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601 citation(s) found for "Murphy, Seán".

Peri-operative complications in pediatric and adolescent shoulder arthroscopy
Lewallen, Laura, Murphy, Michael, Dahm, Diane L., McIntosh, Amy L. , Edmonds, Eric W.

Journal of Children's Orthopaedics | May 31, 2014 | Volume: 8 | Issue: 4 | Pages: 341-344

10.1007/s11832-014-0595-y | PMID 24880815 Get It

Background Shoulder arthroscopy is not common in the pediatric and adolescent population, but the frequency may be on the rise. The purpose of the study was to determine the incidence of acute complications of arthroscopic shoulder surgery in children and adolescents. Methods A retrospective, cross-sectional review was performed identifying patients aged 18 years or less who underwent an arthroscopic shoulder procedure from 1997 to 2009 at Institution 1 and 2007 to 2010 at Institution 2. Exclusion criteria included open procedures and missing records. Demographic and surgical data were collected, including intra-operative and post-operative complications during the first 6 months. The complications were divided into minor (no secondary treatment) and major (secondary treatment rendered). Results Two hundred children, mean age 15.9 years, met criteria and 73 % were boys. All procedures were performed under general anesthesia, but 51 % included inter-scalene regional anesthesia. There were 16 (8.0 %) total complications recorded. Major complications occurred in five (2.5 %) patients, including two tendinitis/bursitis requiring injections, one broken pain pump catheter requiring an accessory incision to retrieve, one pain control readmission, and one laceration of the cephalic vein requiring ligation. Minor complications occurred in 11 (5.5 %) patients, including allergic reactions, transient dysesthesias, headaches, bronchitis, syncope, transient hypotension, and uvula swelling. Conclusion Although we found no seriously deleterious outcomes, it is important to recognize that an additional service was rendered for 2.5 % of children undergoing shoulder arthroscopy. The events that did occur may be preventable and this study should serve as a baseline to improve quality and safety of shoulder arthroscopy in the pediatric population.
Genomic Rearrangements Define Lineage Relationships between Adjacent Lepidic and Invasive Components in Lung Adenocarcinoma
Wigle, Dennis A. , Lima, Joema Felipe , Harris, Faye R. , Johnson, Sarah H. , Halling, Geoffrey C. , Seto, C, Terra, Simone , Kosari, Farhad , Peikert, Tobias, Aubry, Marie-Christine, Vasmatzis, George , Halling, Geoffrey, Asiedu, Michael K. , Seto, Charlie T, Murphy, Stephen J. , Yang, Ping

Cancer Research | May 30, 2014 | Volume: 74 | Issue: 11 | Pages: 3157-3167

10.1158/0008-5472.can-13-1727 | PMID 24879567 Get It

AbstractThe development of adenocarcinoma of the lung is believed to proceed from in situ disease (adenocarcinoma in situ, AIS) to minimally invasive disease with prominent lepidic growth (minimally invasive adenocarcinoma, MIA), then to fully invasive adenocarcinoma (AD), but direct evidence for this model has been lacking. Because some lung adenocarcinomas show prominent lepidic growth (AD-L), we designed a study to address the lineage relationship between the lepidic (noninvasive) component (L) and the adjacent nonlepidic growth component representing invasive disease within individual tumors. Lineage relationships were evaluated by next-generation DNA sequencing to define large genomic rearrangements in microdissected tissue specimens collected by laser capture. We found a strong lineage relationship between the majority of adjacent lepidic and invasive components, supporting a putative AIS–AD transition. Notably, many rearrangements were detected in the less aggressive lepidic component, although the invasive component exhibited an overall higher rate of genomic rearrangement. Furthermore, a significant number of genomic rearrangements were present in histologically normal lung adjacent to tumor, but not in host germline DNA, suggesting field defects restricted to zonal regions near a tumor. Our results offer a perspective on the genetic pathogenesis underlying adenocarcinoma development and its clinical management. Cancer Res; 74(11); 3157–67. ©2014 AACR.
P4‐332: Regional brain stiffness changes across the Alzheimer's disease spectrum
Murphy, Matthew C. , Glaser, Kevin J. , Felmlee, Joel P. , Huston, John , Jack, Clifford R. , Jones, David T. , Senjem, Matthew L. , Manduca, Armando , Ehman, Richard L.

Alzheimer's & Dementia | March 29, 2014 | Volume: 8 | Issue: 4S_Part_21 | Pages: No page available

10.1016/j.jalz.2013.08.113 Get It

BIMA V3: an aligner customized for mate pair library sequencing
Drucker, Travis, Johnson, Sarah H. , Cradic, Kendall W, Therneau, Terry M. , Vasmatzis, George , Drucker, Travis M, Murphy, Stephen J.

Bioinformatics | February 14, 2014 | Volume: 30 | Issue: 11 | Pages: 1627-1629

10.1093/bioinformatics/btu078 | PMID 24526710 Get It

Abstract Summary: Mate pair library sequencing is an effective and economical method for detecting genomic structural variants and chromosomal abnormalities. Unfortunately, the mapping and alignment of mate-pair read pairs to a reference genome is a challenging and time-consuming process for most next-generation sequencing alignment programs. Large insert sizes, introduction of library preparation protocol artifacts (biotin junction reads, paired-end read contamination, chimeras, etc.) and presence of structural variant breakpoints within reads increase mapping and alignment complexity. We describe an algorithm that is up to 20 times faster and 25% more accurate than popular next-generation sequencing alignment programs when processing mate pair sequencing. Availability: http://bioinformaticstools.mayo.edu/research/bima/ Contact: vasm@mayo.edu or vasmatzis.george@mayo.edu Supplementary Information: Supplementary data are available at Bioinformatics online.
Evaluation of American Joint Committee on Cancer, International Union Against Cancer, and Brigham and Women's Hospital Tumor Staging for Cutaneous Squamous Cell Carcinoma
Jambusaria‐Pahlajani, Anokhi , Harrington, David P., Murphy, Gëorge F. , Qureshi, Abrar A. , Schmults, Chrysalyne D. , Karia, Pritesh S, Karia, Pritesh S.

Journal of Clinical Oncology | December 23, 2013 | Volume: 32 | Issue: 4 | Pages: 327-334

10.1200/jco.2012.48.5326 | PMID 24366933 Get It

Purpose To compare American Joint Committee on Cancer (AJCC), International Union Against Cancer (UICC), and Brigham and Women's Hospital (BWH) tumor (T) staging systems for cutaneous squamous cell carcinoma and validate BWH staging against prior data. Patients and Methods Primary tumors diagnosed from 2000 to 2009 at BWH (n = 1,818) were analyzed. Poor outcomes (local recurrence [LR], nodal metastasis [NM], and disease-specific death [DSD]) were analyzed by T stage with regard to each staging system's distinctiveness (outcome differences between stages), homogeneity (outcome similarity within stages), and monotonicity (outcome worsening with increasing stage). Results AJCC and UICC T3 and T4 were indistinct with overlapping 95% CIs for 10-year cumulative incidences of poor outcomes, but all four BWH stages were distinct. AJCC and UICC high-stage tumors (T3/T4) were rare at 0.3% and 3% of the cohort, respectively. Most poor outcomes occurred in low stages (T1/T2; AJCC: 86% [95% CI, 77% to 91%]; UICC: 70% [61% to 79%]) resulting in heterogeneous outcomes in T1/T2. Conversely, in BWH staging, only 5% of tumors were high stage (T2b/T3), but they accounted for 60% (95% CI, 50% to 69%) of poor outcomes (70% of NMs and 83% of DSDs) indicating superior homogeneity and monotonicity as previously defined. Cumulative incidences of poor outcomes were low for BWH low-stage (T1/T2a) tumors (LR, 1.4% [95% CI, 1% to 2%]; NM, 0.6% [95% CI, 0% to 1%]; DSD, 0.2% [95% CI, 0% to 0.5%]) and higher for high-stage (T2b/T3) tumors (LR, 28% [95% CI, 19% to 38%]; NM, 25% [95% CI, 16% to 35%]; and DSD, 22% [95% CI, 13% to 34%]), which validated an earlier study of an alternative staging system. Conclusion BWH staging offers improved distinctiveness, homogeneity, and monotonicity over AJCC and UICC staging. Population-based validation is needed. BWH T2b/T3 tumors define a high-risk group requiring further study for optimal management.
Health data use, stewardship, and governance: ongoing gaps and challenges: a report from AMIA's 2012 Health Policy Meeting
Bloomrosen, Meryl, FlatelyBrennan, Patti, Cimino, Jim, Detmer, Don E., Edmunds, Margo, Embí, Peter J. , Goldstein, Melissa M. , Hammond, W. Ed , Keenan, Gail M. , Labkoff, S., Murphy, Shawn N. , Safran, Charlie, Speedie, Stuart M. , Strasberg, Howard R. , Temple, Freda, Cimino, James J. , Hripcsak, George , Chute, Christopher G. , Cimino, Jim, Wilcox, Adam B , Cimino, James J

Journal of the American Medical Informatics Association | October 30, 2013 | Volume: 21 | Issue: 2 | Pages: 204-211

10.1136/amiajnl-2013-002117 | PMID 24169275 Get It

IC‐P‐177: MR elastography of frontotemporal dementia
Murphy, Matthew C. , Huston, John , Jones, David T. , Jack, Clifford R. , Boeve, Bradley F. , Ehman, Richard L.

Alzheimer's & Dementia | October 9, 2013 | Volume: 9 | Issue: 4S_Part_2 | Pages: No page available

10.1016/j.jalz.2013.05.174 Get It

P2–120: Antemortem MRI findings associated with presence of microinfarcts at autopsy
Raman, Mekala R., Preboske, Gregory M., Przybelski, Scott A. , Gunter, Jeffrey L. , Murphy, Matthew C. , Petersen, Ronald, Parisi, Joseph E. , Senjem, Matthew L. , Murray, Melissa E. , Boeve, Bradley F. , Knopman, David S. , Dickson, Dennis W. , Jack, Clifford R. , Kantarci, Kejal

Alzheimer's & Dementia | October 9, 2013 | Volume: 9 | Issue: 4S_Part_10 | Pages: No page available

10.1016/j.jalz.2013.05.764 Get It