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748 citation(s) found for "Ma, Dan".

Designing clinical trials in paediatric inflammatory bowel diseases: a PIBDnet commentary
Turner, Dan , Wilson, David C. , Mould, Diane R. , Baldassano, Robert N. , Dubinsky, Marla C. , Heyman, Melvin B. , Ridder, Lissy de , Hyams, Jeffrey S. , Carpi, Javier Martín de , Conklin, Laurie S. , Faubion, William A. , Koletzko, Sibylle , Bousvaros, Athos, Ruemmele, Frank M. , Ruemmele, Frank M , Griffiths, Anne Marie , Russell, Richard Kay

Gut | April 12, 2019 | Volume: 69 | Issue: 1 | Pages: 32-41

10.1136/gutjnl-2018-317987 | PMID 30979718 Get It

Introduction The optimal trial design for assessing novel therapies in paediatric IBD (PIBD) is a subject of intense ongoing global discussions and debate among the different stakeholders. However, there is a consensus that the current situation in which most medications used in children with IBD are prescribed as off-label without sufficient paediatric data is unacceptable. Shortening the time lag between adult and paediatric approval of drugs is of the upmost importance. In this position paper we aimed to provide guidance from the global clinical research network (Pediatric Inflammatory Bowel Disease Network, PIBDnet) for designing clinical trials in PIBD in order to facilitate drug approval for children. Methods A writing group has been established by PIBDnet and topics were assigned to different members. After an iterative process of revisions among the writing group and one face-to-face meeting, all statements have reached consensus of >80% as defined a priori. Next, all core members of PIBDnet voted on the statements, reaching consensus of >80% on all statements. Comments from the members were incorporated in the text. Results The commentary includes 18 statements for guiding data extrapolation from adults, eligibility criteria to PIBD trials, use of placebo, dosing, endpoints and recommendations for feasible trials. Controversial issues have been highlighted in the text. Conclusion The viewpoints expressed in this paper could assist planning clinical trials in PIBD which are both of high quality and ethical, while remaining pragmatic.
Molecular and Cytogenetic Education in Hematopathology Fellowship
Soma, Lorinda, Kovach, Alexandra E. , Siddon, Alexa J. , Beck, Rose , Wu, David , Cook, James R. , Prakash, Sonam , Rosado, Flavia, Bradley, Kyle T., Weinberg, Olga K. , Sargent, Rachel L. , Gibson, Sarah E. , Kovach, Alexandra E , Swerdlow, Steven H. , Kim, Annette S , Jones, Dan M. , Crane, Genevieve M.

American Journal of Clinical Pathology | March 26, 2019 | Volume: 152 | Issue: 4 | Pages: 438-445

10.1093/ajcp/aqz048 | PMID 31141139 Get It

Abstract Objectives Given the increased complexity of molecular and cytogenetic testing (MOL-CG), the Society for Hematopathology Education Committee (SH-EC) was interested in determining what the current expectations are for MOL-CG education in hematopathology (HP) fellowship training. Methods The SH-EC sent a questionnaire to HP fellowship program directors (HP-PDs) covering MOL-CG training curricula, test menus, faculty background, teaching, and sign-out roles. These findings were explored via a panel-based discussion at the 2018 SH-EC meeting for HP-PDs. Results HP fellows are expected to understand basic principles, nomenclature, and indications for and limitations of testing. Interpretation of common assays is within that scope, but not necessarily proficiency in technical troubleshooting of testing or analysis of complex raw data. Conclusions The consensus was that HP fellows should understand the components of MOL-CG testing necessary to incorporate those results into an accurate, clinically relevant, and integrated HP report.
Single-Cell RNA-Sequencing and Optical Electrophysiology of Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes Reveal Discordance Between Cardiac Subtype-Associated Gene Expression Patterns and Electrophysiological Phenotypes
Biendarra‐Tiegs, Sherri M., Ye, Dan , Brandt, Emma B. , Ackerman, Michael J. , Li, Xing , Nelson, Timothy J.

Stem Cells and Development | March 20, 2019 | Volume: 28 | Issue: 10 | Pages: 659-673

10.1089/scd.2019.0030 | PMID 30892143 Get It

The ability to accurately phenotype cells differentiated from human induced pluripotent stem cells (hiPSCs) is essential for their application in modeling developmental and disease processes, yet also poses a particular challenge without the context of anatomical location. Our specific objective was to determine if single-cell gene expression was sufficient to predict the electrophysiology of iPSC-derived cardiac lineages, to evaluate the concordance between molecular and functional surrogate markers. To this end, we used the genetically encoded voltage indicator ArcLight to profile hundreds of hiPSC-derived cardiomyocytes (hiPSC-CMs), thus identifying patterns of electrophysiological maturation and increased prevalence of cells with atrial-like action potentials (APs) between days 11 and 42 of differentiation. To profile expression patterns of cardiomyocyte subtype-associated genes, single-cell RNA-seq was performed at days 12 and 40 after the populations were fully characterized with the high-throughput ArcLight platform. Although we could detect global gene expression changes supporting progressive differentiation, individual cellular expression patterns alone were not able to delineate the individual cardiomyocytes into atrial, ventricular, or nodal subtypes as functionally documented by electrophysiology measurements. Furthermore, our efforts to understand the distinct electrophysiological properties associated with day 12 versus day 40 hiPSC-CMs revealed that ion channel regulators SLMAP , FGF12 , and FHL1 were the most significantly increased genes at day 40, categorized by electrophysiology-related gene functions. Notably, FHL1 knockdown during differentiation was sufficient to significantly modulate APs toward ventricular-like electrophysiology. Thus, our results establish the inability of subtype-associated gene expression patterns to specifically categorize hiPSC-derived cells according to their functional electrophysiology, and yet, altered FHL1 expression is able to redirect electrophysiological maturation of these developing cells. Therefore, noncanonical gene expression patterns of cardiac maturation may be sufficient to direct functional maturation of cardiomyocytes, with canonical gene expression patterns being insufficient to temporally define cardiac subtypes of in vitro differentiation.
MRE11 UFMylation promotes ATM activation
Wang, Zhifeng , Gong, Yamin, Peng, Bin , Shi, R. , Zhao, Hongchang , Zhu, Min , Zhang, Haoxing , Zhou, Jianwei , Zhu, Wei‐Guo , Cong, Yu-Sheng , Xu, Xingzhi , Fan, Dan , Lou, Zhenkun

Nucleic Acids Research | February 17, 2019 | Volume: 47 | Issue: 8 | Pages: 4124-4135

10.1093/nar/gkz110 | PMID 30783677 Get It

Stiffness distribution in the ablated zone after radiofrequency ablation for liver: An ex-vivo study with a tissue elastometer
Li, Xiao‐Long , Liu, Bo-Ji, Chen, Shigao , Li, Dandan , Xu, Hui‐Xiong , Guo, Le‐Hang , Wang, Dan Michelle

Clinical Hemorheology and Microcirculation | January 25, 2019 | Volume: 72 | Issue: 2 | Pages: 151-160

10.3233/ch-180404 | PMID 30689559 Get It

Proceedings of the Association for Research in Vision and Ophthalmology and Champalimaud Foundation Ocular Oncogenesis and Oncology Conference
Pe’er, Jacob, Cardoso, Fátima , Carvalho, Carlos , Coupland, Sarah E. , Desjardins, Laurence , Francis, Jasmine H. , Gombos, Dan S. , Kaliki, Swathi , Maeurer, Markus , Pulido, José S. , Ryll, Bettina , Zhao, Junyang , Parreira, A , O’Brien, Joan M. , Cardoso, Fatima , Smith, Justine R. , Neto, Rubens Belfort , Carvajal, Richard D. , Gallie, Brenda L. , Grossniklaus, Hans E. , Heegaard, Steffen , Jager, Martine Johanna , Ksander, Bruce R. , Moreno, Eduardo , Singh, Arun D. , Wilson, David John , Francis, Jasmine H

Translational Vision Science & Technology | January 10, 2019 | Volume: 8 | Issue: 1 | Pages: 9

10.1167/tvst.8.1.9 | PMID 30652059 Get It