Get It

Abstract AL is a rare plasma cell disorder, resulting from clonal bone marrow plasma cells secreting immunoglobulin light chains (LC), which aggregate abnormally into fibrils, and leads to amyloid deposits in different organs. Previous studies using LC immunopurification and MALDI-TOF/MS (MASS-FIX) on patients with known plasma cell disorders (PCDs), demonstrated that monoclonal LC from AL patients display unusually complex mass to charge spectra (m/z) for their LCs at much higher frequencies than other PCDs such as multiple myeloma. We hypothesized that these were post-translational modification, presumably glycoforms. Here, we report investigations into LC glycosylation using MASS- FIX. Serum from 212 lambda and 72 kappa AL patients were collected following Mayo Clinic IRB guidelines. LC was purified from serum using nanobody enrichment method, followed by MASS-FIX. The LCs spectra acquired on MASS-FIX were visually analyzed and were classified into different patterns. The kappa and lambda LC mass distributions with abnormal complex patterns were interrogated for the presence of glycosylation by exposure to the LC to a deglycoslylating enzyme (PNGase F) and analysis of LC mass distribution using MASS-FIX and by LC-ESI-Orbitrap. Monoclonal LCs demonstrating significantly mass shifted peak outside the normal kappa and lambda mass distribution were observed in 31% of kappa and 6% of lambda patients with AL. In order to determine if this characteristic mass shift was due to glycosylation, 16 kappa and 6 lambda LCs were treated with a PNGase F and LC spectrum were re-examined by MASS-FIX and LC-ESI-Orbitrap. The monoclonal LCs whose masses were significantly shifted beyond normal kappa and lambda mass distributions were found to shift to lower molecular weight after PNGase F treatment, confirming the presence of N-glycosylation. Moreover, an additional 5 kappa and 23 lambda samples had other complex patterns, typically with multiple additional peaks at increments of 162 Da. These samples did not shift with PNGase F suggesting either glycation or O-glycosylation. This work is significant as it confirms that N-glycosylated LCs are over represented in patients with AL in comparison to other PCDs. In patients with AL, the frequency of N-glycosylation of kappa LC clones was 5 times higher than that of lambda LC clones. More work is needed to explore the mechanism for this finding, the role of glycosylation in fibril formation, and the other complex patterns observed. In addition, MASS-FIX method used in this work is currently being validated in the clinical lab such that rapid detection of N-glycosylation in patients with monoclonal gammopathies will be possible routinely, potentially leading to earlier clinical suspicion for AL among patients with monoclonal gammopathies and hence to earlier detection of AL. Citation Format: Sanjay Kumar, Angela Dispenzieri, Surendra Dasari, Paolo Milani, Giampaolo Merlini, MeLea Hetrick, David Barnidge, Benjamin Madden, David Murray. Mass spectrometric approach to identify N-glycosylation of light chain in patients with immunoglobulin light chain amyloidosis (AL) [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2018; 2018 Apr 14-18; Chicago, IL. Philadelphia (PA): AACR; Cancer Res 2018;78(13 Suppl):Abstract nr 2693.
MASS‐FIX may allow identification of patients at risk for light chain amyloidosis before the onset of symptoms
Kourelis, Taxiarchis , Murray, David , Dasari, Surendra , Kumar, Sanjay , Barnidge, David R. , Arendt, Bonnie K., Milani, Paolo , Merlini, Giampaolo , Ramı́rez-Alvarado, Marina , Kyle, Robert A. , Murray, David L., Barnidge, David, Arendt, Bonnie, Milani, Paolo , Ramirez-Alvarado, Marina, Merlini, Giampaolo , Ramirez-Alvarado, Marina , Madden, Benjamin J. , Dispenzieri, Angela , Kumar, Sanjay

American Journal of Hematology | August 14, 2018 | Volume: 93 | Issue: 11 | Pages: No page available

10.1002/ajh.25244 | PMID 30105838 Get It

Identification of De Novo Synthesized and Relatively Older Proteins
Jaleel, Abdul , Klaus, Katherine A. , Morse, Dawn M., Gopala, Srinivas , Henderson, Gregory C. , Madden, Benjamin J. , Nair, K. Sreekumaran

Diabetes | July 12, 2010 | Volume: 59 | Issue: 10 | Pages: 2366-2374

10.2337/db10-0371 | PMID 20622162 Get It

OBJECTIVE The accumulation of old and damaged proteins likely contributes to complications of diabetes, but currently no methodology is available to measure the relative age of a specific protein alongside assessment of posttranslational modifications (PTM). To accomplish our goal of studying the impact of insulin deficiency and hyperglycemia in type 1 diabetes upon accumulation of old damaged isoforms of plasma apolipoprotein A-1 (ApoA-1), we sought to develop a novel methodology, which is reported here and can also be applied to other specific proteins. RESEARCH DESIGN AND METHODS To label newly synthesized proteins, [ring-13C6]phenylalanine was intravenously infused for 8 h in type 1 diabetic participants (n = 7) during both insulin treatment and 8 h of insulin deprivation and in nondiabetic participants (n = 7). ApoA-1 isoforms were purified by two-dimensional gel electrophoresis (2DGE) and assessment of protein identity, PTM, and [ring-13C6]phenylalanine isotopic enrichment (IE) was performed by tandem mass spectrometry. RESULTS Five isoforms of plasma ApoA-1 were identified by 2DGE including ApoA-1 precursor (pro-ApoA-1) that contained the relatively highest IE, whereas the older forms contained higher degrees of damage (carbonylation, deamidation) and far less IE. In type 1 diabetes, the relative ratio of IE of [ring-13C6]phenylalanine in an older isoform versus pro-ApoA-1 was higher during insulin deprivation, indicating that de novo synthesized pro-ApoA-1 more rapidly accumulated damage, converting to mature ApoA-1. CONCLUSIONS We developed a mass spectrometry–based methodology to identify the relative age of protein isoforms. The results demonstrated accelerated oxidative damage to plasma ApoA-1, thus offering a potential mechanism underlying the impact of poor glycemic control in type 1 diabetic patients that affects a patient's risk for vascular disease.
Proteome Analysis of Human Aqueous Humor
Chowdhury, Uttio Roy, Charlesworth, Mary Christine, Fautsch, Michael P. , Madden, Benjamin J.

Investigative Opthalmology & Visual Science | May 13, 2010 | Volume: 51 | Issue: 10 | Pages: 4921

10.1167/iovs.10-5531 | PMID 20463327 Get It

Classification of amyloidosis by laser microdissection and mass spectrometry–based proteomic analysis in clinical biopsy specimens
Vrana, Julie A., Gamez, Jeffrey D., Theis, Jason D. , Bergen, H. Robert, Madden, Benjamin J. , Doǧan, Ahmet

Blood | October 2, 2009 | Volume: 114 | Issue: 24 | Pages: 4957-4959

10.1182/blood-2009-07-230722 | PMID 19797517 Get It

AbstractThe clinical management of amyloidosis is based on the treatment of the underlying etiology, and accurate identification of the protein causing the amyloidosis is of paramount importance. Current methods used for typing of amyloidosis such as immunohistochemistry have low specificity and sensitivity. In this study, we report the development of a highly specific and sensitive novel test for the typing of amyloidosis in routine clinical biopsy specimens. Our approach combines specific sampling by laser microdissection (LMD) and analytical power of tandem mass spectrometry (MS)–based proteomic analysis. We studied 50 cases of amyloidosis that were well-characterized by gold standard clinicopathologic criteria (training set) and an independent validation set comprising 41 cases of cardiac amyloidosis. By use of LMD/MS, we identified the amyloid type with 100% specificity and sensitivity in the training set and with 98% in validation set. Use of the LMD/MS method will enhance our ability to type amyloidosis accurately in clinical biopsy specimens.
Nuclear Factor of Activated T3 Is a Negative Regulator of Ras-JNK1/2-AP-1–Induced Cell Transformation
Yao, Ke , Cho, Yong‐Yeon , Bergen, H. Robert, Ma, Weiya, Bode, Ann M. , Madden, Benjamin J. , Choi, Bu Young , Dong, Zigang

Cancer Research | September 17, 2007 | Volume: 67 | Issue: 18 | Pages: 8725-8735

10.1158/0008-5472.can-06-4788 | PMID 17875713 Get It

Abstract The c-jun-NH2-kinases (JNK) play a critical role in tumor promoter–induced cell transformation and apoptosis. Here, we showed that the nuclear factor of activated T3 (NFAT3) is phosphorylated by JNK1 or JNK2 at Ser213 and Ser217, which are located in the conserved SP motif. The transactivation domain of NFAT3 is found between amino acids (aa) 113 and 260 and includes the phosphorylation targets of JNK1 and JNK2. NFAT3 transactivation activity was suppressed in JNK1−/− or JNK2−/− mouse embryonic fibroblast (MEF) cells compared with wild-type MEF cells. Moreover, a 3xNFAT-luc reporter gene assay indicated that NFAT3 transcriptional activity was increased in a dose-dependent manner by JNK1 or JNK2. Double mutations at Ser213 and Ser217 suppressed NFAT3 transactivation activity; and SP600125, a JNK inhibitor, suppressed NFAT3-induced 3xNFAT-luciferase activity. Knockdown of JNK1 or JNK2 suppressed foci formation in NIH3T3 cells. Importantly, ectopic expression of NFAT3 inhibited AP-1 activity and suppressed foci formation. Furthermore, knockdown of NFAT3 enhanced Ras-JNK1 or JNK2-induced foci formation in NIH3T3 cells. Taken together, these results provided direct evidence for the anti-oncogenic potential of the NFAT3 transcription factor. [Cancer Res 2007;67(18):8725–35]
Non-classical export of epimorphin and its adhesion to αv-integrin in regulation of epithelial morphogenesis
Nelson, Celeste M. , Yamazaki, Kyoko, Takebe, Kyoko, Przybylo, Jennifer A., Hirai, Yohei , Madden, Benjamin J. , Radisky, Derek C.

Journal of Cell Science | May 30, 2007 | Volume: 120 | Issue: 12 | Pages: 2032-2043

10.1242/jcs.006247 | PMID 17535848 Get It

Epimorphin (also known as syntaxin 2) acts as an epithelial morphogen when secreted by stromal cells of the mammary gland, lung, liver, colon, pancreas and other tissues, but the same molecule functions within the cell to mediate membrane fusion. How this molecule, which lacks a signal sequence and contains a transmembrane domain at the C-terminus, translocates across the plasma membrane and is secreted to become a morphogen, and how it initiates morphogenic events is not clear. Here, we show that epimorphin is secreted through a non-classical mechanism, similar to that previously described for secretion of the leaderless protein FGF1, and we identify the key molecular elements responsible for translocation and secretion from the cell. We also show that secreted epimorphin binds to αv-integrin-containing receptors on target epithelial cells, leading to activation of specific downstream signaling pathways and induction of epithelial morphogenesis. These findings provide key insight into how epimorphin functions as an epithelial morphogen.
Elevated Levels of Phosphorylated Fibrinogen-α-Isoforms and Differential Expression of Other Post-Translationally Modified Proteins in the Plasma of Ovarian Cancer Patients
Ogata, Yuko , Heppelmann, Carrie J. , Charlesworth, M. Cristine , Miller, Melinda N., Kalli, Kimberly R., Cliby, William A. , Bergen, H. Robert, Saggese, Diana A., Muddiman, David C. , Charlesworth, M. Cristine , Madden, Benjamin J.

Journal of Proteome Research | November 14, 2006 | Volume: 5 | Issue: 12 | Pages: 3318-3325

10.1021/pr060344+ | PMID 17137333 Get It

Chromatin Assembly Factor 1 Interacts with Histone H3 Methylated at Lysine 79 in the Processes of Epigenetic Silencing and DNA Repair
Zhou, Hui , Muddiman, David C. , Madden, Benjamin J. , Zhang, Zhiguo

Biochemistry | February 28, 2006 | Volume: 45 | Issue: 9 | Pages: 2852-2861

10.1021/bi0521083 | PMID 16503640 Get It

Accurate mass precursor ion data and tandem mass spectrometry identify a class I human leukocyte antigen A*0201-presented peptide originating from vaccinia virus
Johnson, Kenneth L. , Ovsyannikova, Inna G. , Muddiman, David C. , Madden, Benjamin J. , Poland, Gregory A.

Journal of the American Society for Mass Spectrometry | September 27, 2005 | Volume: 16 | Issue: 11 | Pages: 1812-1817

10.1016/j.jasms.2005.07.015 | PMID 16185891 Get It