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12583 citation(s) found for "Vu, John".

A cascade model of dynamic cerebral autoregulation
Kurazumi, Takuya , Wennekers, Ricardo R. J. , Cardim, Danilo , Won, Junyeon , Ashley, John, Claassen, Jurgen A.H.R. , Zhang, R, Sharma, Kartavya , Wennekers, Ricardo R J , Tomoto, Tsubasa , Cardim, Danilo , Won, Junyeon , Ashley, John , Claassen, Jurgen A H R , Zhang, Rong

The Journal of Physiology | April 23, 2026 | Volume: 604 | Issue: 10 | Pages: 3763-3785

10.1113/jp290519 | PMID 42020197 Get It

Abstract Cerebral blood flow is stabilized through dynamic adjustments across both macro‐ and microvascular compartments. While dynamic cerebral autoregulation (dCA) quantifies upstream pressure–flow coupling, downstream microvascular responses are less well characterized and may represent a distinct but functionally linked process. This study tested whether a two‐component cascade model, treating dCA and an empirically derived index of microvascular function (MF) as sequential stages can represent the integrated regulation of cortical oxygenation. Data from 41 healthy adults (20–45 years) were analysed. Beat‐to‐beat mean arterial pressure (MAP), middle cerebral artery flow velocity (CBFV) and cortical oxyhaemoglobin (O 2 Hb) were recorded during supine spontaneous oscillations and forced oscillations at 0.05 Hz using repeated sit–stand manoeuvres. Transfer function analysis quantified frequency‐domain gain, phase and coherence for MAP→CBFV (dCA), CBFV→O 2 Hb (MF) and MAP→O 2 Hb (total pathway). The cascade model was computed as the product of dCA and MF transfer functions. The cascade model derived indices showed strong correlations with total pathway gain, phase and coherence measures during both spontaneous and forced oscillations, with improved linear coupling under forced oscillations. These results support the applicability of a two‐component cascade model for integrated cerebrovascular regulation and suggest that serial interactions between macrovascular and microvascular regulatory mechanisms jointly shape the frequency‐dependent propagation of arterial pressure to brain‐tissue oxygenation dynamics. image Key points Cerebral blood flow is stabilized by coordinated regulation across large arteries and microvessels, but their dynamic interaction has not been experimentally modelled. We examined whether a two‐component cascade model linking upstream dynamic cerebral autoregulation and downstream microvascular function can explain how blood pressure oscillations influence cortical oxygenation. In 41 healthy adults, we recorded beat‐to‐beat blood pressure, middle cerebral artery blood flow velocity and near‐infrared spectroscopy‐derived oxygenation during rest and sit–stand manoeuvres, and analysed them using transfer function analysis. Gains, phases and coherences derived from the cascade model closely matched those from the direct blood pressure–O 2 Hb relationship, particularly under forced oscillations during sit–stand, demonstrating the model's physiological relevance. The cascade model provides a mechanistic framework to separate and quantify large‐ and small‐vessel contributions to cerebral blood flow regulation, with potential application in future studies of ageing and cerebrovascular disease.
Enteroblastic and Hepatoid Colorectal Carcinomas are Aggressive Cancers With a Distinctive Immunophenotype, While Clear Cell Carcinoma Appears to Represent Clear Cell Change in Conventional Colorectal Cancer
Khan, Fahad, Polydorides, Alexandros D., Paulsen, John D., Chen, W, Vazzano, Jennifer , Huber, Aaron , Papke, David, Sharifai, Nima , Allende, Daniela, McHugh, Kelsey, Longacre, Teri A. , Dhall, Deepti, Makhoul, Elias, Lee, Michael J., Collins, Katrina, Ulbright, Thomas M. , Zhang, M. Lisa, Westerhoff, Maria , Gao, Zu‐Hua , Choi, Won‐Tak , Kakar, Sanjay, Chetty, Runjan, Nowak, Klaudia, Zhang, Xuchen, Chen, Wei , McHugh, Kelsey , Khan, Fahad , Gonzalez, Raul S , Chen, Wei , McHugh, Kelsey E , Polydorides, Alexandros D. , Paulsen, John David , Papke, David , Stashek, Kristen , Ruz‐Caracuel, Ignacio , Shia, Jinru , Dhall, Deepti , Collins, Katrina , Zhang, Mingjuan Lisa , Matsukuma, Karen , Kakar, Sanjay , Chetty, Runjan , Nowak, Klaudia M. , Serra, Stefano , González, Raul S.

American Journal of Surgical Pathology | April 21, 2026 | Volume: 50 | Issue: 8 | Pages: 883-893

10.1097/pas.0000000000002555 | PMID 42012857 Get It

Enteroblastic, hepatoid, and clear cell carcinomas are rare subtypes of colorectal carcinoma (CRC) with histologic and immunohistochemical (IHC) overlap. We assessed 37 CRCs that possibly represent these subtypes. Provisional criteria for each subtype, along with case photomicrographs and IHC data, were circulated among the authors to provide diagnostic interpretations. Based on plurality consensus, the carcinomas were classified as enteroblastic (n=13), hepatoid (n=6), and clear cell (n=18). Unanimous agreement was reached in 18% (3 clear cell, 3 hepatoid). Interobserver analysis revealed a mean pairwise Cohen κ of 0.63 (range: 0.32 to 0.91), with the hepatoid subtype eliciting the greatest consensus. Clear cell areas were the most likely to intermix with areas of conventional CRC ( P <0.001). Seven patients (20%) had inflammatory bowel disease (mostly linked to enteroblastic CRC). Twenty-three of 34 patients (68%) had nodal metastasis, and 12 (32%) had distant metastasis (mostly to the liver) at presentation. Median recurrence-free survival was 17 months, with enteroblastic cases the most likely to recur (54%, P =0.015). Median follow-up length was 27 months, with 14 patients (40%) dying of disease (representing 7 enteroblastic, 4 hepatoid, and 3 clear cell CRC). Mutations were identified in TP53 (n=8) , APC (n=3) , FBXW7 (n=2), and KRAS (n=1). Inflammatory bowel disease significantly worsened recurrence-free survival on multivariate analysis, while distant metastasis significantly worsened both recurrence-free and overall survival on multivariate analysis. Enteroblastic, hepatoid, and clear cell CRC demonstrate morphologic and IHC overlap, leading to interobserver variability in diagnosis. Given potential differences in clinical correlations and outcomes, more refined criteria are likely necessary.
Evaluation of standard and modified two-tiered testing algorithms using well-characterized early Lyme disease samples
Horn, Elizabeth J. , Menefee, Barry, Schotthoefer, Anna M. , Dempsey, George, McArdle, Matt, Weber, A., Luca, Cathy De, Pritt, Bobbi S. , Branda, John A. , Horn, Elizabeth J , Weber, Allison F , Pritt, Bobbi S , Dempsey, George, McArdle, Matthew

Journal of Clinical Microbiology | April 21, 2026 | Volume: 64 | Issue: 5 | Pages: No page available

10.1128/jcm.01187-25 | PMID 42012197 Get It

ABSTRACT Current laboratory testing for Lyme disease (LD) relies on serology. We evaluated the performance of standard two-tiered testing (STTT) and modified two-tiered testing (MTTT) algorithms using samples obtained from well-characterized patients with early LD in the U.S. East Coast and Upper Midwest. Participants with signs and symptoms of early LD (cases) and controls were enrolled by Lyme Disease Biobank. We compared the performance of four FDA-cleared STTT or MTTT algorithms using serum samples from 251 participants (107 cases, 69 with a convalescent draw; 144 endemic controls). At the initial blood draw, algorithm sensitivity ranged from 22% to 36%, with specificity ranging from 98% to 100%. MTTT algorithms showed higher sensitivity compared with STTT algorithms ( P ≤ 0.05). One STTT algorithm was less sensitive than the other ( P = 0.035), and there was no significant difference in sensitivity between MTTT algorithms. There was also discordance between algorithms; only 22 of the 45 samples classified as laboratory confirmed by Lyme Disease Biobank testing were positive using all algorithms evaluated. Likelihood of positive two-tiered serology among cases with a suspected erythema migrans (EM) skin lesion increased with longer lesion duration and/or when presenting with >1 constitutional symptom. Participants with suspected EM without constitutional symptoms were unlikely to test positive by any algorithm evaluated. Testing convalescent samples did not improve LD detection, and seroconversion was rare. While MTTT confirmed more early LD cases than STTT, all two-tiered algorithms evaluated were insensitive in this population. Novel diagnostics that improve laboratory confirmation for early LD are urgently needed. IMPORTANCE This study confirms that two-tiered serologic testing algorithms are insensitive in early Lyme disease, particularly within the first 2 weeks after symptom onset or when erythema migrans is not accompanied by constitutional symptoms. It also demonstrates that seroconversion is rare after antibiotic treatment. These results highlight the need for novel diagnostics for early Lyme disease that do not rely on serologic testing.
Standardized Perioperative Protocols Are Associated With Reduced Length of Stay and Readmission in Cushing Disease: Results From the Multicenter RAPID Study
Suryadevara, Carter M. , Salcedo-Sifuentes, Jorge E., Little, Andrew S., Yuen, Kevin C. J., Mendoza, Michelle Magana, Gardner, Paul, Zenonos, Georgios, Silverstein, Julie M., Kim, Albert H., Evans, James J., Barkhoudarian, Garni, Fernandez-Miranda, Juan C., Couldwell, William T., Rennert, Robert C., Kim, Won, Kshettry, Varun R., Wu, Kyle, BENJAMIN, CAROLINA, Zada, Gabriel, Gompel, Jamie Van, Catalino, Michael P., Karsy, Michael, Rosenberg, Yaakov, Mamelak, Adam N, Agrawal, Nidhi , Pacione, Donato , Karsy, Michael , Van Gompel, Jamie, Karsy, Michael , Salcedo-Sifuentes, Jorge E. , Little, Andrew S. , Yuen, Kevin C.J. , Zenonos, Georgios A, Silverstein, Julie , Kim, Albert H , Evans, James J., Barkhoudarian, Garni , Fernandez‐Miranda, Juan C. , Couldwell, William T. , Rennert, Robert C , Kshettry, Varun R. , Zada, Gabriel , Chicoine, Michael , Gompel, Jamie J. Van , Catalino, Michael Paul, Agrawal, Nidhi

Neurosurgery | April 21, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.1227/neu.0000000000003992 | PMID 42012163 Get It

BACKGROUND AND OBJECTIVES: Perioperative protocols facilitate earlier discharge without compromising safety in nonfunctioning pituitary adenomas, but no large multicenter studies in the United States have investigated protocols regarding Cushing disease (CD). We sought to characterize perioperative protocols and how their implementation influences clinical outcomes in patients with CD. METHODS: A retrospective analysis was conducted using data from the Registry of Adenomas of the Pituitary and Related Disorders consortium comprising 13 US academic pituitary centers. Institutions were surveyed regarding perioperative procedures for patients undergoing transsphenoidal tumor resection for CD. The impacts of institutional procedures and approaches to implementation on length of stay (LOS) and unplanned 90-day readmission were evaluated. RESULTS: Thirteen institutions contributed survey responses and clinical data for a total of 832 patients meeting inclusion criteria. Ten (76.9%) institutions reported having a postoperative protocol, 9 (69.2%) used a formal document to outline their protocol, and 3 (23.1%) had protocols implemented into hospital policy. Mean LOS was significantly reduced in centers with an established protocol (3.14 vs 3.42 days, P = .032), and more so with a formal document (3.10 vs 3.48 days, P = .001) or hospital policy (2.72 vs 3.36 days, P < .001). Patients treated after protocol implementation experienced shorter LOS ( P < .001). Other factors associated with reduced LOS were presence of a separate CD pathway, intraoperative checklist specific to pituitary surgery, non-narcotic pain regimen, Foley removal order, dedicated outpatient advanced practice provider follow-up, and target discharge date ≤2 days. Intraoperative checklist ( P = .045), non-narcotic pain regimen ( P = .048), nasal packing ( P = .005), and 1-day target discharge date ( P = .032) were important factors against readmission. Compared with microscopic surgery, endoscopic surgery was associated with shorter LOS but increased readmission odds. CONCLUSION: This is the first multicenter study to illustrate that implementation of perioperative protocols is associated with a reduction in LOS and readmission risk in patients with CD.
Discordance Between Patient and Physician Global Assessments in Early Systemic Sclerosis
Romich, Ellen , Ogdie, Alexis, Stephens‐Shields, Alisa, Merkel, Peter A., Assassi, Shervin , Bujor, Andreea M. , Castelino, Flavia V. , Chung, Lorinda, Evnin, Luke, Gordon, Jessica , Griffith, Melissa, Hant, Faye N. , Harding, Monica, Lakin, Kimberly S., Lebiedz‐Odrobina, Dorota J., Luo, Yiming, McMahan, Zsuzsanna H. , Molitor, Jerry, Moore, Duncan F. , RIchardson, Carrie, Shah, Amit N., Steen, Virginia, Volkmann, Elizabeth R. , Zahn, Carleigh , Sandorfi, Nora , Investigators, for the CONQUER, Chung, Leland W.K. , Bujor, Andreea , Castelino, Flavia V , Frech, Tracy M , Gordon, Jessica K , Hummers, Laura K , Khanna, Dinesh , Mayes, Maureen D , McMahan, Zsuzsanna H , Paik, Julie J , Skaug, Brian , Volkmann, Elizabeth R , Zahn, Carleigh , Chung, Lorinda , Assassi, Shervin , Ogdie, Alexis , Stephens‐Shields, Alisa J. , Merkel, Peter A. , Bernstein, Elana J. , Frech, Tracy , Khanna, Dinesh , Lakin, Kimberly S. , Lebiedz‐Odrobina, Dorota, Makol, Ashima , Mayes, Maureen D. , Molitor, Jerry A., Paik, Julie J. , Richardson, Carrie , Skaug, Brian , Shah, Ami A. , Shah, Ankoor, Steen, Virginia , VanBuren, John M.

Arthritis Care & Research | April 20, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.1002/acr.80069 | PMID 42007807 Get It

Objective This study aims to identify factors associated with patient global assessment (PtGA) and physician global assessment (PhGA) and discordance between them in systemic sclerosis (SSc). Methods Data from adults with early SSc (<5 years) from the Collaborative National Quality and Efficacy Registry were included. PtGA and PhGA (0–10 scale), clinical evaluations, and patient‐reported outcomes (PROs) were collected every six months. Multivariable mixed‐effects linear regression identified factors associated with PtGA and PhGA using (1) clinical variables and (2) clinical variables plus PROs. Relative weight analysis (RWA) determined the relative importance of each variable. Discordance (≥2 points between PtGA and PhGA) was assessed using multinomial mixed‐effects logistic regression. Results Among 956 patients (83% women, 33% limited disease), mean PtGA and PhGA at enrollment were 4.2 (SD 2.6) and 3.4 (SD 2.0), respectively ( P < 0.001). RWA of clinical variables identified modified Rodnan skin score (mRSS) and New York Heart Association (NYHA) functional class as most influential for both global assessments. After including PROs, PtGA was most influenced by measures of pain, skin symptoms, and physical function. Discordance occurred in 53% of patients (35% PtGA worse, 18% PhGA worse). Worse PtGA was associated with higher overall pain and discomfort. Worse PhGA was associated with higher mRSS, worse NYHA class, higher pain interference, and lower diffusing capacity of the lung. Conclusion Discordance between PtGA and PhGA occurs commonly, highlighting the need for comprehensive symptom management and measurement of disease burden in this complex disease. In SSc, differences in PtGA and PhGA reflect dissimilar weighting of data elements.
Return to sport after meniscectomy, meniscal repair, and meniscal allograft transplantation for meniscal lesions in athletes: A systematic review and meta‐analysis
Bensa, Alessandro , Piano, Andrea , Fumagalli, Giacomo Arthur, Krych, Aaron John, Verdonk, Peter, Krych, Aaron J. , Verdonk, Peter , Filardo, Giuseppe

Knee Surgery, Sports Traumatology, Arthroscopy | April 20, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.1002/ksa.70404 | PMID 42003662 Get It

Abstract Purpose The aim of this systematic review and meta‐analysis was to quantify and compare the evidence on the results obtained with the surgical treatments for meniscal lesions in athletes. Methods A literature search was conducted on PubMed, Cochrane and Web of Science in August 2025 according to the PRISMA guidelines. Inclusion criteria were clinical studies (randomised controlled trials [RCTs], non‐randomised comparative studies and case series), ≥6 patients, in the English language, on the surgical treatment of meniscal lesions in athletes. A meta‐analysis was conducted on the rate of patients returning to sport, the time to return to sport, and the rate of patients returning to the pre‐injury level of sport. Patient‐reported outcome measures, adverse events, failures and reoperation rates, as well as risk of bias and quality of evidence, were also documented. The risk of bias was assessed using the Cochrane RoB 2.0 tool, the Cochrane ROBINS‐I tool, and the JBI Critical appraisal checklist. The quality of evidence was assessed using a modified Coleman score and the GRADE tool. Result The mean time to return to sport was 2.1 months for meniscectomy, 5.8 months for meniscal repair, and 8.9 months for meniscal allograft transplantation (MAT). Statistically significant differences were observed between meniscectomy and repair and between meniscectomy and MAT (both p < 0.001). Meniscectomy showed a return to sport rate of 98.2%, meniscal repair of 96.9%, and MAT of 94.2%, while return to the same pre‐injury level of sport was reported as 84.4% for meniscectomy, 81.3% for meniscal repair, and 77.4% for MAT, with no statistically significant differences between groups. The mean modified Coleman Methodology Score for the included studies was 66.6 ± 7.0. Conclusion Meniscectomy, meniscal repair, and MAT are all able to provide high rates of return to sport in athletes. In the investigated treatment cohorts, meniscectomy presented the shortest pooled time to return to sport, followed by meniscal repair and MAT. Importantly, all treatments offered good rates of return to the same level of athletic performance. The treatment choice should be guided by an individualised, multidisciplinary approach aimed at providing a patient‐tailored treatment strategy to optimise both athletic recovery and joint preservation. Level of Evidence Level I.
Femoral component collar and calcar contact during total hip arthroplasty: gap incidence, subsidence, and biomechanical testing - a scoping review
Yanamala, Sandeep , Alshaibi, Rakan , Nagelli, Christopher V. , Taunton, Michael, Hevesi, Mario, Kelly, John, Nagelli, Christopher, Kelly, John P. , Taunton, Michael J. , Hevesi, Mario , Yanamala, Sandeep R

Orthopedic Reviews | April 20, 2026 | Volume: 18 | Issue: No issue available | Pages: No page available

10.52965/001c.160596 | PMID 42022231 Get It

Introduction In recent years collared femoral stems have been increasingly utilized in total hip arthroplasty (THA) for their ability to improve rotational stability, metaphyseal load transfer, and prevent periprosthetic femoral fracture (PFF). While literature has demonstrated their benefit over collarless stems, the clinical and biomechanical implications of a postoperative collar–calcar gap (CCG) after implantation remain incompletely understood. Objective The purpose of this scoping review was to evaluate existing literature around CCG in primary THA. Methods A PRISMA Scoping Review literature search was conducted across Ovid MEDLINE, Embase, Cochrane CENTRAL, and Scopus databases. Studies were included if they reported CCG incidence, subsidence, remodeling, or biomechanical performance in primary THA. Two independent reviewers screened studies and extracted data, and clinical study quality was assessed using the Newcastle–Ottawa Scale. Results A total of 408 studies were identified and 11 met inclusion criteria. The incidence of postoperative CCG varied from 18.7% to 53.9%. Most gaps demonstrated closure over time (66–76%). Biomechanical and finite element studies showed improved stability, reduced micromotion, and decreased periprosthetic fracture risk when direct collar–calcar contact was achieved. In contrast, stems with persistent gaps demonstrated increased subsidence (up to 19% vs 1.3%) and biomechanical behavior comparable to collarless designs. Conclusion CCG is common following THA. The majority of gaps resolve, however biomechanical evidence demonstrates that the advantages of collared stems depend on calcar contact. Preventing CCG may optimize early implant stability, though surgical technique must balance mechanical engagement with preservation of proximal femoral bone stock.
Unsupervised Machine Learning for Adaptive Immune Receptors with immuneML
Pavlović, Milena , Würtzen, Charlotte , Kanduri, Chakravarthi , Mamica, Maria , Scheffer, Lonneke , Lund‐Andersen, Christin , Gubatan, John Mark , Ullmann, Theresa , Greiff, Victor , Sandve, G K , Gubatan, John

No container title available | April 18, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.64898/2026.04.15.718648 Get It

Abstract Machine learning (ML) enables adaptive immune receptor repertoires (AIRRs) analyses for biomarker identification and therapeutic development. With the majority of AIRR data partially or imperfectly labeled, unsupervised ML is essential for motif discovery, biologically meaningful clustering, and generation of novel receptor sequences. However, no unified framework for unsupervised ML exists in the AIRR field, hindering the assessment of model robustness and generalizability. Here, we present an immuneML release advancing unsupervised ML in the AIRR field through unified clustering workflows, interpretable generative modeling, integration with protein language model embeddings, dimensionality reduction, and visualization. We demonstrate immuneML’s utility in three use cases: (i) benchmarking generative models for epitope-specific sequence generation, assessing specificity and novelty, (ii) systematic evaluation of clustering approaches on experimental receptor sequences against biological properties, such as epitope specificity and MHC, and (iii) unsupervised analysis of an experimental AIRR dataset to examine potential confounding, a practice widespread in related fields but unexplored in AIRR analyses.
Atezolizumab for Alveolar Soft Part Sarcoma: A Clinical Trial Update
Chen, Alice P. , Rosenberger, Christina L. , Moore, Nancy, Foster, Jared C. , Naqash, Abdul Rafeh , Sharon, Elad , Coyne, Geraldine O’Sullivan , Schwartz, Gary K. , Riedel, Richard F. , Glod, John, Hu, James , Read, William L., Merriam, Priscilla , Deshpande, Hari A., Ladle, Brian H. , Okuno, Scott H. , Beck, Jill C., Chen, J Y, Ferry‐Galow, Katherine V., Fino, Kristin, Wilsker, Deborah, Begum, Asma , Parchment, Ralph E. , Doroshow, James H. , O'Sullivan Coyne, Geraldine , Conley, Anthony P , Burgess, Melissa A , Davis, Elizabeth J , Merriam, Priscilla , Ladle, Brian H , Okuno, Scott , Chen, James L , Ferry-Galow, Katherine V , Miller, Brandon L , Wilsker, Deborah F , Doroshow, James H , Riedel, Richard F , Sharon, Elad , Naqash, Abdul Rafeh , Schwartz, Gary K , Moore, Nancy, Glod, John , Conley, Anthony P. , Read, William, Burgess, Melissa , Davis, Elizabeth J. , Deshpande, Hari A.

Journal of Clinical Oncology | April 18, 2026 | Volume: 44 | Issue: 16 | Pages: 1490-1497

10.1200/jco-25-02811 | PMID 41999612 Get It

We previously reported initial results of the pivotal phase II trial of atezolizumab for patients with alveolar soft part sarcoma (ASPS; ClinicalTrials.gov identifier: NCT03141684 ). Here, we report on three additional years of observation. Fifty-three patients with ASPS received atezolizumab. Median duration of response increased to 37.0 months. Objective response rate (ORR) and median progression-free survival (mPFS) remained essentially as previously reported (35.8% [95% CI, 23.1 to 50.2] and 20.8 months [IQR, 7.6-not reached], respectively). ASPSCR1::TFE3 fusion type was determined for 47/53 patients; ORR and mPFS were higher among the 41 patients expressing type 1 (43.9% [95% CI, 28.5 to 60.2] and 28.3 months [IQR, 9.2-not reached], respectively) than the six patients expressing type 2 (0% [95% CI, 0 to 45.9] and 7.5 months [IQR, 3.9-not reached], respectively, PFS HR, 3.2 [95% CI, 1.01 to 10.2]). Eleven patients chose a per-protocol drug holiday (range, 3.5-26.4 months) after ≥2 years of treatment; two experienced disease progression during the holiday. Nine eligible patients elected to receive bevacizumab plus atezolizumab after progressing on monotherapy; ORR was 0% and mPFS was 18.5 months (IQR, 7.9-21.1) in this small cohort. Long-term results support using atezolizumab to treat ASPS, even for several years; a drug holiday with careful monitoring may be an option for some patients.